• 2019
  Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales A, Saito R, Pongolini S, Brisse S, Feil E, Bandi C, Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae, Genome Biol Evol 2019 Oct;.
• 2019
  Merla C, Rodrigues C, Passet V, Corbella M, Thorpe HA, Kallonen TVS, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil EJ, Brisse S, Description of sp. nov. and of sp. nov, Front Microbiol 2019;10:2360.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170], Res. Microbiol. 2019 Sep - Oct;170(6-7):300.
• 2019
  Savin C, Criscuolo A, Guglielmini J, Le Guern AS, Carniel E, Pizarro-Cerdá J, Brisse S, Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization, Microb Genom 2019 Oct;.
• 2019
  Badell E, Guillot S, Tulliez M, Pascal M, Panunzi LG, Rose S, Litt D, Fry NK, Brisse S, Improved quadruplex real-time PCR assay for the diagnosis of diphtheria, J. Med. Microbiol. 2019 Sep;.
• 2019
  Ben Fraj I, Bouchez V, Smaoui H, Kechrid A, Brisse S, Genome characteristics of isolates from Tunisia, J. Med. Microbiol. 2019 Sep;68(9):1320-1323.
• 2019
  Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M, Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products, Nat Commun 2019 Aug;10(1):3619.
• 2019
  Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, The speciation and hybridization history of the genus Salmonella, Microb Genom 2019 Aug;5(8).
• 2019
  Brehony C, McGrath E, Brennan W, Tuohy A, Whyte T, Brisse S, Maiden M, Jolley K, Morris D, Cormican M, An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase, J. Antimicrob. Chemother. 2019 Jul;74(7):1856-1862.
• 2019
  Mahon BM, Brehony C, Cahill N, McGrath E, O'Connor L, Varley A, Cormican M, Ryan S, Hickey P, Keane S, Mulligan M, Ruane B, Jolley KA, Maiden MC, Brisse S, Morris D, Detection of OXA-48-like-producing Enterobacterales in Irish recreational water, Sci. Total Environ. 2019 Nov;690:1-6.
• 2019
  Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M, Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products, Nat Commun 2019 06;10(1):2488.
• 2019
  Thiry D, Passet V, Danis-Wlodarczyk K, Lood C, Wagemans J, De Sordi L, van Noort V, Dufour N, Debarbieux L, Mainil JG, Brisse S, Lavigne R, New Bacteriophages against Emerging Lineages ST23 and ST258 of and Efficacy Assessment in Larvae, Viruses 2019 May;11(5).
• 2019
  Gaiarsa S, Batisti Biffignandi G, Esposito EP, Castelli M, Jolley KA, Brisse S, Sassera D, Zarrilli R, Comparative Analysis of the Two Multilocus Sequence Typing (MLST) Schemes, Front Microbiol 2019;10:930.
• 2019
  Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M, Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance, PLoS Negl Trop Dis 2019 Apr;13(4):e0007374.
• 2019
  Cahill N, O'Connor L, Mahon B, Varley Á, McGrath E, Ryan P, Cormican M, Brehony C, Jolley KA, Maiden MC, Brisse S, Morris D, Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales?, Sci. Total Environ. 2019 Apr;672:618-624.
• 2019
  Toubiana J, Azarnoush S, Bouchez V, Landier A, Guillot S, Matczak S, Bonacorsi S, Brisse S, Bacteremia: Clinical Expression and Bacterial Genomics, Open Forum Infect Dis 2019 Apr;6(4):ofz122.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov, Res. Microbiol. 2019 Apr - May;170(3):165-170.
• 2019
  Painset A, Björkman JT, Kiil K, Guillier L, Mariet JF, Félix B, Amar C, Rotariu O, Roussel S, Perez-Reche F, Brisse S, Moura A, Lecuit M, Forbes K, Strachan N, Grant K, Møller-Nielsen E, Dallman TJ, LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe, Microb Genom 2019 02;5(2).
• 2019
  Lepuschitz S, Schill S, Stoeger A, Pekard-Amenitsch S, Huhulescu S, Inreiter N, Hartl R, Kerschner H, Sorschag S, Springer B, Brisse S, Allerberger F, Mach RL, Ruppitsch W, Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals, Sci. Total Environ. 2019 Jan;662:227-235.
• 2018
  Scheifer C, Rolland-Debord C, Badell E, Reibel F, Aubry A, Perignon A, Patey O, Brisse S, Caumes E, Re-emergence of Corynebacterium diphtheriae, Med Mal Infect 2019 Sep;49(6):463-466.
• 2018
  Rodrigues C, Passet V, Rakotondrasoa A, Brisse S, Identification of and Related Phylogroups by MALDI-TOF Mass Spectrometry, Front Microbiol 2018;9:3000.
• 2018
  Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE, Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae, Genome Med 2018 10;10(1):77.
• 2018
  Nielsen HL, Tarpgaard IH, Fuglsang-Damgaard D, Thomsen PK, Brisse S, Dalager-Pedersen M, Rare meningitis case in a Danish male, JMM Case Rep 2018 Aug;5(8):e005163.
• 2018
  Lam MMC, Wyres KL, Duchêne S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE, Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination, Nat Commun 2018 07;9(1):2703.
• 2018
  Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE, Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations, Microb Genom 2018 Sep;4(9).
• 2018
  Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S, Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough, Emerging Infect. Dis. 2018 Jun;24(6):988-994.
• 2018
  Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A, Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing, MBio 2018 04;9(2).
• 2018
  Corelli B, Almeida AS, Sonego F, Castiglia V, Fevre C, Brisse S, Sansonetti PJ, Tournebize R, Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation, PLoS Negl Trop Dis 2018 Jan;12(1):e0006201.
• 2017
  Passet V, Brisse S, Description of Klebsiella grimontii sp. nov, Int. J. Syst. Evol. Microbiol. 2018 Jan;68(1):377-381.
• 2017
  Samuelsen Ø, Overballe-Petersen S, Bjørnholt JV, Brisse S, Doumith M, Woodford N, Hopkins KL, Aasnæs B, Haldorsen B, Sundsfjord A, , Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014, PLoS ONE 2017;12(11):e0187832.
• 2017
  Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V, Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s, BMC Genomics 2017 Nov;18(1):873.
• 2017
  Garcia-Garcera M, Touchon M, Brisse S, Rocha EPC, Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter, Environ. Microbiol. 2017 Oct;.
• 2017
  Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M, Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France, Emerging Infect. Dis. 2017 09;23(9):1462-1470.
• 2017
  Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR, Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov, Antonie Van Leeuwenhoek 2018 Jan;111(1):55-72.
• 2017
  Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D, Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter, Int. J. Syst. Evol. Microbiol. 2017 Sep;67(9):3192-3197.
• 2017
  Bialek-Davenet S, Mayer N, Vergalli J, Duprilot M, Brisse S, Pagès JM, Nicolas-Chanoine MH, In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification, Sci Rep 2017 Jul;7(1):6722.
• 2017
  Saffarian A, Touchon M, Mulet C, Tournebize R, Passet V, Brisse S, Rocha EPC, Sansonetti PJ, Pédron T, Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts, BMC Genomics 2017 07;18(1):525.
• 2017
  Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S, Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain, Nat Commun 2017 05;8:15483.
• 2017
  Villa L, Feudi C, Fortini D, Brisse S, Passet V, Bonura C, Endimiani A, Mammina C, Ocampo AM, Jimenez JN, Doumith M, Woodford N, Hopkins K, Carattoli A, Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone, Microb Genom 2017 Apr;3(4):e000110.
• 2017
  Blin C, Passet V, Touchon M, Rocha EPC, Brisse S, Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae, Environ. Microbiol. 2017 May;19(5):1881-1898.
• 2017
  Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S, Citrobacter europaeus sp. nov., isolated from water and human faecal samples, Int. J. Syst. Evol. Microbiol. 2017 Jan;67(1):170-173.
• 2017
  Billard-Pomares T, Rouyer C, Walewski V, Badell-Ocando E, Dumas M, Zumelzu C, Jaureguy F, Brisse S, Caux F, Bouchaud O, Carbonnelle E, Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of in a Young Male Back From Senegal, Open Forum Infect Dis 2017;4(1):ofw271.
• 2016
  Melot B, Brisse S, Breurec S, Passet V, Malpote E, Lamaury I, Thiery G, Hoen B, Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean, BMC Infect. Dis. 2016 Dec;16(1):736.
• 2016
  Lebreton A, Stavru F, Brisse S, Cossart P, 1926-2016: 90 Years of listeriology, Microbes Infect. 2016 Dec;18(12):711-723.
• 2016
  Dreyer M, Aguilar-Bultet L, Rupp S, Guldimann C, Stephan R, Schock A, Otter A, Schüpbach G, Brisse S, Lecuit M, Frey J, Oevermann A, Listeria monocytogenes sequence type 1 is predominant in ruminant rhombencephalitis, Sci Rep 2016 11;6:36419.
• 2016
  Martin RM, Cao J, Brisse S, Passet V, Wu W, Zhao L, Malani PN, Rao K, Bachman MA, Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae, mSphere 2016 Sep-Oct;1(5).
• 2016
  Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S, Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes, Nat Microbiol 2016 Oct;2:16185.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
• 2016
  Breurec S, Criscuolo A, Diancourt L, Rendueles O, Vandenbogaert M, Passet V, Caro V, Rocha EP, Touchon M, Brisse S, Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
• 2016
  Breurec S, Melot B, Hoen B, Passet V, Schepers K, Bastian S, Brisse S, Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae, Emerging Infect. Dis. 2016 Mar;22(3):529-31.
• 2016
  Sapriel G, Konjek J, Orgeur M, Bouri L, Frézal L, Roux AL, Dumas E, Brosch R, Bouchier C, Brisse S, Vandenbogaert M, Thiberge JM, Caro V, Ngeow YF, Tan JL, Herrmann JL, Gaillard JL, Heym B, Wirth T, Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications, BMC Genomics 2016 Feb;17:118.
• 2016
  Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M, Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity, Nat. Genet. 2016 Mar;48(3):308-313.
• 2015
  Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Aschard H, Denamur M, Cywes-Bentley C, Schwarz S, Tenaillon O, Andremont A, Picard B, Mekalanos J, Brisse S, Denamur E, Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans, Mol. Biol. Evol. 2016 Apr;33(4):898-914.
• 2015
  Alanio A, Garcia-Hermoso D, Criscuolo A, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Mimoun M, Mebazaa A, Dromer F, Brisse S, Bretagne S, Whole genome sequencing to investigate an outbreak of mucormycosis in a burn unit, Mycoses 2015 Oct;58(S4):23-23.
• 2015
  D Garcia-Hermoso, A Criscuolo, M Legrande, M Chaouat, B Denis, M Lafaurie, M Rouveau, C Soler, M Mimoun, A Mebazaa, F Dromer, S Brisse, S Bretagne, A Alanio, Épidémie de mucormycose dans un centre de traitement des brûlés : des biomarqueurs diagnostiques au séquençage complets des souches, J. Myc. Med. 2015 Sep; 25(3):219.
• 2015
  Izdebski R, Fiett J, Urbanowicz P, Baraniak A, Derde LP, Bonten MJ, Carmeli Y, Goossens H, Hryniewicz W, Brun-Buisson C, Brisse S, Gniadkowski M, ,, Phylogenetic lineages, clones and β-lactamases in an international collection of Klebsiella oxytoca isolates non-susceptible to expanded-spectrum cephalosporins, J. Antimicrob. Chemother. 2015 Dec;70(12):3230-7.
• 2015
  Chenal-Francisque V, Maury MM, Lavina M, Touchon M, Leclercq A, Lecuit M, Brisse S, Clonogrouping, a Rapid Multiplex PCR Method for Identification of Major Clones of Listeria monocytogenes, J. Clin. Microbiol. 2015 Oct;53(10):3355-8.
• 2015
  Onori R, Gaiarsa S, Comandatore F, Pongolini S, Brisse S, Colombo A, Cassani G, Marone P, Grossi P, Minoja G, Bandi C, Sassera D, Toniolo A, Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital, J. Clin. Microbiol. 2015 Sep;53(9):2861-8.
• 2015
  Holt KE, Wertheim H, Zadoks RN, Baker S, Whitehouse CA, Dance D, Jenney A, Connor TR, Hsu LY, Severin J, Brisse S, Cao H, Wilksch J, Gorrie C, Schultz MB, Edwards DJ, Nguyen KV, Nguyen TV, Dao TT, Mensink M, Minh VL, Nhu NT, Schultsz C, Kuntaman K, Newton PN, Moore CE, Strugnell RA, Thomson NR, Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health, Proc. Natl. Acad. Sci. U.S.A. 2015 Jul;112(27):E3574-81.
• 2015
  Khater F, Balestrino D, Charbonnel N, Dufayard JF, Brisse S, Forestier C, In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization, PLoS ONE 2015;10(3):e0116215.
• 2015
  Clermont D, Motreff L, Passet V, Fernandez JC, Bizet C, Brisse S, Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov, Int. J. Syst. Evol. Microbiol. 2015 May;65(Pt 5):1486-90.
• 2015
  Passet V, Brisse S, Association of tellurite resistance with hypervirulent clonal groups of Klebsiella pneumoniae, J. Clin. Microbiol. 2015 Apr;53(4):1380-2.
• 2015
  Nemec A, Krizova L, Maixnerova M, Sedo O, Brisse S, Higgins PG, Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens, Int. J. Syst. Evol. Microbiol. 2015 Mar;65(Pt 3):934-42.
• 2014
  Guilbaud M, Piveteau P, Desvaux M, Brisse S, Briandet R, Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype, Appl. Environ. Microbiol. 2015 Mar;81(5):1813-9.
• 2014
  Jeannot K, Diancourt L, Vaux S, Thouverez M, Ribeiro A, Coignard B, Courvalin P, Brisse S, Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France, PLoS ONE 2014;9(12):e115452.
• 2014
  Maatallah M, Vading M, Kabir MH, Bakhrouf A, Kalin M, Nauclér P, Brisse S, Giske CG, Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae, PLoS ONE 2014;9(11):e113539.
• 2014
  Berthet N, Falguières M, Filippone C, Bertolus C, Bole-Feysot C, Brisse S, Gessain A, Heard I, Favre M, Resequencing microarray technology for genotyping human papillomavirus in cervical smears, PLoS ONE 2014;9(11):e109301.
• 2014
  Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S, Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups, Emerging Infect. Dis. 2014 Nov;20(11):1812-20.
• 2014
  Compain F, Babosan A, Brisse S, Genel N, Audo J, Ailloud F, Kassis-Chikhani N, Arlet G, Decré D, Multiplex PCR for detection of seven virulence factors and K1/K2 capsular serotypes of Klebsiella pneumoniae, J. Clin. Microbiol. 2014 Dec;52(12):4377-80.
• 2014
  Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Nicolas-Chanoine MH, Decré D, Brisse S, Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2, J. Med. Microbiol. 2014 Dec;63(Pt 12):1608-14.
• 2014
  Bourhy P, Collet L, Brisse S, Picardeau M, Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans, Int. J. Syst. Evol. Microbiol. 2014 Dec;64(Pt 12):4061-7.
• 2014
  Bialek-Davenet S, Lavigne JP, Guyot K, Mayer N, Tournebize R, Brisse S, Leflon-Guibout V, Nicolas-Chanoine MH, Differential contribution of AcrAB and OqxAB efflux pumps to multidrug resistance and virulence in Klebsiella pneumoniae, J. Antimicrob. Chemother. 2015 Jan;70(1):81-8.
• 2014
  Althaus D, Lehner A, Brisse S, Maury M, Tasara T, Stephan R, Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland, Foodborne Pathog. Dis. 2014 Oct;11(10):753-8.
• 2014
  Brisse S, Passet V, Grimont PA, Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola, Int. J. Syst. Evol. Microbiol. 2014 Sep;64(Pt 9):3146-52.
• 2014
  Criscuolo A, Brisse S, AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries, Front Genet 2014;5:130.
• 2014
  Compain F, Frangeul L, Drieux L, Verdet C, Brisse S, Arlet G, Decré D, Complete nucleotide sequence of two multidrug-resistant IncR plasmids from Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2014 Jul;58(7):4207-10.
• 2014
  Yalcindag E, Rougeron V, Elguero E, Arnathau C, Durand P, Brisse S, Diancourt L, Aubouy A, Becquart P, D'Alessandro U, Fontenille D, Gamboa D, Maestre A, Ménard D, Musset L, Noya O, Veron V, Wide A, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F, Prugnolle F, Patterns of selection on Plasmodium falciparum erythrocyte-binding antigens after the colonization of the New World, Mol. Ecol. 2014 Apr;23(8):1979-93.
• 2014
  Bécavin C, Bouchier C, Lechat P, Archambaud C, Creno S, Gouin E, Wu Z, Kühbacher A, Brisse S, Pucciarelli MG, García-del Portillo F, Hain T, Portnoy DA, Chakraborty T, Lecuit M, Pizarro-Cerdá J, Moszer I, Bierne H, Cossart P, Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity, MBio 2014;5(2):e00969-14.
• 2014
  Diago-Navarro E, Chen L, Passet V, Burack S, Ulacia-Hernando A, Kodiyanplakkal RP, Levi MH, Brisse S, Kreiswirth BN, Fries BC, Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits, J. Infect. Dis. 2014 Sep;210(5):803-13.
• 2014
  Criscuolo A, de la Blanchardière A, Coeuret S, Passet V, Saguet-Rysanek V, Vergnaud M, Verdon R, Leclercq A, Lecuit M, Brisse S, Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease, Genome Announc 2014 Mar;2(2).
• 2014
  Coeuret S, de La Blanchardière A, Saguet-Rysanek V, Chèze S, Tavernier M, Arsène D, Criscuolo A, Brisse S, Vergnaud M, Verdon R, Lecuit M, Campylobacter coli cultured from the stools of a patient with immunoproliferative small intestinal disease, Clin. Microbiol. Infect. 2014 Sep;20(9):908-11.
• 2014
  Brisse S, Brehony C, Conceição T, Cubero M, Glasner C, Le Gouil M, Renvoisé A, Sheppard S, Weinert LA, Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference, Res. Microbiol. 2014 Feb-Mar;165(2):140-53.
• 2013
  Macheras E, Konjek J, Roux AL, Thiberge JM, Bastian S, Leão SC, Palaci M, Sivadon-Tardy V, Gutierrez C, Richter E, Rüsch-Gerdes S, Pfyffer GE, Bodmer T, Jarlier V, Cambau E, Brisse S, Caro V, Rastogi N, Gaillard JL, Heym B, Multilocus sequence typing scheme for the Mycobacterium abscessus complex, Res. Microbiol. 2014 Feb-Mar;165(2):82-90.
• 2013
  Brisse S, Passet V, Haugaard AB, Babosan A, Kassis-Chikhani N, Struve C, Decré D, wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains, J. Clin. Microbiol. 2013 Dec;51(12):4073-8.
• 2013
  Nicolas-Chanoine MH, Robert J, Vigan M, Laouénan C, Brisse S, Mentré F, Jarlier V, , Different factors associated with CTX-M-producing ST131 and non-ST131 Escherichia coli clinical isolates, PLoS ONE 2013;8(9):e72191.
• 2013
  Cantinelli T, Chenal-Francisque V, Diancourt L, Frezal L, Leclercq A, Wirth T, Lecuit M, Brisse S, “Epidemic clones” of Listeria monocytogenes are widespread and ancient clonal groups, J. Clin. Microbiol. 2013 Nov;51(11):3770-9.
• 2013
  Criscuolo A, Brisse S, AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads, Genomics 2013 Nov-Dec;102(5-6):500-6.
• 2013
  Buffet JP, Pisanu B, Brisse S, Roussel S, Félix B, Halos L, Chapuis JL, Vayssier-Taussat M, Deciphering bartonella diversity, recombination, and host specificity in a rodent community, PLoS ONE 2013;8(7):e68956.
• 2013
  Smokvina T, Wels M, Polka J, Chervaux C, Brisse S, Boekhorst J, van Hylckama Vlieg JE, Siezen RJ, Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity, PLoS ONE 2013;8(7):e68731.
• 2013
  Zhou Z, McCann A, Litrup E, Murphy R, Cormican M, Fanning S, Brown D, Guttman DS, Brisse S, Achtman M, Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona, PLoS Genet. 2013 Apr;9(4):e1003471.
• 2013
  Lartigue MF, Nordmann P, Edelstein MV, Cuzon G, Brisse S, Poirel L, Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp, J. Antimicrob. Chemother. 2013 Aug;68(8):1733-6.
• 2013
  Chenal-Francisque V, Diancourt L, Cantinelli T, Passet V, Tran-Hykes C, Bracq-Dieye H, Leclercq A, Pourcel C, Lecuit M, Brisse S, Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance, J. Clin. Microbiol. 2013 Jun;51(6):1868-80.
• 2013
  Fevre C, Almeida AS, Taront S, Pedron T, Huerre M, Prevost MC, Kieusseian A, Cumano A, Brisse S, Sansonetti PJ, Tournebize R, A novel murine model of rhinoscleroma identifies Mikulicz cells, the disease signature, as IL-10 dependent derivatives of inflammatory monocytes, EMBO Mol Med 2013 Apr;5(4):516-30.
• 2013
  N'guessan CA, Brisse S, Le Roux-Nio AC, Poussier S, Koné D, Wicker E, Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot, J. Microbiol. Methods 2013 Mar;92(3):366-74.
• 2013
  Struelens MJ, Brisse S, From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases, Euro Surveill. 2013;18(4):20386.
• 2013
  Supply P, Marceau M, Mangenot S, Roche D, Rouanet C, Khanna V, Majlessi L, Criscuolo A, Tap J, Pawlik A, Fiette L, Orgeur M, Fabre M, Parmentier C, Frigui W, Simeone R, Boritsch EC, Debrie AS, Willery E, Walker D, Quail MA, Ma L, Bouchier C, Salvignol G, Sayes F, Cascioferro A, Seemann T, Barbe V, Locht C, Gutierrez MC, Leclerc C, Bentley SD, Stinear TP, Brisse S, Médigue C, Parkhill J, Cruveiller S, Brosch R, Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis, Nat. Genet. 2013 Feb;45(2):172-9.
• 2012
  Kassis-Chikhani N, Frangeul L, Drieux L, Sengelin C, Jarlier V, Brisse S, Arlet G, Decré D, Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2013 Jan;57(1):618-20.
• 2012
  Haase JK, Brown DJ, Weill FX, Mather H, Foster G, Brisse S, Wain J, Achtman M, Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises, Appl. Environ. Microbiol. 2012 Dec;78(24):8829-33.
• 2012
  Marcade G, Brisse S, Bialek S, Marcon E, Leflon-Guibout V, Passet V, Moreau R, Nicolas-Chanoine MH, The emergence of multidrug-resistant Klebsiella pneumoniae of international clones ST13, ST16, ST35, ST48 and ST101 in a teaching hospital in the Paris region, Epidemiol. Infect. 2013 Aug;141(8):1705-12.
• 2012
  Bialek-Davenet S, Nicolas-Chanoine MH, Decré D, Brisse S, Microbiological and clinical characteristics of bacteraemia caused by the hypermucoviscosity phenotype of Klebsiella pneumoniae in Korea, Epidemiol. Infect. 2013 Jan;141(1):188.
• 2012
  Chassain B, Lemée L, Didi J, Thiberge JM, Brisse S, Pons JL, Pestel-Caron M, Multilocus sequence typing analysis of Staphylococcus lugdunensis implies a clonal population structure, J. Clin. Microbiol. 2012 Sep;50(9):3003-9.
• 2012
  Brisse S, Diancourt L, Laouénan C, Vigan M, Caro V, Arlet G, Drieux L, Leflon-Guibout V, Mentré F, Jarlier V, Nicolas-Chanoine MH, , Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes, J. Clin. Microbiol. 2012 Sep;50(9):2974-81.
• 2012
  Merlet A, Cazanave C, Dutronc H, de Barbeyrac B, Brisse S, Dupon M, Primary liver abscess due to CC23-K1 virulent clone of Klebsiella pneumoniae in France, Clin. Microbiol. Infect. 2012 Sep;18(9):E338-9.
• 2012
  Morris D, Boyle F, Morris C, Condon I, Delannoy-Vieillard AS, Power L, Khan A, Morris-Downes M, Finnegan C, Powell J, Monahan R, Burns K, O'Connell N, Boyle L, O'Gorman A, Humphreys H, Brisse S, Turton J, Woodford N, Cormican M, Inter-hospital outbreak of Klebsiella pneumoniae producing KPC-2 carbapenemase in Ireland, J. Antimicrob. Chemother. 2012 Oct;67(10):2367-72.
• 2012
  Achtman M, Wain J, Weill FX, Nair S, Zhou Z, Sangal V, Krauland MG, Hale JL, Harbottle H, Uesbeck A, Dougan G, Harrison LH, Brisse S,, Multilocus sequence typing as a replacement for serotyping in Salmonella enterica, PLoS Pathog. 2012;8(6):e1002776.
• 2012
  Alanio A, Cabaret O, Sitterlé E, Costa JM, Brisse S, Cordonnier C, Bretagne S, Azole preexposure affects the Aspergillus fumigatus population in patients, Antimicrob. Agents Chemother. 2012 Sep;56(9):4948-50.
• 2012
  Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX, CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
• 2012
  Morris D, McGarry E, Cotter M, Passet V, Lynch M, Ludden C, Hannan MM, Brisse S, Cormican M, Detection of OXA-48 carbapenemase in the pandemic clone Escherichia coli O25b:H4-ST131 in the course of investigation of an outbreak of OXA-48-producing Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2012 Jul;56(7):4030-1.
• 2012
  Breurec S, Guessennd N, Timinouni M, Le TA, Cao V, Ngandjio A, Randrianirina F, Thiberge JM, Kinana A, Dufougeray A, Perrier-Gros-Claude JD, Boisier P, Garin B, Brisse S, Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258, Clin. Microbiol. Infect. 2013 Apr;19(4):349-55.
• 2012
  Landraud L, Jauréguy F, Frapy E, Guigon G, Gouriou S, Carbonnelle E, Clermont O, Denamur E, Picard B, Lemichez E, Brisse S, Nassif X, Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model, Clin. Microbiol. Infect. 2013 Jan;19(1):85-90.
• 2011
  Bourhy P, Collet L, Lernout T, Zinini F, Hartskeerl RA, van der Linden H, Thiberge JM, Diancourt L, Brisse S, Giry C, Pettinelli F, Picardeau M, Human leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features, J. Clin. Microbiol. 2012 Feb;50(2):307-11.
• 2011
  Breurec S, Guillard B, Hem S, Papadakos KS, Brisse S, Huerre M, Monchy D, Oung C, Sgouras DN, Tan TS, Thiberge JM, Vong S, Raymond J, Linz B, Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia, Infect. Genet. Evol. 2011 Dec;11(8):1899-905.
• 2011
  Breurec S, Guillard B, Hem S, Brisse S, Dieye FB, Huerre M, Oung C, Raymond J, Tan TS, Thiberge JM, Vong S, Monchy D, Linz B, Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia, PLoS ONE 2011;6(7):e22058.
• 2011
  Breurec S, Michel R, Seck A, Brisse S, Côme D, Dieye FB, Garin B, Huerre M, Mbengue M, Fall C, Sgouras DN, Thiberge JM, Dia D, Raymond J, Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients, Clin. Microbiol. Infect. 2012 Feb;18(2):153-9.
• 2011
  Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M, Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples, J. Clin. Microbiol. 2011 Sep;49(9):3268-75.
• 2011
  Decré D, Verdet C, Emirian A, Le Gourrierec T, Petit JC, Offenstadt G, Maury E, Brisse S, Arlet G, Emerging severe and fatal infections due to Klebsiella pneumoniae in two university hospitals in France, J. Clin. Microbiol. 2011 Aug;49(8):3012-4.
• 2011
  Clermont O, Gordon DM, Brisse S, Walk ST, Denamur E, Characterization of the cryptic Escherichia lineages: rapid identification and prevalence, Environ. Microbiol. 2011 Sep;13(9):2468-77.
• 2011
  Chenal-Francisque V, Lopez J, Cantinelli T, Caro V, Tran C, Leclercq A, Lecuit M, Brisse S, Worldwide distribution of major clones of Listeria monocytogenes, Emerging Infect. Dis. 2011 Jun;17(6):1110-2.
• 2011
  Fevre C, Passet V, Deletoile A, Barbe V, Frangeul L, Almeida AS, Sansonetti P, Tournebize R, Brisse S, PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma, PLoS Negl Trop Dis 2011 May;5(5):e1052.
• 2011
  Carretto E, Barbarini D, Dijkshoorn L, van der Reijden TJ, Brisse S, Passet V, Farina C, , Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study, Infect. Genet. Evol. 2011 Aug;11(6):1319-26.
• 2011
  Truman RW, Singh P, Sharma R, Busso P, Rougemont J, Paniz-Mondolfi A, Kapopoulou A, Brisse S, Scollard DM, Gillis TP, Cole ST, Probable zoonotic leprosy in the southern United States, N. Engl. J. Med. 2011 Apr;364(17):1626-33.
• 2011
  Breurec S, Fall C, Pouillot R, Boisier P, Brisse S, Diene-Sarr F, Djibo S, Etienne J, Fonkoua MC, Perrier-Gros-Claude JD, Ramarokoto CE, Randrianirina F, Thiberge JM, Zriouil SB, , Garin B, Laurent F, Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes, Clin. Microbiol. Infect. 2011 Apr;17(4):633-9.
• 2011
  Leclercq A, Chenal-Francisque V, Dieye H, Cantinelli T, Drali R, Brisse S, Lecuit M, Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1, Int. J. Food Microbiol. 2011 May;147(1):74-7.
• 2011
  Clermont O, Olier M, Hoede C, Diancourt L, Brisse S, Keroudean M, Glodt J, Picard B, Oswald E, Denamur E, Animal and human pathogenic Escherichia coli strains share common genetic backgrounds, Infect. Genet. Evol. 2011 Apr;11(3):654-62.
• 2011
  Nemec A, Krizova L, Maixnerova M, van der Reijden TJ, Deschaght P, Passet V, Vaneechoutte M, Brisse S, Dijkshoorn L, Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU), Res. Microbiol. 2011 May;162(4):393-404.
• 2011
  Deschaght P, Van Simaey L, Decat E, Van Mechelen E, Brisse S, Vaneechoutte M, Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD), Res. Microbiol. 2011 May;162(4):386-92.
• 2011
  Coulibaly-N'Golo GM, Ekaza E, Coulibaly B, Aka N, N'guessan RK, Thiberge JM, Caro V, Brisse S, Bretin-Dosso M, Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire, J Infect Dev Ctries 2011 Feb;5(1):59-63.
• 2011
  Di Popolo A, Giannouli M, Triassi M, Brisse S, Zarrilli R, Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme, Clin. Microbiol. Infect. 2011 Feb;17(2):197-201.
• 2011
  Breurec S, Zriouil SB, Fall C, Boisier P, Brisse S, Djibo S, Etienne J, Fonkoua MC, Perrier-Gros-Claude JD, Pouillot R, Ramarokoto CE, Randrianirina F, Tall A, Thiberge JM, , Laurent F, Garin B, Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones, Clin. Microbiol. Infect. 2011 Feb;17(2):160-5.
• 2010
  Berthet N, Deletoile A, Passet V, Kennedy GC, Manuguerra JC, Cole ST, Brisse S, Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays, PLoS ONE 2010;5(12):e15243.
• 2010
  Barbier F, Lebeaux D, Hernandez D, Delannoy AS, Caro V, François P, Schrenzel J, Ruppé E, Gaillard K, Wolff M, Brisse S, Andremont A, Ruimy R, High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis, J. Antimicrob. Chemother. 2011 Jan;66(1):29-36.
• 2010
  Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, Didelot X, Paglietti B, Rabsch W, Brisse S, Weill FX, Roumagnac P, Achtman M, Evolution and population structure of Salmonella enterica serovar Newport, J. Bacteriol. 2010 Dec;192(24):6465-76.
• 2010
  Enache-Angoulvant A, Bourget M, Brisse S, Stockman-Pannier C, Diancourt L, François N, Rimek D, Fairhead C, Poulain D, Hennequin C, Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates, J. Clin. Microbiol. 2010 Nov;48(11):4028-34.
• 2010
  Czeher C, Labbo R, Vieville G, Arzika I, Bogreau H, Rogier C, Diancourt L, Brisse S, Ariey F, Duchemin JB, Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger, J. Med. Entomol. 2010 May;47(3):355-66.
• 2010
  Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S, The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool, PLoS ONE 2010;5(4):e10034.
• 2010
  Giannouli M, Cuccurullo S, Crivaro V, Di Popolo A, Bernardo M, Tomasone F, Amato G, Brisse S, Triassi M, Utili R, Zarrilli R, Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone, J. Clin. Microbiol. 2010 Apr;48(4):1223-30.
• 2010
  Delétoile A, Passet V, Aires J, Chambaud I, Butel MJ, Smokvina T, Brisse S, Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing, Res. Microbiol. 2010 Mar;161(2):82-90.
• 2009
  Monfort L, Caro V, Devaux Z, Delannoy AS, Brisse S, Sednaoui P, First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone, J. Clin. Microbiol. 2009 Nov;47(11):3540-5.
• 2009
  Elhani D, Bakir L, Aouni M, Passet V, Arlet G, Brisse S, Weill FX, Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005, Clin. Microbiol. Infect. 2010 Feb;16(2):157-64.
• 2009
  Brisse S, Fevre C, Passet V, Issenhuth-Jeanjean S, Tournebize R, Diancourt L, Grimont P, Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization, PLoS ONE 2009;4(3):e4982.
• 2009
  Pagès F, Peyrefitte CN, Mve MT, Jarjaval F, Brisse S, Iteman I, Gravier P, Tolou H, Nkoghe D, Grandadam M, Aedes albopictus mosquito: the main vector of the 2007 Chikungunya outbreak in Gabon, PLoS ONE 2009;4(3):e4691.
• 2009
  Ah-You N, Gagnevin L, Grimont PA, Brisse S, Nesme X, Chiroleu F, Bui Thi Ngoc L, Jouen E, Lefeuvre P, Vernière C, Pruvost O, Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas, Int. J. Syst. Evol. Microbiol. 2009 Feb;59(Pt 2):306-18.
• 2009
  Brisse S, Pannier C, Angoulvant A, de Meeus T, Diancourt L, Faure O, Muller H, Peman J, Viviani MA, Grillot R, Dujon B, Fairhead C, Hennequin C, Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples, Eukaryotic Cell 2009 Mar;8(3):287-95.
• 2008
  Bui TN, Vernière C, Jarne P, Brisse S, Guérin F, Boutry S, Gagnevin L, Pruvost O, From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes, Appl. Environ. Microbiol. 2009 Feb;75(4):1173-84.
• 2008
  Delétoile A, Decré D, Courant S, Passet V, Audo J, Grimont P, Arlet G, Brisse S, Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing, J. Clin. Microbiol. 2009 Feb;47(2):300-10.
• 2008
  Jaureguy F, Landraud L, Passet V, Diancourt L, Frapy E, Guigon G, Carbonnelle E, Lortholary O, Clermont O, Denamur E, Picard B, Nassif X, Brisse S, Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains, BMC Genomics 2008;9:560.
• 2008
  Ngoc LB, Verniere C, Vital K, Guerin F, Gagnevin L, Brisse S, Ah-You N, Pruvost O, Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri, Mol Ecol Resour 2009 Jan;9(1):125-7.
• 2008
  Vimont S, Mnif B, Fevre C, Brisse S, Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates, J. Med. Microbiol. 2008 Oct;57(Pt 10):1308-10.
• 2008
  Wirth T, Hildebrand F, Allix-Béguec C, Wölbeling F, Kubica T, Kremer K, van Soolingen D, Rüsch-Gerdes S, Locht C, Brisse S, Meyer A, Supply P, Niemann S, Origin, spread and demography of the Mycobacterium tuberculosis complex, PLoS Pathog. 2008;4(9):e1000160.
• 2008
  Ragon M, Wirth T, Hollandt F, Lavenir R, Lecuit M, Le Monnier A, Brisse S, A new perspective on Listeria monocytogenes evolution, PLoS Pathog. 2008;4(9):e1000146.
• 2008
  Nemec A, Krízová L, Maixnerová M, Diancourt L, van der Reijden TJ, Brisse S, van den Broek P, Dijkshoorn L, Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II, J. Antimicrob. Chemother. 2008 Sep;62(3):484-9.
• 2008
  Guigon G, Cheval J, Cahuzac R, Brisse S, MLVA-NET–a standardised web database for bacterial genotyping and surveillance, Euro Surveill. 2008 May;13(19).
• 2007
  Tayeb LA, Lefevre M, Passet V, Diancourt L, Brisse S, Grimont PA, Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences, Res. Microbiol. 2008 Apr;159(3):169-77.
• 2007
  van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, , Guidelines for the validation and application of typing methods for use in bacterial epidemiology, Clin. Microbiol. Infect. 2007 Oct;13 Suppl 3:1-46.
• 2007
  Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S, Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination, Appl. Environ. Microbiol. 2007 Oct;73(20):6601-11.
• 2007
  Salerno A, Delétoile A, Lefevre M, Ciznar I, Krovacek K, Grimont P, Brisse S, Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing, J. Bacteriol. 2007 Nov;189(21):7808-18.
• 2007
  Brisse S, Iteman I, Schuffenecker I, Chikungunya outbreaks, N. Engl. J. Med. 2007 Jun;356(25):2650-2; author reply 2650-2.
• 2007
  Roumagnac P, Brisse S, Weill FX, [Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics], Med Sci (Paris) 2007 May;23(5):455-6.
• 2006
  Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, Chinh NT, Le TA, Acosta CJ, Farrar J, Dougan G, Achtman M, Evolutionary history of Salmonella typhi, Science 2006 Nov;314(5803):1301-4.
• 2006
  Brisse S, Supply P, Brosch R, Vincent V, Gutierrez MC, “A re-evaluation of M. prototuberculosis”: continuing the debate, PLoS Pathog. 2006 Sep;2(9):e95.
• 2006
  Ecker JA, Massire C, Hall TA, Ranken R, Pennella TT, Agasino Ivy C, Blyn LB, Hofstadler SA, Endy TP, Scott PT, Lindler L, Hamilton T, Gaddy C, Snow K, Pe M, Fishbain J, Craft D, Deye G, Riddell S, Milstrey E, Petruccelli B, Brisse S, Harpin V, Schink A, Ecker DJ, Sampath R, Eshoo MW, Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry, J. Clin. Microbiol. 2006 Aug;44(8):2921-32.
• 2006
  Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Bréhin AC, Cubito N, Desprès P, Kunst F, Rey FA, Zeller H, Brisse S, Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak, PLoS Med. 2006 Jul;3(7):e263.
• 2005
  Fevre C, Passet V, Weill FX, Grimont PA, Brisse S, Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.
• 2005
  De Champs C, Vellin JF, Diancourt L, Brisse S, Kemeny JL, Gilain L, Mom T, Laryngeal scleroma associated with Klebsiella pneumoniae subsp. ozaenae, J. Clin. Microbiol. 2005 Nov;43(11):5811-3.
• 2005
  Marqué S, Poirel L, Héritier C, Brisse S, Blasco MD, Filip R, Coman G, Naas T, Nordmann P, Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe, J. Clin. Microbiol. 2005 Sep;43(9):4885-8.
• 2005
  Huys G, Cnockaert M, Nemec A, Dijkshoorn L, Brisse S, Vaneechoutte M, Swings J, Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains, J. Med. Microbiol. 2005 Sep;54(Pt 9):851-6.
• 2005
  Gutierrez MC, Brisse S, Brosch R, Fabre M, Omaïs B, Marmiesse M, Supply P, Vincent V, Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis, PLoS Pathog. 2005 Sep;1(1):e5.
• 2005
  Diancourt L, Passet V, Verhoef J, Grimont PA, Brisse S, Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates, J. Clin. Microbiol. 2005 Aug;43(8):4178-82.
• 2005
  Fevre C, Jbel M, Passet V, Weill FX, Grimont PA, Brisse S, Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.
• 2005
  Carretto E, Barbarini D, Couto I, De Vitis D, Marone P, Verhoef J, De Lencastre H, Brisse S, Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping, Clin. Microbiol. Infect. 2005 Mar;11(3):177-84.
• 2005
  Brisse S, Duijkeren Ev, Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates, Vet. Microbiol. 2005 Feb;105(3-4):307-12.
• 2004
  Nemec A, Dolzani L, Brisse S, van den Broek P, Dijkshoorn L, Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones, J. Med. Microbiol. 2004 Dec;53(Pt 12):1233-40.
• 2004
  Brisse S, Cordevant C, Vandamme P, Bidet P, Loukil C, Chabanon G, Lange M, Bingen E, Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis, J. Clin. Microbiol. 2004 Oct;42(10):4824-7.
• 2004
  Brisse S, van Himbergen T, Kusters K, Verhoef J, Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates, Clin. Microbiol. Infect. 2004 Oct;10(10):942-5.
• 2004
  Brisse S, Issenhuth-Jeanjean S, Grimont PA, Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster, J. Clin. Microbiol. 2004 Aug;42(8):3388-98.
• 2004
  Haeggman S, Löfdahl S, Paauw A, Verhoef J, Brisse S, Diversity and evolution of the class A chromosomal beta-lactamase gene in Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2004 Jul;48(7):2400-8.
• 2004
  van Dessel H, Dijkshoorn L, van der Reijden T, Bakker N, Paauw A, van den Broek P, Verhoef J, Brisse S, Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals, Res. Microbiol. 2004 Mar;155(2):105-12.
• 2004
  Jonas D, Spitzmüller B, Daschner FD, Verhoef J, Brisse S, Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism, Res. Microbiol. 2004 Jan-Feb;155(1):17-23.
• 2003
  Onteniente L, Brisse S, Tassios PT, Vergnaud G, Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing, J. Clin. Microbiol. 2003 Nov;41(11):4991-7.
• 2003
  Kovtunovych G, Lytvynenko T, Negrutska V, Lar O, Brisse S, Kozyrovska N, Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene, Res. Microbiol. 2003 Oct;154(8):587-92.
• 2003
  van Westreenen M, Paauw A, Fluit AC, Brisse S, van Dijk W, Verhoef J, Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao, J. Antimicrob. Chemother. 2003 Sep;52(3):530-2.
• 2003
  Barnabe C, Brisse S, Tibayrenc M, Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses, Infect. Genet. Evol. 2003 Feb;2(3):201-8.
• 2003
  Brisse S, Henriksson J, Barnabé C, Douzery EJ, Berkvens D, Serrano M, De Carvalho MR, Buck GA, Dujardin JC, Tibayrenc M, Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype, Infect. Genet. Evol. 2003 Feb;2(3):173-83.
• 2002
  Wielders CL, Fluit AC, Brisse S, Verhoef J, Schmitz FJ, mecA gene is widely disseminated in Staphylococcus aureus population, J. Clin. Microbiol. 2002 Nov;40(11):3970-5.
• 2002
  Leverstein-van Hall MA, Fluit AC, Paauw A, Box AT, Brisse S, Verhoef J, Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp, J. Clin. Microbiol. 2002 Oct;40(10):3703-11.
• 2002
  van Dessel H, Kamp-Hopmans TE, Fluit AC, Brisse S, de Smet AM, Dijkshoorn L, Troelstra A, Verhoef J, Mascini EM, Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit, J. Hosp. Infect. 2002 Jun;51(2):89-95.
• 2002
  Brisse S, Fussing V, Ridwan B, Verhoef J, Willems RJ, Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates, J. Clin. Microbiol. 2002 Jun;40(6):1977-84.
• 2002
  Brisse S, Stefani S, Verhoef J, Van Belkum A, Vandamme P, Goessens W, Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex, J. Clin. Microbiol. 2002 May;40(5):1743-8.
• 2002
  Henriksson J, Dujardin JC, Barnabé C, Brisse S, Timperman G, Venegas J, Pettersson U, Tibayrenc M, Solari A, Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative, Parasitology 2002 Mar;124(Pt 3):277-86.
• 2001
  Brisse S, Verhoef J, Tibayrenc M, Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages, Int. J. Parasitol. 2001 Sep;31(11):1218-26.
• 2001
  Fitch W, Brisse S, Stevens J, Tibayrenc M, Infectious diseases and the golden age of phylogenetics: an E-debate, Infect. Genet. Evol. 2001 Jul;1(1):69-74.
• 2001
  Wielders CL, Vriens MR, Brisse S, de Graaf-Miltenburg LA, Troelstra A, Fleer A, Schmitz FJ, Verhoef J, Fluit AC, In-vivo transfer of mecA DNA to Staphylococcus aureus [corrected], Lancet 2001 May;357(9269):1674-5.
• 2001
  Brisse S, Verhoef J, Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping, Int. J. Syst. Evol. Microbiol. 2001 May;51(Pt 3):915-24.
• 2000
  Brisse S, Dujardin JC, Tibayrenc M, Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers, Mol. Biochem. Parasitol. 2000 Nov;111(1):95-105.
• 2000
  Wolf B, Rey LC, Brisse S, Moreira LB, Milatovic D, Fleer A, Roord JJ, Verhoef J, Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil, J. Antimicrob. Chemother. 2000 Nov;46(5):757-65.
• 2000
  Brisse S, Milatovic D, Fluit AC, Kusters K, Toelstra A, Verhoef J, Schmitz FJ, Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping, J. Clin. Microbiol. 2000 Oct;38(10):3636-45.
• 2000
  Dujardin JC, Henriksson J, Victoir K, Brisse S, Gamboa D, Arevalo J, Le Ray D, Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?, Mem. Inst. Oswaldo Cruz 2000 Jul-Aug;95(4):527-34.
• 2000
  Schmitz FJ, Fluit AC, Milatovic D, Verhoef J, Heinz HP, Brisse S, In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus, J. Antimicrob. Chemother. 2000 Jul;46(1):109-13.
• 2000
  Barnabé C, Brisse S, Tibayrenc M, Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach, Parasitology 2000 May;120 ( Pt 5):513-26.
• 2000
  Brisse S, Verduin CM, Milatovic D, Fluit A, Verhoef J, Laevens S, Vandamme P, Tümmler B, Verbrugh HA, van Belkum A, Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping, J. Clin. Microbiol. 2000 May;38(5):1876-84.
• 2000
  Milatovic D, Schmitz FJ, Brisse S, Verhoef J, Fluit AC, In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates, Antimicrob. Agents Chemother. 2000 Apr;44(4):1102-7.
• 2000
  Brisse S, Milatovic D, Fluit AC, Verhoef J, Schmitz FJ, Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe, Eur. J. Clin. Microbiol. Infect. Dis. 2000 Jan;19(1):64-8.
• 2000
  Brisse S, Barnabé C, Tibayrenc M, Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis, Int. J. Parasitol. 2000 Jan;30(1):35-44.
• 1999
  Schmitz FJ, Fluit AC, Brisse S, Verhoef J, Köhrer K, Milatovic D, Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates, FEMS Immunol. Med. Microbiol. 1999 Dec;26(3-4):281-7.
• 1999
  Brisse S, Fluit AC, Wagner U, Heisig P, Milatovic D, Verhoef J, Scheuring S, Köhrer K, Schmitz FJ, Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones, Antimicrob. Agents Chemother. 1999 Oct;43(10):2513-6.
• 1999
  Brisse S, Milatovic D, Fluit AC, Verhoef J, Martin N, Scheuring S, Köhrer K, Schmitz FJ, Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins, Antimicrob. Agents Chemother. 1999 Aug;43(8):2051-5.
• 1999
  Bañuls AL, Brisse S, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain, Folia Parasitol. 1999;46(1):10-4.
• 1998
  Brisse S, Barnabé C, Tibayrenc M, Trypanosoma cruzi: How Many Relevant Phylogenetic Subdivisions are There?, Parasitol. Today (Regul. Ed.) 1998 May;14(5):178-9.
• 1998
  Brisse S, Barnabé C, Bañuls AL, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting, Mol. Biochem. Parasitol. 1998 May;92(2):253-63.