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2024Bacteraemia associated with multiple septic localizations caused by Klebsiella pneumoniae sequence type ST660., Eur J Clin Microbiol Infect Dis 2024 Aug; 43(8): 1655-1659.
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2024Retrospective Study of Infections with Corynebacterium diphtheriae Species Complex, French Guiana, 2016-2021., Emerg Infect Dis 2024 Aug; 30(8): 1545-1554.
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2024Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024., Euro Surveill 2024 Aug; 29(31): .
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2024Transient reemergence of Bordetella parapertussis in France in 2022., J Med Microbiol 2024 Jul; 73(7): .
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2024Stability and Qualification of a Legacy Fungal Collection., Biopreserv Biobank 2024 Apr; (): .
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2024Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity., Nucleic Acids Res 2024 Apr; (): .
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2024Intravenous Immunoglobulin in Diphtheritic Polyneuropathy., Pediatr Infect Dis J 2024 Apr; (): .
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2024Corynebacterium diphtheriae and Corynebacterium ulcerans : development of EUCAST methods and generation of data on which to determine breakpoints, Journal of Antimicrobial Chemotherapy, 2024, pp.dkae056. ⟨10.1093/jac/dkae056⟩.
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2024A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex., Microb Genom 2024 Feb; 10(2): .
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2023Multidrug-resistant Corynebacterium diphtheriae in people with travel history from West Africa to France, March to September 2023., Euro Surveill 2023 Nov; 28(46): .
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2023Plugging the leaks: antibiotic resistance at human-animal interfaces in low-resource settings., Front Ecol Environ 2023 Nov; 21(9): 428-434.
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2023A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence, Peer Community Journal, 2023, 3, pp.e76. ⟨10.24072/pcjournal.307⟩.
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2023Corynebacterium ramonii sp. nov., a novel toxigenic member of the Corynebacterium diphtheriae species complex., Res Microbiol 2023 Aug; (): 104113.
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2023Emerging Corynebacterium diphtheriae Species Complex Infections, Réunion Island, France, 2015-2020., Emerg Infect Dis 2023 Aug; 29(8): 1630-1633.
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2023Genomic features of Klebsiella isolates from artisanal ready-to-eat food production facilities., Sci Rep 2023 Jul; 13(1): 10957.
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2023Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance., Microbiol Spectr 2023 Jun; (): e0481222.
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2023Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype, Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩.
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2023Genomic Epidemiology of Corynebacterium diphtheriae in New Caledonia., Microbiol Spectr 2023 Apr; (): e0461622.
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2023Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France., Microbiol Spectr 2023 Apr; (): e0000623.
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2023Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study., Lancet Microbe 2023 Mar; (): .
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2023Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae., Microb Genom 2023 Feb; 9(2): .
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2023Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands., Microb Genom 2023 Jan; 9(1): .
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2022A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings., Nat Microbiol 2022 Dec; 7(12): 2054-2067.
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2022Corynebacterium ulcerans as filamentous branching rods., Clin Microbiol Infect 2022 Nov; (): .
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2022Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods., Gut Microbes ; 14(1): 2118500.
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2022Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)., Microbiol Spectr 2022 Sep; (): e0124222.
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2022A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies., Nat Commun 2022 Jul; 13(1): 3807.
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2022Non-toxigenic Corynebacterium diphtheriae in hallux ulceration., J Infect Dev Ctries 2022 Jun; 16(6): 1118-1121.
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2022Association between the COVID-19 pandemic and pertussis derived from multiple nationwide data sources, France, 2013 to 2020., Euro Surveill 2022 Jun; 27(25): .
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2022Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies., Environ Microbiol 2022 May; (): .
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2022In Vitro and In Vivo Assessments of Two Newly Isolated Bacteriophages against an ST13 Urinary Tract Infection Klebsiella pneumoniae., Viruses 2022 05; 14(5): .
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2022Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017., Sci Rep 2022 Apr; 12(1): 6871.
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2022In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes., BMC Genomics 2022 Mar; 23(1): 235.
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2022Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry., Res Microbiol ; 172(4-5): 103835.
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2022Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147., Microb Genom 2022 01; 8(1): .
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2021Emergence and global spread of Listeria monocytogenes main clinical clonal complex., Sci Adv 2021 Dec; 7(49): eabj9805.
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2021Cutaneous diphtheria: 3 case-reports to discuss determinants of re-emergence in resource-rich settings., Emerg Microbes Infect 2021 Nov; (): 1-7.
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2021Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018., Euro Surveill 2021 Sep; 26(37): .
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2021Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study., Lancet Microbe 2021 Aug; 2(8): e386-e396.
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2021Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity., Gut Microbes ; 13(1): 1939599.
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2021A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019., Environ Int 2021 07; 152(): 106466.
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2021Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae., G3 (Bethesda) 2021 Feb; 11(2): .
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2020Population genomics and antimicrobial resistance in Corynebacterium diphtheriae., Genome Med 2020 11; 12(1): 107.
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2020Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries, Vaccines (Basel) 2020 Jan;8(1).
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2019Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170]., Res Microbiol ; 170(6-7): 300.
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2019Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products., Nat Commun 2019 Aug; 10(1): 3619.
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2019The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
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2019LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe., Microb Genom 2019 Feb; 5(2): .
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2019Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals, Sci. Total Environ. 2019 Jan;662:227-235.
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2018Re-emergence of Corynebacterium diphtheriae, Med Mal Infect 2019 Sep;49(6):463-466.
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2018Rare Elizabethkingia anophelis meningitis case in a Danish male., JMM Case Rep 2018 Aug; 5(8): e005163.
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2018Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing., mBio 2018 04; 9(2): .
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2018Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation, PLoS Negl Trop Dis 2018 Jan;12(1):e0006201.
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2018Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov., Antonie Van Leeuwenhoek 2018 Jan; 111(1): 55-72.
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2017Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014, PLoS ONE 2017;12(11):e0187832.
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2017Citrobacter europaeus sp. nov., isolated from water and human faecal samples., Int J Syst Evol Microbiol 2017 Jan; 67(1): 170-173.
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2016Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity., Nat Genet 2016 Mar; 48(3): 308-313.
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2015Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov., Int J Syst Evol Microbiol 2015 May; 65(Pt 5): 1486-1490.
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2015Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens, Int. J. Syst. Evol. Microbiol. 2015 Mar;65(Pt 3):934-42.
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2014Exploring the diversity of Listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype, Appl. Environ. Microbiol. 2015 Mar;81(5):1813-9.
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2014Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France, PLoS ONE 2014;9(12):e115452.
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2014Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae, PLoS ONE 2014;9(11):e113539.
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2014Resequencing microarray technology for genotyping human papillomavirus in cervical smears, PLoS ONE 2014;9(11):e109301.
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2014Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans, Int. J. Syst. Evol. Microbiol. 2014 Dec;64(Pt 12):4061-7.
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2014Characterization of Listeria monocytogenes strains isolated during 2011-2013 from human infections in Switzerland, Foodborne Pathog. Dis. 2014 Oct;11(10):753-8.
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2014Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola, Int. J. Syst. Evol. Microbiol. 2014 Sep;64(Pt 9):3146-52.
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2014AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries, Front Genet 2014;5:130.
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2014Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference, Res. Microbiol. 2014 Feb-Mar;165(2):140-53.
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2013Multilocus sequence typing scheme for the Mycobacterium abscessus complex, Res. Microbiol. 2014 Feb-Mar;165(2):82-90.
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2013Different factors associated with CTX-M-producing ST131 and non-ST131 Escherichia coli clinical isolates, PLoS ONE 2013;8(9):e72191.
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2013AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads, Genomics 2013 Nov-Dec;102(5-6):500-6.
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2013Deciphering bartonella diversity, recombination, and host specificity in a rodent community, PLoS ONE 2013;8(7):e68956.
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2013Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity, PLoS ONE 2013;8(7):e68731.
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2013Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona, PLoS Genet. 2013 Apr;9(4):e1003471.
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2013A novel murine model of rhinoscleroma identifies Mikulicz cells, the disease signature, as IL-10 dependent derivatives of inflammatory monocytes, EMBO Mol Med 2013 Apr;5(4):516-30.
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2013Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot, J. Microbiol. Methods 2013 Mar;92(3):366-74.
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2013Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis, Nat. Genet. 2013 Feb;45(2):172-9.
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2012Complete nucleotide sequence of the first KPC-2- and SHV-12-encoding IncX plasmid, pKpS90, from Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2013 Jan;57(1):618-20.
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2012CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections, PLoS ONE 2012;7(5):e36995.
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2012Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model, Clin. Microbiol. Infect. 2013 Jan;19(1):85-90.
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2011Human leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features, J. Clin. Microbiol. 2012 Feb;50(2):307-11.
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2011Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples., J Clin Microbiol 2011 Sep; 49(9): 3268-75.
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2011Expansion of European vacA and cagA alleles to East-Asian Helicobacter pylori strains in Cambodia, Infect. Genet. Evol. 2011 Dec;11(8):1899-905.
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2011Evolutionary history of Helicobacter pylori sequences reflect past human migrations in Southeast Asia, PLoS ONE 2011;6(7):e22058.
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2011Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients, Clin. Microbiol. Infect. 2012 Feb;18(2):153-9.
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2011Emerging severe and fatal infections due to Klebsiella pneumoniae in two university hospitals in France, J. Clin. Microbiol. 2011 Aug;49(8):3012-4.
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2011Characterization of the cryptic Escherichia lineages: rapid identification and prevalence, Environ. Microbiol. 2011 Sep;13(9):2468-77.
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2011PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma, PLoS Negl Trop Dis 2011 May;5(5):e1052.
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2011Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1., Int J Food Microbiol 2011 May; 147(1): 74-7.
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2011Widespread carbapenem resistant Acinetobacter baumannii clones in Italian hospitals revealed by a multicenter study, Infect. Genet. Evol. 2011 Aug;11(6):1319-26.
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2011Probable zoonotic leprosy in the southern United States, N. Engl. J. Med. 2011 Apr;364(17):1626-33.
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2011Epidemiology of methicillin-susceptible Staphylococcus aureus lineages in five major African towns: high prevalence of Panton-Valentine leukocidin genes, Clin. Microbiol. Infect. 2011 Apr;17(4):633-9.
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2011Animal and human pathogenic Escherichia coli strains share common genetic backgrounds, Infect. Genet. Evol. 2011 Apr;11(3):654-62.
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2011Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU), Res. Microbiol. 2011 May;162(4):393-404.
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2011Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD), Res. Microbiol. 2011 May;162(4):386-92.
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2011Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire, J Infect Dev Ctries 2011 Feb;5(1):59-63.
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2011Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme, Clin. Microbiol. Infect. 2011 Feb;17(2):197-201.
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2011Epidemiology of methicillin-resistant Staphylococcus aureus lineages in five major African towns: emergence and spread of atypical clones, Clin. Microbiol. Infect. 2011 Feb;17(2):160-5.
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2010Reconstructed ancestral sequences improve pathogen identification using resequencing DNA microarrays, PLoS ONE 2010;5(12):e15243.
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2010High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis, J. Antimicrob. Chemother. 2011 Jan;66(1):29-36.
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2010Evolution and population structure of Salmonella enterica serovar Newport, J. Bacteriol. 2010 Dec;192(24):6465-76.
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2010Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates, J. Clin. Microbiol. 2010 Nov;48(11):4028-34.
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2010Population genetic structure of Anopheles gambiae and Anopheles arabiensis in Niger, J. Med. Entomol. 2010 May;47(3):355-66.
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2010The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool, PLoS ONE 2010;5(4):e10034.
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2010Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone, J. Clin. Microbiol. 2010 Apr;48(4):1223-30.
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2010Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing, Res. Microbiol. 2010 Mar;161(2):82-90.
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2009First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone, J. Clin. Microbiol. 2009 Nov;47(11):3540-5.
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2009Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005, Clin. Microbiol. Infect. 2010 Feb;16(2):157-64.
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2009Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization, PLoS ONE 2009;4(3):e4982.
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2009Aedes albopictus mosquito: the main vector of the 2007 Chikungunya outbreak in Gabon, PLoS ONE 2009;4(3):e4691.
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2009Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas, Int. J. Syst. Evol. Microbiol. 2009 Feb;59(Pt 2):306-18.
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2009Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples, Eukaryotic Cell 2009 Mar;8(3):287-95.
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2008From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes, Appl. Environ. Microbiol. 2009 Feb;75(4):1173-84.
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2008Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing, J. Clin. Microbiol. 2009 Feb;47(2):300-10.
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2008Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains, BMC Genomics 2008;9:560.
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2008Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri, Mol Ecol Resour 2009 Jan;9(1):125-7.
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2008Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates, J. Med. Microbiol. 2008 Oct;57(Pt 10):1308-10.
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2008Origin, spread and demography of the Mycobacterium tuberculosis complex, PLoS Pathog. 2008;4(9):e1000160.
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2008A new perspective on Listeria monocytogenes evolution., PLoS Pathog 2008 Sep; 4(9): e1000146.
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2008Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II, J. Antimicrob. Chemother. 2008 Sep;62(3):484-9.
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2008MLVA-NET–a standardised web database for bacterial genotyping and surveillance, Euro Surveill. 2008 May;13(19).
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2007Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences, Res. Microbiol. 2008 Apr;159(3):169-77.
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2007Guidelines for the validation and application of typing methods for use in bacterial epidemiology, Clin. Microbiol. Infect. 2007 Oct;13 Suppl 3:1-46.
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2007Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination, Appl. Environ. Microbiol. 2007 Oct;73(20):6601-11.
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2007Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing, J. Bacteriol. 2007 Nov;189(21):7808-18.
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2007Chikungunya outbreaks, N. Engl. J. Med. 2007 Jun;356(25):2650-2; author reply 2650-2.
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2007[Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics], Med Sci (Paris) 2007 May;23(5):455-6.
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2006Evolutionary history of Salmonella typhi, Science 2006 Nov;314(5803):1301-4.
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2006“A re-evaluation of M. prototuberculosis”: continuing the debate, PLoS Pathog. 2006 Sep;2(9):e95.
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2006Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry, J. Clin. Microbiol. 2006 Aug;44(8):2921-32.
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2006Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak, PLoS Med. 2006 Jul;3(7):e263.
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2005Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.
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2005Laryngeal scleroma associated with Klebsiella pneumoniae subsp. ozaenae, J. Clin. Microbiol. 2005 Nov;43(11):5811-3.
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2005Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe, J. Clin. Microbiol. 2005 Sep;43(9):4885-8.
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2005Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains, J. Med. Microbiol. 2005 Sep;54(Pt 9):851-6.
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2005Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis, PLoS Pathog. 2005 Sep;1(1):e5.
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2005Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates, J. Clin. Microbiol. 2005 Aug;43(8):4178-82.
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2005Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.
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2005Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping, Clin. Microbiol. Infect. 2005 Mar;11(3):177-84.
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2005Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates, Vet. Microbiol. 2005 Feb;105(3-4):307-12.
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2004Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones, J. Med. Microbiol. 2004 Dec;53(Pt 12):1233-40.
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2004Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis, J. Clin. Microbiol. 2004 Oct;42(10):4824-7.
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2004Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates, Clin. Microbiol. Infect. 2004 Oct;10(10):942-5.
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2004Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster, J. Clin. Microbiol. 2004 Aug;42(8):3388-98.
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2004Diversity and evolution of the class A chromosomal beta-lactamase gene in Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2004 Jul;48(7):2400-8.
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2004Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals, Res. Microbiol. 2004 Mar;155(2):105-12.
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2004Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism, Res. Microbiol. 2004 Jan-Feb;155(1):17-23.
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2003Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing, J. Clin. Microbiol. 2003 Nov;41(11):4991-7.
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2003Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene, Res. Microbiol. 2003 Oct;154(8):587-92.
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2003Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao, J. Antimicrob. Chemother. 2003 Sep;52(3):530-2.
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2003Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses, Infect. Genet. Evol. 2003 Feb;2(3):201-8.
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2003Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype, Infect. Genet. Evol. 2003 Feb;2(3):173-83.
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2002mecA gene is widely disseminated in Staphylococcus aureus population, J. Clin. Microbiol. 2002 Nov;40(11):3970-5.
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2002Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp, J. Clin. Microbiol. 2002 Oct;40(10):3703-11.
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2002Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit, J. Hosp. Infect. 2002 Jun;51(2):89-95.
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2002Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates, J. Clin. Microbiol. 2002 Jun;40(6):1977-84.
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2002Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex, J. Clin. Microbiol. 2002 May;40(5):1743-8.
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2002Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative, Parasitology 2002 Mar;124(Pt 3):277-86.
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2001Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages, Int. J. Parasitol. 2001 Sep;31(11):1218-26.
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2001Infectious diseases and the golden age of phylogenetics: an E-debate, Infect. Genet. Evol. 2001 Jul;1(1):69-74.
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2001In-vivo transfer of mecA DNA to Staphylococcus aureus [corrected], Lancet 2001 May;357(9269):1674-5.
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2001Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping, Int. J. Syst. Evol. Microbiol. 2001 May;51(Pt 3):915-24.
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2000Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers, Mol. Biochem. Parasitol. 2000 Nov;111(1):95-105.
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2000Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil, J. Antimicrob. Chemother. 2000 Nov;46(5):757-65.
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2000Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping, J. Clin. Microbiol. 2000 Oct;38(10):3636-45.
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2000Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?, Mem. Inst. Oswaldo Cruz 2000 Jul-Aug;95(4):527-34.
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2000In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus, J. Antimicrob. Chemother. 2000 Jul;46(1):109-13.
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2000Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach, Parasitology 2000 May;120 ( Pt 5):513-26.
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2000Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping, J. Clin. Microbiol. 2000 May;38(5):1876-84.
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2000In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates, Antimicrob. Agents Chemother. 2000 Apr;44(4):1102-7.
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2000Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe, Eur. J. Clin. Microbiol. Infect. Dis. 2000 Jan;19(1):64-8.
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2000Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis, Int. J. Parasitol. 2000 Jan;30(1):35-44.
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1999Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates, FEMS Immunol. Med. Microbiol. 1999 Dec;26(3-4):281-7.
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1999Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones, Antimicrob. Agents Chemother. 1999 Oct;43(10):2513-6.
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1999Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins, Antimicrob. Agents Chemother. 1999 Aug;43(8):2051-5.
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1999A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain, Folia Parasitol. 1999;46(1):10-4.
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1998Trypanosoma cruzi: How Many Relevant Phylogenetic Subdivisions are There?, Parasitol. Today (Regul. Ed.) 1998 May;14(5):178-9.
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1998A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting, Mol. Biochem. Parasitol. 1998 May;92(2):253-63.