• 2023
  Hugo Caro, Sulyvan Dollin, Anne Biton, Bryan Brancotte, Dimitri Desvillechabrol, Yoann Dufresne, Blaise Li, Etienne Kornobis, Frédéric Lemoine, Nicolas Maillet, Amandine Perrin, Nicolas Traut, Bertrand Néron, Thomas Cokelaer, BioConvert: a comprehensive format converter for life sciences, NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩.
• 2023
  Mateo M, Reynard S, Pietrosemoli N, Perthame E, Journeaux A, Noy K, Germain C, Carnec X, Picard C, Borges-Cardoso V, Hortion J, Lopez-Maestre H, Regnard P, Fellmann L, Vallve A, Barron S, Jourjon O, Lacroix O, Duthey A, Dirheimer M, Daniau M, Legras-Lachuer C, Carbonnelle C, Raoul H, Tangy F, Baize S, Rapid protection induced by a single-shot Lassa vaccine in male cynomolgus monkeys., Nat Commun 2023 Mar; 14(1): 1352.
• 2023
  Dumont L, Lopez Maestre H, Chalmel F, Huber L, Rives-Feraille A, Moutard L, Bateux F, Rondanino C, Rives N, Throughout in vitro first spermatogenic wave: Next-generation sequencing gene expression patterns of fresh and cryopreserved prepubertal mice testicular tissue explants., Front Endocrinol (Lausanne) 2023 ; 14(): 1112834.
• 2022
  Quarato P, Singh M, Bourdon L, Cecere G, , Inheritance and maintenance of small RNA-mediated epigenetic effects., Bioessays 2022 Mar; (): e2100284.
• 2022
  Singh M, Chazal M, Quarato P, Bourdon L, Malabat C, Vallet T, Vignuzzi M, van der Werf S, Behillil S, Donati F, Sauvonnet N, Nigro G, Bourgine M, Jouvenet N, Cecere G, A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection., EMBO Rep 2022 Feb; 23(2): e54341.
• 2022
  Cornes E, Bourdon L, Singh M, Mueller F, Quarato P, Wernersson E, Bienko M, Li B, Cecere G, , piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development., Dev Cell 2022 Jan; 57(2): 180-196.e7.
• 2021
  Piergiuseppe Quarato, Germano Cecere, Global Run-On sequencing to measure nascent transcription in C. elegans, STAR Protocols.
• 2021
  Ibarra-Morales D, Rauer M, Quarato P, Rabbani L, Zenk F, Schulte-Sasse M, Cardamone F, Gomez-Auli A, Cecere G, Iovino N, Histone variant H2A.Z regulates zygotic genome activation., Nat Commun 2021 12; 12(1): 7002.
• 2021
  Germano Cecere, Small RNAs in epigenetic inheritance: from mechanisms to trait transmission, FEBS Lett. 2021 Oct 20. doi: 10.1002/1873-3468.14210. Epub ahead of print. PMID: 34671979..
• 2021
  Singh M, Cornes E, Li B, Quarato P, Bourdon L, Dingli F, Loew D, Proccacia S, Cecere G, , Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis., Nat Commun 2021 06; 12(1): 3492.
• 2021
  Sinha A, Baumgarten S, Distiller A, McHugh E, Chen P, Singh M, Bryant JM, Liang J, Cecere G, Dedon PC, Preiser PR, Ralph SA, Scherf A, , Functional Characterization of the m6A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite., mBio 2021 04; 12(2): .
• 2021
  Quarato P, Singh M, Cornes E, Li B, Bourdon L, Mueller F, Didier C, Cecere G, , Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos., Nat Commun 2021 03; 12(1): 1441.
• 2020
  Barucci G, Cornes E, Singh M, Li B, Ugolini M, Samolygo A, Didier C, Dingli F, Loew D, Quarato P, Cecere G, , Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants., Nat Cell Biol 2020 02; 22(2): 235-245.
• 2018
  Singh M, Beri D, Nageshan RK, Chavaan L, Gadara D, Poojary M, Subramaniam S, Tatu U, , A secreted Heat shock protein 90 of Trichomonas vaginalis., PLoS Negl Trop Dis 2018 05; 12(5): e0006493.
• 2017
  Yadav SC, Kumar R, Kumar J, Singh M, Bera BC, Kumar R, Tatu U, Tehri K, , Antigenic characterization of 52-55kDa protein isolated from Trypanosoma evansi and its application in detection of equine trypanosomosis., Res Vet Sci 2017 Oct; 114(): 455-460.
• 2017
  Bhatnagar N, Girard PM, Lopez-Gonzalez M, Didier C, Collias L, Jung C, Bollens D, Duvivier C, Von Platen C, Scott-Algara D, Weiss L, , Potential Role of Vδ2 γδ T Cells in Regulation of Immune Activation in Primary HIV Infection, Front Immunol 2017;8:1189.
• 2017
  Sarjapuram N, Mekala N, Singh M, Tatu U, , The Potential of Lactobacillus casei and Entercoccus faecium Combination as a Preventive Probiotic Against Entamoeba., Probiotics Antimicrob Proteins 2017 06; 9(2): 142-149.
• 2017
  Romero-Soriano V, Modolo L, Lopez-Maestre H, Mugat B, Pessia E, Chambeyron S, Vieira C, Garcia Guerreiro MP, Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids., Genome Biol Evol 2017 Jun; 9(6): 1450-1470.
• 2017
  Akkouche A, Mugat B, Barckmann B, Varela-Chavez C, Li B, Raffel R, Pélisson A, Chambeyron S, Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries, Mol. Cell 2017 May;66(3):411-419.e4.
• 2017
  Kinnaird JH, Singh M, Gillan V, Weir W, Calder ED, Hostettler I, Tatu U, Devaney E, Shiels BR, , Characterization of HSP90 isoforms in transformed bovine leukocytes infected with Theileria annulata., Cell Microbiol 2017 03; 19(3): .
• 2017
  Lerat E, Fablet M, Modolo L, Lopez-Maestre H, Vieira C, TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes., Nucleic Acids Res 2017 Feb; 45(4): e17.
• 2017
  Nouhin J, Pean P, Madec Y, Chevalier MF, Didier C, Borand L, Blanc FX, Scott-Algara D, Laureillard D, Weiss L, Interleukin-1 receptor antagonist, a biomarker of response to anti-TB treatment in HIV/TB co-infected patients, J. Infect. 2017 May;74(5):456-465.
• 2017
  Lopez-Maestre H, Carnelossi EA, Lacroix V, Burlet N, Mugat B, Chambeyron S, Carareto CM, Vieira C, Identification of misexpressed genetic elements in hybrids between Drosophila-related species., Sci Rep 2017 Jan; 7(): 40618.
• 2017
  Lima L, Sinaimeri B, Sacomoto G, Lopez-Maestre H, Marchet C, Miele V, Sagot MF, Lacroix V, Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads., Algorithms Mol Biol 2017 ; 12(): 2.
• 2016
  Warszawski J, Avettand-Fenoel V, Rouzioux C, Scott-Algara D, Montange T, Didier C, Le Chenadec J, Viard JP, Dollfus C, Blanche S, Buseyne F, Gag-Specific CD8 T-Cell Proliferation Is Associated With Higher Peripheral Blood Levels of Transforming Growth Factor-β and Gut-Homing T Cells in Youths Perinatally Infected With Human Immunodeficiency Virus-1: The ANRS-EP38-IMMIP Study, Open Forum Infect Dis 2017;4(1):ofw239.
• 2016
  Pinzón N, Li B, Martinez L, Sergeeva A, Presumey J, Apparailly F, Seitz H, microRNA target prediction programs predict many false positives, Genome Res. 2017 Feb;27(2):234-245.
• 2016
  Lopez-Maestre H, Brinza L, Marchet C, Kielbassa J, Bastien S, Boutigny M, Monnin D, Filali AE, Carareto CM, Vieira C, Picard F, Kremer N, Vavre F, Sagot MF, Lacroix V, SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence., Nucleic Acids Res 2016 Nov; 44(19): e148.
• 2016
  Scott-Algara D, Warszawski J, Chenadec JL, Didier C, Montange T, Viard JP, Dollfus C, Avettand-Fenoel V, Rouzioux C, Blanche S, Buseyne F, Gag-Specific CD4 T Cell Proliferation, Plasmacytoid Dendritic Cells, and Ethnicity in Perinatally HIV-1-Infected Youths: The ANRS-EP38-IMMIP Study, AIDS Res. Hum. Retroviruses 2017 01;33(1):21-28.
• 2016
  Chevalier MF, Didier C, Girard PM, Manea ME, Campa P, Barré-Sinoussi F, Scott-Algara D, Weiss L, CD4 T-Cell Responses in Primary HIV Infection: Interrelationship with Immune Activation and Virus Burden, Front Immunol 2016;7:395.
• 2015
  Le Chenadec J, Scott-Algara D, Blanche S, Didier C, Montange T, Viard JP, Dollfus C, Avettand-Fenoel V, Rouzioux C, Warszawski J, Buseyne F, Gag-Specific CD4 and CD8 T-Cell Proliferation in Adolescents and Young Adults with Perinatally Acquired HIV-1 Infection Is Associated with Ethnicity – The ANRS-EP38-IMMIP Study, PLoS ONE 2015;10(12):e0144706.
• 2015
  Raman S, Singh M, Tatu U, Suguna K, , First Structural View of a Peptide Interacting with the Nucleotide Binding Domain of Heat Shock Protein 90., Sci Rep 2015 Nov; 5(): 17015.
• 2015
  Weiss L, Chevalier MF, Assoumou L, Paul JL, Alhenc-Gelas M, Didier C, Taibi S, Manea M, Campa P, Girard PM, Costagliola D, , Rosuvastatin is effective to decrease CD8 T-cell activation only in HIV-infected patients with high residual T-cell activation under antiretroviral therapy, J. Acquir. Immune Defic. Syndr. 2015 Nov;.
• 2015
  Mugat B, Akkouche A, Serrano V, Armenise C, Li B, Brun C, Fulga TA, Van Vactor D, Pélisson A, Chambeyron S, MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells, PLoS Genet. 2015 May;11(5):e1005194.
• 2015
  Singh M, Sharma S, Bhattacharya A, Tatu U, , Heat Shock Protein 90 regulates encystation in Entamoeba., Front Microbiol 2015 ; 6(): 1125.
• 2014
  Rochani AK, Mithra C, Singh M, Tatu U, , Heat shock protein 90 as a potential drug target against surra., Parasitology 2014 Aug; 141(9): 1148-55.
• 2014
  Weiss L, Chevalier MF, Assoumou L, Didier C, Girard PM, Piketty C, Costagliola D, Rouzioux C, , T-cell activation positively correlates with cell-associated HIV-DNA level in viremic patients with primary or chronic HIV-1 infection, AIDS 2014 Jul;28(11):1683-7.
• 2014
  Li B, Lopes JS, Foster PG, Embley TM, Cox CJ, Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins, Mol. Biol. Evol. 2014 Jul;31(7):1697-709.
• 2014
  Singh M, Shah V, Tatu U, , A novel C-terminal homologue of Aha1 co-chaperone binds to heat shock protein 90 and stimulates its ATPase activity in Entamoeba histolytica., J Mol Biol 2014 Apr; 426(8): 1786-98.
• 2014
  Cecere G, Hoersch S, O'Keeffe S, Sachidanandam R, Grishok A, Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape, Nat. Struct. Mol. Biol. 2014 Apr;21(4):358-65.
• 2014
  Sayeed SK, Shah V, Chaubey S, Singh M, Alampalli SV, Tatu US, , Identification of heat shock factor binding protein in Plasmodium falciparum., Malar J 2014 Mar; 13(): 118.
• 2014
  Chaubey G, Singh M, Crivellaro F, Tamang R, Nandan A, Singh K, Sharma VK, Pathak AK, Shah AM, Sharma V, Singh VK, Selvi Rani D, Rai N, Kushniarevich A, Ilumäe AM, Karmin M, Phillip A, Verma A, Prank E, Singh VK, Li B, Govindaraj P, Chaubey AK, Dubey PK, Reddy AG, Premkumar K, Vishnupriya S, Pande V, Parik J, Rootsi S, Endicott P, Metspalu M, Lahr MM, van Driem G, Villems R, Kivisild T, Singh L, Thangaraj K, Unravelling the distinct strains of Tharu ancestry, Eur. J. Hum. Genet. 2014 Dec;22(12):1404-12.
• 2014
  Cox CJ, Li B, Foster PG, Embley TM, Civán P, Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions, Syst. Biol. 2014 Mar;63(2):272-9.
• 2013
  Cecere G, Grishok A, A nuclear perspective on RNAi pathways in metazoans, Biochim. Biophys. Acta 2014 Mar;1839(3):223-33.
• 2013
  Cecere G, Hoersch S, Jensen MB, Dixit S, Grishok A, The ZFP-1(AF10)/DOT-1 complex opposes H2B ubiquitination to reduce Pol II transcription, Mol. Cell 2013 Jun;50(6):894-907.
• 2013
  Rochani AK, Singh M, Tatu U, , Heat shock protein 90 inhibitors as broad spectrum anti-infectives., Curr Pharm Des 2013 ; 19(3): 377-86.
• 2012
  Avgousti DC, Cecere G, Grishok A, The conserved PHD1-PHD2 domain of ZFP-1/AF10 is a discrete functional module essential for viability in Caenorhabditis elegans, Mol. Cell. Biol. 2013 Mar;33(5):999-1015.
• 2012
  Cecere G, Zheng GX, Mansisidor AR, Klymko KE, Grishok A, Promoters recognized by forkhead proteins exist for individual 21U-RNAs, Mol. Cell 2012 Sep;47(5):734-45.
• 2011
  Mansisidor AR, Cecere G, Hoersch S, Jensen MB, Kawli T, Kennedy LM, Chavez V, Tan MW, Lieb JD, Grishok A, A conserved PHD finger protein and endogenous RNAi modulate insulin signaling in Caenorhabditis elegans, PLoS Genet. 2011 Sep;7(9):e1002299.
• 2010
  Weiss L, Piketty C, Assoumou L, Didier C, Caccavelli L, Donkova-Petrini V, Levy Y, Girard PM, Burgard M, Viard JP, Rouzioux C, Costagliola D, , Relationship between regulatory T cells and immune activation in human immunodeficiency virus-infected patients interrupting antiretroviral therapy, PLoS ONE 2010;5(7):e11659.
• 2009
  Li B, Dettai A, Lecointre G, rely.py, a python script to detect reliable clades, Mol. Phylogenet. Evol. 2010 Jan;54(1):306-8.
• 2009
  Ropiquet A, Li B, Hassanin A, SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences, C. R. Biol. 2009 Sep;332(9):832-47.
• 2009
  Cecere G, Cogoni C, Quelling targets the rDNA locus and functions in rDNA copy number control, BMC Microbiol. 2009;9:44.
• 2008
  Li B, Dettaï A, Cruaud C, Couloux A, Desoutter-Meniger M, Lecointre G, RNF213, a new nuclear marker for acanthomorph phylogeny, Mol. Phylogenet. Evol. 2009 Feb;50(2):345-63.
• 2007
  Nolan T, Cecere G, Mancone C, Alonzi T, Tripodi M, Catalanotto C, Cogoni C, The RNA-dependent RNA polymerase essential for post-transcriptional gene silencing in Neurospora crassa interacts with replication protein A, Nucleic Acids Res. 2008 Feb;36(2):532-8.