• 2024
  Suzuki Y, Ménager H, Brancotte B, Vernet R, Nerin C, Boetto C, Auvergne A, Linhard C, Torchet R, Lechat P, Troubat L, Cho MH, Bouzigon E, Aschard H, Julienne H, Trait selection strategy in multi-trait GWAS: Boosting SNP discoverability., HGG Adv 2024 Jul; 5(3): 100319.
• 2023
  Francesco Andreace, Pierre Lechat, Yoann Dufresne, Rayan Chikhi, Comparing methods for constructing and representing human pangenome graphs, Genome Biology, 2023, 24 (1), pp.274. ⟨10.1186/s13059-023-03098-2⟩.
• 2023
  Hugo Caro, Sulyvan Dollin, Anne Biton, Bryan Brancotte, Dimitri Desvillechabrol, Yoann Dufresne, Blaise Li, Etienne Kornobis, Frédéric Lemoine, Nicolas Maillet, Amandine Perrin, Nicolas Traut, Bertrand Néron, Thomas Cokelaer, BioConvert: a comprehensive format converter for life sciences, NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩.
• 2023
  Rachel Bellone, Pierre Lechat, Laurence Mousson, Valentine Gilbart, Géraldine Piorkowski, Chloé Bohers, Andres Merits, Etienne Kornobis, Julie Reveillaud, Christophe Paupy, Marie Vazeille, Jean-Philippe Martinet, Yoann Madec, Xavier de Lamballerie, Catherine Dauga, Anna-Bella Failloux, Climate change and vector-borne diseases: a multi-omics approach of temperature-induced changes in the mosquito, Journal of Travel Medicine, 2023, 30 (4), pp.taad062. ⟨10.1093/jtm/taad062⟩.
• 2023
  Bertrand Néron, Rémi Denise, Charles Coluzzi, Marie Touchon, Eduardo P.C. Rocha, Sophie Abby, MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes, Peer Community Journal, 2023, 3, pp.e28. ⟨10.24072/pcjournal.250⟩.
• 2023
  Pierre Lê-Bury, Karen Druart, Cyril Savin, Pierre Lechat, Guillem Mas Fiol, Mariette Matondo, Christophe Bécavin, Olivier Dussurget, Javier Pizarro-Cerdá, Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species, Microbiology Spectrum, 2023, 11 (2), ⟨10.1128/spectrum.03826-22⟩.
• 2021
  Julienne H, Laville V, McCaw ZR, He Z, Guillemot V, Lasry C, Ziyatdinov A, Nerin C, Vaysse A, Lechat P, Ménager H, Le Goff W, Dube MP, Kraft P, Ionita-Laza I, Vilhjálmsson BJ, Aschard H, Multitrait GWAS to connect disease variants and biological mechanisms., PLoS Genet 2021 Aug; 17(8): e1009713.
• 2020
  Volant S, Lechat P, Woringer P, Motreff L, Campagne P, Malabat C, Kennedy S, Ghozlane A, , SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
• 2020
  Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H, Aschard H, JASS: command line and web interface for the joint analysis of GWAS results., NAR Genom Bioinform 2020 Mar; 2(1): lqaa003.
• 2020
  Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, Juraj Michalik, Philippe Jacques, Christophe Flahaut, Frederique Lisacek, Valérie Leclère, Maude Pupin, Norine: update of the nonribosomal peptide resource, Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz1000⟩.
• 2019
  Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawlowski, Tristan Cordier, SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data, BMC Bioinformatics, 2019, 20 (1), pp.88. ⟨10.1186/s12859-019-2663-2⟩.
• 2018
  Bussotti G, Gouzelou E, Côrtes Boité M, Kherachi I, Harrat Z, Eddaikra N, Mottram JC, Antoniou M, Christodoulou V, Bali A, Guerfali FZ, Laouini D, Mukhtar M, Dumetz F, Dujardin JC, Smirlis D, Lechat P, Pescher P, El Hamouchi A, Lemrani M, Chicharro C, Llanes-Acevedo IP, Botana L, Cruz I, Moreno J, Jeddi F, Aoun K, Bouratbine A, Cupolillo E, Späth GF, , Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification., mBio 2018 11; 9(6): .
• 2018
  Schiettekatte O, Vincent AT, Malosse C, Lechat P, Chamot-Rooke J, Veyrier FJ, Picardeau M, Bourhy P, , Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira., Sci Rep 2018 08; 8(1): 11781.
• 2018
  Tristan Cordier, Dominik Forster, Yoann Dufresne, Catarina Martins, Thorsten Stoeck, Jan Pawlowski, Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring, Molecular Ecology Resources, 2018, 18 (6), pp.1381-1391. ⟨10.1111/1755-0998.12926⟩.
• 2018
  David Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P C Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel, CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins, Nucleic Acids Research, 2018, 46 (W1), pp.W246-W251. ⟨10.1093/nar/gky425⟩.
• 2018
  Pericard P, Dufresne Y, Couderc L, Blanquart S, Touzet H, MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes, Bioinformatics 2018 02;34(4):585-591.
• 2016
  Pupin M, Esmaeel Q, Flissi A, Dufresne Y, Jacques P, Leclère V, Norine: A powerful resource for novel nonribosomal peptide discovery, Synth Syst Biotechnol 2016 Jun;1(2):89-94.
• 2015
  Dufresne Y, Noé L, Leclère V, Pupin M, Smiles2Monomers: a link between chemical and biological structures for polymers, J Cheminform 2015;7:62.
• 2015
  Flissi A, Dufresne Y, Michalik J, Tonon L, Janot S, Noé L, Jacques P, Leclère V, Pupin M, Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing, Nucleic Acids Res. 2016 Jan;44(D1):D1113-8.
• 1977
  Luine VN, McEwen BS, Black IB, , Effect of 17 beta-estradiol on hypothalamic tyrosine hydroxylase activity., Brain Res. 1977 Jan; 120(1): 188-92.
• 1976
  Davey MW, Sulkowski E, Carter WA, , Purification and characterization of mouse interferon with novel affinity sorbents., J. Virol. 1976 Feb; 17(2): 439-45.
• 1975
  Sanchez G, Alderete JF, , The effect of host adrenalectomy on the physiology of Trypanosoma rhodesiense., Comp Biochem Physiol A Comp Physiol 1975 Dec; 52(4): 623-6.
• 1975
  Wiesmann UN, DiDonato S, Herschkowitz NN, , Effect of chloroquine on cultured fibroblasts: release of lysosomal hydrolases and inhibition of their uptake., Biochem. Biophys. Res. Commun. 1975 Oct; 66(4): 1338-43.
• 1975
  Barthel W, Markwardt F, , Aggregation of blood platelets by adrenaline and its uptake., Biochem. Pharmacol. 1975 Oct; 24(20): 1903-4.