• 2021
  Julienne H, Laville V, McCaw ZR, He Z, Guillemot V, Lasry C, Ziyatdinov A, Nerin C, Vaysse A, Lechat P, Ménager H, Le Goff W, Dube MP, Kraft P, Ionita-Laza I, Vilhjálmsson BJ, Aschard H, , Multitrait GWAS to connect disease variants and biological mechanisms., PLoS Genet 2021 08; 17(8): e1009713.
• 2020
  Volant S, Lechat P, Woringer P, Motreff L, Campagne P, Malabat C, Kennedy S, Ghozlane A, , SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
• 2020
  Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H, Aschard H, , JASS: command line and web interface for the joint analysis of GWAS results., NAR Genom Bioinform 2020 Mar; 2(1): lqaa003.
• 2020
  Flissi A, Ricart E, Campart C, Chevalier M, Dufresne Y, Michalik J, Jacques P, Flahaut C, Lisacek F, Leclère V, Pupin M, , Norine: update of the nonribosomal peptide resource., Nucleic Acids Res. 2020 01; 48(D1): D465-D469.
• 2019
  Nicolas Maillet, Rapid Peptides Generator: fast and efficient in silico protein digestion, NAR Genomics and Bioinformatics 2020 Mar;2(1):lqz004.
• 2019
  Dufresne Y, Lejzerowicz F, Perret-Gentil LA, Pawlowski J, Cordier T, SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data, BMC Bioinformatics 2019 Feb;20(1):88.
• 2019
  Luigi Caputi, Quentin Carradec, Damien Eveillard, Amos Kirilovsky, Eric Pelletier, Juan J. Pierella Karlusich, Fabio Rocha Jimenez Vieira, Emilie Villar, Samuel Chaffron, Shruti Malviya, Eleonora Scalco, Silvia G. Acinas, Adriana Alberti, Jean‐Marc Aury, Anne‐Sophie Benoiston, Alexis Bertrand, Tristan Biard, Lucie Bittner, Martine Boccara, Jennifer R. Brum, Christophe Brunet, Greta Busseni, Anna Carratalà, Hervé Claustre, Luis Pedro Coelho, Sébastien Colin, Salvatore D'Aniello, Corinne Da Silva, Marianna Del Core, Hugo Doré, Stéphane Gasparini, Florian Kokoszka, Jean‐Louis Jamet, Christophe Lejeusne, Cyrille Lepoivre, Magali Lescot, Gipsi Lima‐Mendez, Fabien Lombard, Julius Lukeš, Nicolas Maillet, Mohammed‐Amin Madoui, Elodie Martinez, Maria Grazia Mazzocchi, Mario B. Néou, Javier Paz‐Yepes, Julie Poulain, Simon Ramondenc, Jean‐Baptiste Romagnan, Simon Roux, Daniela Salvagio Manta, Remo Sanges, Sabrina Speich, Mario Sprovieri, Shinichi Sunagawa, Vincent Taillandier, Atsuko Tanaka, Leila Tirichine, Camille Trottier, Julia Uitz, Alaguraj Veluchamy, Jana Veselá, Flora Vincent, Sheree Yau, Stefanie Kandels‐Lewis, Sarah Searson, Céline Dimier, Marc Picheral, Tara Oceans Coordinators, Peer Bork, Emmanuel Boss, Colomban de Vargas, Michael J. Follows, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Eric Karsenti, Paolo Sordino, Lars Stemmann, Matthew B. Sullivan, Alessandro Tagliabue, Adriana Zingone, Laurence Garczarek, Fabrizio d'Ortenzio, Pierre Testor, Fabrice Not, Maurizio Ribera d'Alcalà, Patrick Wincker, Chris Bowler, Daniele Iudicone, Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems, Global Biogeochemical Cycles 2019 Jan;33(3):391-419.
• 2018
  Bussotti G, Gouzelou E, Côrtes Boité M, Kherachi I, Harrat Z, Eddaikra N, Mottram JC, Antoniou M, Christodoulou V, Bali A, Guerfali FZ, Laouini D, Mukhtar M, Dumetz F, Dujardin JC, Smirlis D, Lechat P, Pescher P, El Hamouchi A, Lemrani M, Chicharro C, Llanes-Acevedo IP, Botana L, Cruz I, Moreno J, Jeddi F, Aoun K, Bouratbine A, Cupolillo E, Späth GF, , Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification., mBio 2018 11; 9(6): .
• 2018
  Schiettekatte O, Vincent AT, Malosse C, Lechat P, Chamot-Rooke J, Veyrier FJ, Picardeau M, Bourhy P, , Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira., Sci Rep 2018 08; 8(1): 11781.
• 2018
  Cordier T, Forster D, Dufresne Y, Martins CI, Stoeck T, Pawlowski J, Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring, Mol Ecol Resour 2018 Jul;.
• 2018
  Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C, CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins, Nucleic Acids Res. 2018 Jul;46(W1):W246-W251.
• 2018
  Pericard P, Dufresne Y, Couderc L, Blanquart S, Touzet H, MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes, Bioinformatics 2018 02;34(4):585-591.
• 2016
  Pupin M, Esmaeel Q, Flissi A, Dufresne Y, Jacques P, Leclère V, Norine: A powerful resource for novel nonribosomal peptide discovery, Synth Syst Biotechnol 2016 Jun;1(2):89-94.
• 2015
  Dufresne Y, Noé L, Leclère V, Pupin M, Smiles2Monomers: a link between chemical and biological structures for polymers, J Cheminform 2015;7:62.
• 2015
  Flissi A, Dufresne Y, Michalik J, Tonon L, Janot S, Noé L, Jacques P, Leclère V, Pupin M, Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing, Nucleic Acids Res. 2016 Jan;44(D1):D1113-8.
• 1977
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• 1976
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• 1975
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• 1975
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