Tools & Software

Software
BIGSdb-Pasteur
Sylvain Brisse
Software
Palmari
Jean-Baptiste Masson • François Laurent
Software
ePeak
Claudia Chica
Tool
HARIBOSS
Max Bonomi
Tool
New LIVE/DEAD fixable viability dyes— more colors, more choices – Invitrogen
Sophie Novault
Software
ROCK
Véronique Legrand • Alexis Criscuolo

Tool
GeneTrek
Thomas Bourgeron

Tool
Find our plasmids and strains on Addgene
David Bikard
Software
SHADE : SHiny Application for Designing Experiments
Pascal Campagne
Tool
Flow Cytometry protocols – handbook
Sophie Novault
Tool
fq2dna
Alexis Criscuolo
Tool
fqCleanER
Alexis Criscuolo
Software
Themis, Nyx, Japet & Héméré
François Laurent
Software
Genuage platform
Jean-Baptiste Masson • Bassam Hajj
Software
Escale syncing software
François Laurent
Software
TRamWAy
François Laurent
Software
JolyTree
Alexis Criscuolo
Tool
Cytometry Memory Aid
Sophie Novault
Tool
Cytometry Protocols
Sophie Novault
Tool
Smartphone-Tablets Applications
Sophie Novault

Software
CRISPRCasFinder
Marie Touchon • Eduardo Rocha

Software
PanACoTA: A modular tool for massive microbial comparative genomics
Eduardo Rocha • Amandine Perrin
Software
MGMM : Missingness Aware Gaussian Mixture Models
Hugues Aschard
Software
RAISS
Hugues Aschard
Software
MinActionPath
Marc Delarue
Software
ProteoCombiner
Julia Chamot-Rooke

Software
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Romain Koszul

Software
Chromosight: A computer vision program for pattern detection in chromosome contact maps
Romain Koszul

Software
Serpentine: a flexible 2D binning method for differential Hi-C analysis
Romain Koszul
Software