Tools & Software
![](https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-fqcleaner-fqcleaner-150x150.png)
Tool
fqCleanER
Alexis Criscuolo
![](https://research.pasteur.fr/wp-content/uploads/2021/08/research_pasteur-themis-nyx-japet-amp-hemere-screenshot-2021-08-21-at-22.25.33-150x150.png)
Software
Themis, Nyx, Japet & Héméré
François Laurent
![](https://research.pasteur.fr/wp-content/uploads/2021/08/research_pasteur-genuage-platform-screenshot-2021-08-18-at-13.43.34-150x150.jpg)
Software
Genuage platform
Jean-Baptiste Masson • Bassam Hajj
![](https://research.pasteur.fr/wp-content/uploads/2021/08/research_pasteur-escale-screenshot-2021-08-21-at-23.38.03-150x150.png)
Software
Escale syncing software
François Laurent
![](https://research.pasteur.fr/wp-content/uploads/2021/08/research_pasteur-tramway-platform-screenshot-2021-08-18-at-13.27.59-150x150.jpg)
Software
TRamWAy
François Laurent
![](https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-jolytree2-150x150.png)
Software
JolyTree
Alexis Criscuolo
![Poster gathering 6 basic cytometry memory aid : what is flow cytometry, controls in flow cytometry, sample preparation tip for cell sorting, antibody titration for flow cytometry, doublets and tandem dyes.](https://research.pasteur.fr/wp-content/uploads/2021/05/research_pasteur-cytometry-memory-aid-1-poster-pfc1red-1-150x150.jpeg)
Tool
Cytometry Memory Aid
Sophie Novault
![](https://research.pasteur.fr/wp-content/uploads/2015/09/research_pasteur-enflow-cytometry-platformfrplateforme-de-cytometrie-pf-nouvault-a5-flow-cell-150x150.jpg)
Tool
Cytometry Protocols
Sophie Novault
![](https://research.pasteur.fr/wp-content/uploads/2015/09/research_pasteur-enflow-cytometry-platformfrplateforme-de-cytometrie-pf-nouvault-a5-flow-cell-150x150.jpg)
Tool
Smartphone-Tablets Applications
Sophie Novault
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genomics-150x150.jpg)
Software
CRISPRCasFinder
Marie Touchon • Eduardo Rocha
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genomics-150x150.jpg)
Software
PanACoTA: A modular tool for massive microbial comparative genomics
Eduardo Rocha • Amandine Perrin
![](https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_statistical-genetics-150x150.jpg)
Software
MGMM : Missingness Aware Gaussian Mixture Models
Hugues Aschard
![](https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_statistical-genetics-150x150.jpg)
Software
RAISS
Hugues Aschard
![](https://research.pasteur.fr/wp-content/uploads/2021/02/research_pasteur-minactionpath-minactionpath-150x150.png)
Software
MinActionPath
Marc Delarue
![](https://research.pasteur.fr/wp-content/uploads/2020/11/research_pasteur-proteocombiner-capture-decran-2020-11-11-a-12.14.27-150x150.jpg)
Software
ProteoCombiner
Julia Chamot-Rooke
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_spatial-genome-150x150.jpg)
Software
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Romain Koszul
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_spatial-genome-150x150.jpg)
Software
Chromosight: A computer vision program for pattern detection in chromosome contact maps
Romain Koszul
![](https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_spatial-genome-150x150.jpg)
Software
Serpentine: a flexible 2D binning method for differential Hi-C analysis
Romain Koszul
![](https://research.pasteur.fr/wp-content/uploads/2020/06/research_pasteur-capture-decran-2020-06-03-a-14.56.15-150x150.png)
Software
COVID-Align
![](https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-billy-huynh-w8kts-mhfue-unsplash-150x150.jpg)
Software
Imjoy – open access platform for deep learning methods
Christophe Zimmer
![](https://research.pasteur.fr/wp-content/uploads/2016/03/research.pasteur.fr_test-150x150.png)
Tool
ARIAweb: a server for automated NMR structure calculation
Benjamin Bardiaux
![](https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-pawel-czerwinski-f-rcfqp7ze4-unsplash-150x150.jpg)
Tool
Python-cwlgen
Hervé Menager
![](https://research.pasteur.fr/wp-content/uploads/2020/02/research_pasteur-m_giy110fig9-150x150.jpeg)
Tool
sequana_coverage standalone application
Thomas Cokelaer
![](https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-single-cell-coursecbutechs-1-150x150.png)
Tool
Single Cell Proteomics
Milena Hasan • Mariette Matondo
![](https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-single-cell-coursecbutechs-1-150x150.png)
Tool
Single Cell Phenotyping – Microscopy
Nathalie Aulner
![](https://research.pasteur.fr/wp-content/uploads/2019/10/research_pasteur-single-cell-genomics-banc-optique-de-lanalyseur-symphony-a5-copy-150x150.jpg)
Tool
Single Cell Phenotyping – Flow Cytometry
Sophie Novault
![](https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-single-cell-coursecbutechs-1-150x150.png)
Tool
Single Cell Data Analysis
Milena Hasan • Marie-Agnès Dillies • Claudia Chica
![](https://research.pasteur.fr/wp-content/uploads/2015/03/genetic-strand-9.25.14-150x150.jpg)
Tool
Single Cell Transcriptomics, Epigenetic and Genomics (GEX, ATAC, ADT, Multiome)
Marc Monot • Carolina Moraes • Claudia Chica
![](https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03590-150x150.jpg)
Tool
crispr.pasteur.fr
David Bikard
![](https://research.pasteur.fr/wp-content/uploads/2020/08/research_pasteur-dna-dark-1-150x150.png)
Tool