Tools & Software
Tool
Shiny-k8s
Elodie Chapeaublanc • Bryan Brancotte

Tool
Spirochase
Elodie Chapeaublanc

Software
RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
Florian Muller

Software
HiCExperiment
Jacques Serizay

Software
OntoWeaver
Johann Dreo
Software
LucaProt: a deep learning algorithm designed to identify RNA viral “dark matter” in global ecosystems.
Xin Hou

Tool
EXOTICS
Hugo Varet • Natalia Pietrosemoli

Software
bdct – Birth-Death Contact-Tracing parameter estimator
Anna Zhukova

Software
treesimulator – Transmission tree generator
Anna Zhukova • Alejandra de Selys Gómez

Software
PyBDEI – Birth-Death Exposed-Infectious parameter estimator
Anna Zhukova
Software
PhyloDeep
Software
Bboot: Bayesian phylogenetic bootstrap
Frédéric Lemoine
Software
DNABarcodeCompatibility bioconductor R-package
Raphaël Etournay
Software
Zellige
Raphaël Etournay

Tool
ABSD – AntiBody Sequence Database
Nicolas Maillet

Software
Comseg – Cell segmentation for spatial transcriptomics data
Florian Muller

Software
ConDor: Detection of Convergent Mutations in Large Protein Alignments
Frédéric Lemoine

Software
OMIQ
Tool
Easy Panel
Tool
smiFISH : a cheap and versatile smFISH approach
Florian Muller
Software
FISH-quant v2: a scalable and modular tool for smFISH image analysis
Florian Muller
Software
SatelliteFinder
Eduardo Rocha
Tool
Guidelines for DC preparation and flow cytometry analysis of mouse nonlymphoid tissues
Sophie Novault
Tool
Cytometry Information (basic and advanced)
Sophie Novault
Tool
Traditional Spectra Viewers and Full Spectrum Viewers
Sophie Novault
Tool
EQA
Fay Betsou
Tool
Find my assay
Fay Betsou
Tool
SPREC v 3.0
Fay Betsou
Tool
Flemmingsome- A Midbody Remnant Proteome database
Neetu Gupta-Rossi • Arnaud Echard
Software