Timeline

Yoann Dufresne
Research Engineer
03 Feb 2025
publication
MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data.
Read more20 Feb 2024
publication
The Backpack Quotient Filter: a dynamic and space-efficient data structure for querying k -mers with abundance
Read more01 Jan 2024
publication
MUSET: Set of utilities for the construction of abundance unitig matrices from sequencing data
Read more30 Nov 2023
01 Sep 2023
29 Aug 2023
03 Jun 2023
29 Jul 2022
publication
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Read more25 Aug 2020
08 Jan 2020
19 Feb 2019
publication
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
Read more15 Jan 2019
19 Jul 2018
17 Jul 2018
publication
Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring
Read more15 Feb 2018
publication
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes
Read more01 Jun 2016
29 Dec 2015
publication
Smiles2Monomers: a link between chemical and biological structures for polymers
Read more02 Nov 2015
publication
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
Read more26 Jun 2015