Group
Phylogeny/phylogenetics [103]
Tool
Spirochase
Elodie Chapeaublanc
Project
CREID Pilot Program “Danube Ticks”
Sarah Temmam
PhD Student
Visiting Scientist
John Tay
Evolutionary dynamics of infectious diseases
PhD student at Institut Pasteur investigating rate heterogeneity, heterotachy, and Markov-modulated models in dengue virus and other human pathogens.
Undergraduate Student
Alejandra de Selys Gómez
Post-doc
Xin Hou
Evolutionary genomics of RNA viruses
I am a computational biologist with a deep fascination for the unfathomable world of viruses and other microbes. I’m fascinated by this hidden universe and the extraordinary diversity that likely lies beyond current knowledge. […]
Software
bdct – Birth-Death Contact-Tracing parameter estimator
Anna Zhukova
Software
treesimulator – Transmission tree generator
Anna Zhukova • Alejandra de Selys Gómez
Software
PyBDEI – Birth-Death Exposed-Infectious parameter estimator
Anna Zhukova
Software
PhyloDeep
Software
Bboot: Bayesian phylogenetic bootstrap
Frédéric Lemoine
Software
ConDor: Detection of Convergent Mutations in Large Protein Alignments
Frédéric Lemoine
Permanent Researcher
Aude Bernheim
Molecular diversity of microbes
What are the fundamental principles that govern immunity across life? How do immune systems function at the molecular level, evolve, and how can understanding them lead to new therapies? These questions drive Aude Bernheim’s […]
Group
Pole PAGE – Phylogeny, Algorithms, (meta)Genomics, Evolution
Julien Guglielmini
Research Engineer
Jérôme Bourret
Bioinformatics and Biostatistics HUB
Non-permanent Researcher