• 2024
  Y. Kesenci, A. Boquet-Pujadas, M. Unser and J. -C. Olivo-Marin, Estimation of Stiffness Maps in Deforming Cells Through Optical Flow with Bounded Curvature, IEEE Transactions on Medical Imaging.
• 2024
  Manich M, Bochet P, Boquet-Pujadas A, Rose T, Laenen G, Guillén N, Olivo-Marin JC, Labruyère E, Fibronectin induces a transition from amoeboid to a fan morphology and modifies migration in Entamoeba histolytica., PLoS Pathog 2024 Jul; 20(7): e1012392.
• 2024
  Rodríguez-Cruz D, Boquet-Pujadas A, López-Muñoz E, Rincón-Heredia R, Paredes-Díaz R, Flores-Fortis M, Olivo-Marin JC, Guillén N, Aguilar-Rojas A, Three-dimensional cell culture conditions promoted the Mesenchymal-Amoeboid Transition in the Triple-Negative Breast Cancer cell line MDA-MB-231., Front Cell Dev Biol 2024 ; 12(): 1435708.
• 2023
  Emma J van Bodegraven, David Pereira, Florent Peglion, Elvira Infante, Yekta Kesenci, Emmanuel Terriac, Juliana Geay, Vanessa Roca, Marina Plays, Laura Soto, Shailaja Seetharaman, Batiste Boëda, Jean-Christophe Olivo-Marin, Atef Asnacios, Aleix Boquet-Pujadas, Jean-Baptiste Manneville, Sandrine Etienne-Manneville, Intermediate filaments promote glioblastoma cell invasion by controlling cell deformability and mechanosensitive gene expression, 2023.
• 2022
  Boquet-Pujadas A, Feaugas T, Petracchini A, Grassart A, Mary H, Manich M, Gobaa S, Olivo-Marin JC, Sauvonnet N, Labruyère E, , 4D live imaging and computational modeling of a functional gut-on-a-chip evaluate how peristalsis facilitates enteric pathogen invasion., Science advances.
• 2022
  Yekta Kesenci; Aleix Boquet-Pujadas; Emma van Bodegraven; Sandrine Étienne-Manneville; Elisabeth Labruyère and Jean-Christophe Olivo-Marin, PDE-Constrained Optimization for Nuclear Mechanics, 2022 IEEE International Conference on Image Processing (ICIP).
• 2022
  Aleix Boquet-Pujadas; Jean-Christophe Olivo-Marin, Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty, IEEE Transactions on Pattern Analysis and Machine Intelligence.
• 2021
  Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin, and Nancy Guillen, Bioimage Analysis and Cell Motility, Patterns, 2021.
• 2020
  Cecilia Grimaldi, Isabel Schumacher*, Aleix Boquet-Pujadas*, Katsiaryna Tarbashevich, Bart Eduard Vos, Jan Bandemer, Jan Schick, Anne Aalto, Jean-Christophe Olivo-Marin, Timo Betz, Erez Raz, E-cadherin focuses protrusion formation at the front of migrating cells by impeding actin flow, Nat Commun. 2020.
• 2020
  Maria Manich, Aleix Boquet-Pujadas, Stéphane Dallongeville, Nancy Guillen, Jean-Christophe Olivo-Marin, A Protocol to Quantify Cellular Morphodynamics: From Cell Labelling to Automatic Image Analysis, Eukaryome Impact on Human Intestine Homeostasis and Mucosal Immunology, 2020.
• 2019
  Aleix Boquet-Pujadas, Cecilia Grimaldi, Erez Raz, Jean-Christophe Olivo-Marin, Tracking and line integration of diffuse cellular subdomains by mesh advection, IEEE EMBC 2019.
• 2019
  Goudarzi M, Boquet-Pujadas A, Olivo-Marin JC, Raz E, Fluid dynamics during bleb formation in migrating cells in vivo, PLoS One 2019.
• 2018
  Aleix Boquet-Pujadas and Jean-Christophe Olivo-Marin, Multiple variational image assimilation for accessible micro-elastography, J. Phys. Conf. Ser. 2018.
• 2017
  Boquet-Pujadas A, Lecomte T, Manich M, Thibeaux R, Labruyère E, Guillén N, Olivo-Marin JC, Dufour AC, , BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells., Sci Rep 2017 08; 7(1): 9178.