Search anything and hit enter
  • Teams
  • Members
  • Projects
  • Events
  • Calls
  • Jobs
  • publications
  • Software
  • Tools
  • Network
  • Equipment

A little guide for advanced search:

  • Tip 1. You can use quotes "" to search for an exact expression.
    Example: "cell division"
  • Tip 2. You can use + symbol to restrict results containing all words.
    Example: +cell +stem
  • Tip 3. You can use + and - symbols to force inclusion or exclusion of specific words.
    Example: +cell -stem
e.g. searching for members in projects tagged cancer
Search for
Count
IN
OUT
Content 1
  • member
  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Clinical Research Assistant
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
Content 2
  • member
  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Clinical Research Assistant
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
Search
Go back
Scroll to top
Share
© Artur Scherf
Scanning Electron Microscopy of Red Blood Cell infected by Plasmodium falciparum.
Scientific Fields
Diseases
Organisms
Applications
Technique
Click to view graph
Connections

About

Bio

04/2016 – present
Post-doctoral researcher, ‘Scherf Lab, Biology of Host-Parasite Interactions Unit’, Institut Pasteur, France
“The role of RNA modifications in post-transcriptional gene regulation of the human malaria parasite, Plasmodium falciparum

09/2013 – 02/2016:  
Ph.D., Red Sea Research Center, King Abdullah University of Science and Technology, Saudi Arabia.
“The genome of Aiptasia and the role of microRNAs in cnidarian-dinoflagellate endosymbiosis”, supervised by Dr. Christian R. Voolstra

09/2012 – 08/2013
MSc., Red Sea Research Center, King Abdullah University of Science and Technology, Saudi Arabia
“The microRNA repertoire of Symbiodinium, the dinoflagellate symbiont of reef-building corals”, supervised by Dr. Christian R. Voolstra

09/2009 – 08/2012
BSc., University of Tübingen, Germany.
“Population structure, growth and production of a recent brachiopod from the Chilean fjord region”, supervised by Dr. Jürgen Laudien and Dr. Nico K. Michiels

Training periods and research experiences

02/2016 – 03/2016
Research assistant, Centre for Organismal Studies Heidelberg (Germany), Dr. Annika Guse

07/2015 – 09/2015
Visiting graduate student, Centre for Organismal Studies Heidelberg (Germany), Dr. Annika Guse

04/2013 – 06/2013
Visiting graduate student, Stanford University School of Medicine (USA), Dr. John R. Pringle

03/2012 – 05/2012
Research Assistant, Alfred-Wegener-Institute, Helmholtz Center for Polar and Marine Research, Bremerhaven (Germany), Dr. Jürgen Laudien

10/2011 – 02/2012
Research Assistant, Centre for Plant Molecular Biology, University of Tübingen (Germany),  Dr. Rita Groß-Hardt

05/2011 – 07/2011
Research Assistant/Scientific Diver, Alfred-Wegener-Institute, Helmholtz Center for Polar and Marine Research, arctic field station AWIPEV, Ny-Alesund (Spitsbergen), Dr. Christian Wienke, Dr. Philipp Fischer, Max Schwanitz

02/2011 – 03/2011
Research Assistant/Scientific Diver, Alfred-Wegener-Institute, Helmholtz Center for Polar and Marine Research, ‘Huinay Field Station’ (Chile), Dr. Jürgen Laudien

10/2010 – 01/2011
Research Assistant, Institute for Animal Evolutionary Ecology, University of Tübingen (Germany), Dr. Nico K. Michiels

08/2010 – 09/2010
Training as ‘Certified German/European Scientific Diver’, Alfred-Wegener-Institute, Helmholtz Center for Polar and Marine Research, Helgoland (Germany), Dr. Philipp Fischer


Research Publications

Wolfowicz I.*, Baumgarten S.*, Voss P.*, Hambleton E.A., Voolstra C.R., Hatta M., Guse A. (2016) Aiptasia sp. larvae as a model to reveal mechanisms of symbiont selection in cnidarians. Scientific Reports 6:32366 (*equal contribution)


Bhattacharya, D., Agrawal, S., Aranda, M., Baumgarten, S., Belcaid, M., Drake, J. L., Erwin, D., Foret, S., Gates, R. D., Gruber, D. F., Kamel, B., Lesser, M. P., Levy, O., Liew, Y. J., MacManes, M., Mass, T., Medina, M., Mehr, S., Meyer, E., Price, D. C., Putnam, H. M., Qiu, H., Shinzato, C., Shoguchi, E., Stokes, A. J., Tambutté, S., Tchernov, D., Voolstra, C. R., Wagner, N., Walker, C. W., Weber, A. P., Weis, V., Zelzion, E., Zoccola, D. & Falkowski, P. G. (2016) Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5:e13288, doi: 10.7554/eLife.13288.

Ryu, T., Seridi, L., Moitinho-Silva, L., Oates, M., Liew, Y. J., Mavromatis, C., Wang, X., Haywood, A., Lafi, F. F., Kupresanin, M., Sougrat, R., Alzahrani, M. A., Giles, E., Ghosheh, Y., Schunter, C., Baumgarten, S., Berumen, M. L., Gao, X., Aranda, M., Foret, S., Gough, J., Voolstra, C. R., Hentschel, U. & Ravasi, T. (2016) Hologenome analysis of two marine sponges with different microbiomes. BMC Genomics 17, 158, doi: 10.1186/s12864-016-2501-0

Parkinson, J. E., Baumgarten, S., Michell, C. T., Baums, I. B., LaJeunesse, T. C. & Voolstra, C. R. (2016) Gene expression variation resolves species and individual strains among coral-associated dinoflagellates within the genus Symbiodinium. Genome Biology and Evolution 8, 665-680

Daniels, C., Baumgarten, S., Yum, L. K., Michell, C. T., Bayer, T., Arif, C., Roder, C., Weil, E. & Voolstra, C. R. (2015) Metatranscriptome analysis of the reef-building coral Orbicella faveolata indicates holobiont response to coral disease. Frontiers in Marine Science, doi: 10.3389/fmars.2015.00062

Baumgarten, S., Simakov, O., Esherick, L. Y., Liew, Y. J., Lehnert, E. M., Michell, C. T., Li, Y., Hambleton, E. A., Guse, A., Oates, M. E., Gough, J., Weis, V. M., Aranda, M., Pringle, J. R. & Voolstra, C. R. (2015) The genome of Aiptasia, a sea anemone model for coral symbiosis. Proceedings of the National Academy of Science of the U. S. A., 112, 11893-11898

Liew, Y. J., Aranda, M., Carr, A., Baumgarten, S., Zoccola, D., Tambutté, S., Allemand, D., Micklem, G. & Voolstra, C. R. (2014) Identification of microRNAs in the coral Stylophora pistillata. PLoS One 9(3): e91101. doi:10.1371/journal.pone.0091101

Baumgarten, S., Bayer, T., Aranda, M., Liew, Y., Carr, A., Micklem, G. & Voolstra, C. R. (2013) Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. BMC Genomics 14, 704, doi:10.1186/1471-2164-14-704

Baumgarten, S., Laudien, J., Jantzen, C., Häussermann, V. & Försterra, G. (2014) Population structure, growth and production of a recent brachiopod from the Chilean fjord region. Marine Ecology 35, 401–413