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2021Generation of gene-level resolution chromosome contact maps in bacteria and archaea., STAR Protoc 2021 Jun; 2(2): 100512.
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2021MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut., Elife 2021 Feb; 10(): .
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2020Euryarchaeal genomes are folded into SMC-dependent loops and domains, but lack transcription-mediated compartmentalization., Mol Cell 2021 02; 81(3): 459-472.e10.
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2020Serpentine: a flexible 2D binning method for differential Hi-C analysis., Bioinformatics 2020 Jun; 36(12): 3645-3651.
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2020Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners, Mol. Cell 2020 Jan;.
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2019FACT mediates cohesin function on chromatin, Nat. Struct. Mol. Biol. 2019 Oct;26(10):970-979.
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2019MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries, Front Genet 2019;10:753.
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2019Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis, Mol. Cell 2019 07;75(1):131-144.e3.
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2018Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin, Nat Commun 2018 Oct;9(1):4268.
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2018Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota, Meth. Enzymol. 2018;612:183-195.
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