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GRAAL: genome assembly from chromosome contact frequencies

QuickPALM: Reconstruction of PALM/STORM super-resolution microscopy images

© Research

Software

FISH-quant: automatically counting transcripts in RNA-FISH images

Team: Imaging and Modeling

Team: Quantitative RNA imaging

Project leader: Christophe Zimmer

Member: Florian Muller

Scientific Fields

Diseases

Organisms

Applications

Technique

Scientific Fields

Application

Research Applications and Biot

Technique

Starting Date

11

Sep 2015

Status

Completed

Members

2

Structures

2

About

A free Matlab-based toolbox to detect and count individual mRNA transcripts in single cells by automatic analysis of 3D RNA-FISH images. Software is available freely together with extensive instructions at : https://code.google.com/p/fish-quant/.

The software is described in Mueller et al. Nature Methods (2013).

Published on: 11 Sep 2015 • Modified on: 10 Apr 2024