Structure Content

Program_project: Archivé: PIBnet – Pasteur International Bioresources network

Tous Publications

2025
Mendaña A, Santos-Merino M, Gutiérrez-Lanza R, Domínguez-Quintero M, Medina-Méndez JM, González-Guerra A, Campa V, Baez M, Ducos-Galand M, López-Igual R, Volke DC, Gugger M, Nikel PI, Mazel D, de la Cruz F, Fernández-López R, Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria., Proc Natl Acad Sci U S A 2025 Sep; 122(36): e2506928122.
2025
Saraf A, Aleksovski B, Blondet E, Krstić S, Criscuolo A, Gugger M, Expanding species diversity in the monotypic genera Thalassoporum and Tumidithrix (Pseudanabaenales, Cyanobacteriota) with the description of Thalassoporum mexicanum sp. nov. and Tumidithrix helvetica sp. nov., Int J Syst Evol Microbiol 2025 Aug; 75(8): .
2025
Antonaru LA, Rad-Menéndez C, Mbedi S, Sparmann S, Pope M, Oliver T, Wu S, Green DH, Gugger M, Nürnberg DJ, Evolution of far-red light photoacclimation in cyanobacteria., Curr Biol 2025 Jun; 35(11): 2539-2553.e4.
2025
Aleksovski B, Saraf A, Stefanoska E, Kiprijanovska S, Vuchurević A, Pakovski K, Dimovski A, Gugger M, Krstic S, Molecular and cytomorphological characterization of Pseudanabaena vesniana sp. nov. and Pseudanabaena suomiensis var. macedonica var. nov. (Pseudanabaenales, Cyanobacteriota) with evidence of microcystin-producing Pseudanabaena taxa, J Phycol. 2025 Aug 14. doi: 10.1111/jpy.70064..
2025
Salim Chibani, Elhem Yacoub, Safa Boujemaa, Helmi Mardassi, J. Guglielmini, Amaury Vaysse, Nadine Khadraoui, Béhija Mlik, Boutheina Ben Abdelmoumen Mardassi, A genome-wide investigation of Mycoplasma hominis genes associated with gynecological infections or infertility, Frontiers in Microbiology, In press, 16, pp.1561378. ⟨10.3389/fmicb.2025.1561378⟩.
2025
Apolline Bruley, Juliette Gaëtan, Muriel Gugger, Claire Pancrace, Maxime Millet, Geoffroy Gaschignard, Manuela Dezi, Jean-François Humbert, Julie Leloup, Fériel Skouri-Panet, Isabelle Callebaut, Karim Benzerara, Elodie Duprat, Diel changes in the expression of a marker gene and candidate genes for intracellular amorphous CaCO3 biomineralization in Microcystis, Peer Community Journal, 2025, 5, pp.e18. ⟨10.24072/pcjournal.516⟩.
2025
Vagstad AL, Lakis E, Csizi KS, Walls W, Richter D, Soo Lee K, Stocker R, Gugger M, Broderick WE, Broderick JB, Reiher M, Piel J, Mechanistic Insights Into Post-Translational α-Keto-β-Amino Acid Formation by a Radical S-Adenosyl Methionine Peptide Splicease., Angew Chem Int Ed Engl 2025 Feb; 64(6): e202418054.
2025
Saraf A, Blondet E, Boullié A, Criscuolo A, Gugger M, Insight on the heterocyte patterning and the proheterocyte division in the toxic cyanobacterium Kaarinaea lacus gen. nov., sp. nov., and its genomic potential for natural products., Harmful Algae 2025 Feb; 142(): 102792.
2024
Hubrich F, Kandy SK, Chepkirui C, Padhi C, Mordhorst S, Moosmann P, Zhu T, Gugger M, Chekan JR, Piel J, Ribosomal peptides with polycyclic isoprenoid moieties., Chem 2024 Oct; 10(10): 3224-3242.
2024
Brault A, Pontais I, Enouf V, Debeuret C, Bloch E, Paireau J, Rameix-Welti MA, White M, Baudemont G, Lina B, Parent du Châtelet I, Casalegno JS, Vaux S, Cauchemez S, Effect of nirsevimab on hospitalisations for respiratory syncytial virus bronchiolitis in France, 2023-24: a modelling study., Lancet Child Adolesc Health 2024 Oct; 8(10): 721-729.
2024
Simon B Gressens, Vincent Enouf, Antoine Créon, Giovanna Melica, Francois Lemonnier, Jehan Dupuis, Taoufik El Gnaoui, Mohammad Hammoud, Karim Belhadj, Corinne Haioun, Anne Le Bouter, Sebastien Gallien, Fabien Le Bras, Slim Fourati, Serological responses against seasonal influenza viruses in patients with multiple myeloma treated or untreated with daratumumab after two doses of tetravalent vaccine, International Journal of Infectious Diseases, 2024, 146, pp.107108. ⟨10.1016/j.ijid.2024.107108⟩.
2024
Charlotte Laniece Delaunay, Clara Mazagatos, Iván Martínez-Baz, Gergő Túri, Luise Goerlitz, Lisa Domegan, Adam Meijer, Ana Paula Rodrigues, Noémie Sève, Maja Ilić, Neus Latorre-Margalef, Mihaela Lazar, Marine Maurel, Aryse Melo, Blanca Andreu Ivorra, Itziar Casado, Judit Krisztina Horváth, Silke Buda, Charlene Bennett, Marit de Lange, Raquel Guiomar, Vincent Enouf, Ivan Mlinarić, Tove Samuelsson Hagey, Sorin Dinu, Mercedes Rumayor, Jesús Castilla, Beatrix Oroszi, Ralf Dürrwald, Joan O’donnell, Mariëtte Hooiveld, Verónica Gomez, Alessandra Falchi, Sanja Kurečić Filipović, Lena Dillner, Rodica Popescu, Sabrina Bacci, Marlena Kaczmarek, Esther Kissling, COVID-19 Vaccine Effectiveness in Autumn and Winter 2022 to 2023 Among Older Europeans, JAMA Network Open, 2024, 7 (7), pp.e2419258. ⟨10.1001/jamanetworkopen.2024.19258⟩.
2024
Charlotte Lanièce Delaunay, Iván Martínez-Baz, Noémie Sève, Lisa Domegan, Clara Mazagatos, Silke Buda, Adam Meijer, Irina Kislaya, Catalina Pascu, Annasara Carnahan, Beatrix Oroszi, Maja Ilić, Marine Maurel, Aryse Melo, Virginia Sandonis Martín, Camino Trobajo-Sanmartín, Vincent Enouf, Adele Mckenna, Gloria Pérez-Gimeno, Luise Goerlitz, Marit de Lange, Ana Paula Rodrigues, Mihaela Lazar, Neus Latorre-Margalef, Gergő Túri, Jesús Castilla, Alessandra Falchi, Charlene Bennett, Virtudes Gallardo, Ralf Dürrwald, Dirk Eggink, Raquel Guiomar, Rodica Popescu, Maximilian Riess, Judit Krisztina Horváth, Itziar Casado, Mª del Carmen García, Mariëtte Hooiveld, Ausenda Machado, Sabrina Bacci, Marlena Kaczmarek, Esther Kissling, COVID-19 vaccine effectiveness against symptomatic infection with SARS-CoV-2 BA.1/BA.2 lineages among adults and adolescents in a multicentre primary care study, Europe, December 2021 to June 2022, Eurosurveillance, 2024, 29 (13), pp.2300403. ⟨10.2807/1560-7917.es.2024.29.13.2300403⟩.
2024
Marine Maurel, Jennifer Howard, Esther Kissling, Francisco Pozo, Gloria Pérez-Gimeno, Silke Buda, Noémie Sève, Adele Mckenna, Adam Meijer, Ana Paula Rodrigues, Iván Martínez-Baz, Ivan Mlinarić, Neus Latorre-Margalef, Gergő Túri, Mihaela Lazăr, Clara Mazagatos, Aitziber Echeverria, Stephen Abela, Marc Bourgeois, Ausenda Machado, Ralf Dürrwald, Goranka Petrović, Beatrix Oroszi, Ligita Jancoriene, Alexandru Marin, Petr Husa, Roisin Duffy, Frederika Dijkstra, Virtudes Gallardo García, Luise Goerlitz, Vincent Enouf, Charlene Bennett, Mariëtte Hooiveld, Raquel Guiomar, Camino Trobajo-Sanmartín, Vesna Višekruna Vučina, Tove Samuelsson Hagey, Ana Sofía Lameiras Azevedo, Jesús Castilla, Gerd Xuereb, Bénédicte Delaere, Verónica Gómez, Kristin Tolksdorf, Sabrina Bacci, Nathalie Nicolay, Marlena Kaczmarek, Angela Mc Rose, Interim 2023/24 influenza A vaccine effectiveness: VEBIS European primary care and hospital multicentre studies, September 2023 to January 2024, Eurosurveillance, 2024, 29 (8), ⟨10.2807/1560-7917.es.2024.29.8.2400089⟩.
2024
Marine Maurel, Francisco Pozo, Gloria Pérez‐gimeno, Silke Buda, Noémie Sève, Beatrix Oroszi, Mariette Hooiveld, Verónica Gomez, Lisa Domegan, Iván Martínez‐baz, Maja Ilić, Anna Sara Carnahan, Maria Elena Mihai, Ana Martínez, Luise Goerlitz, Vincent Enouf, Judit Krisztina Horváth, Frederika Dijkstra, Ana Paula Rodrigues, Charlene Bennett, Camino Trobajo‐sanmartín, Ivan Mlinarić, Neus Latorre‐margalef, Alina Ivanciuc, Aurora Lopez, Ralf Dürrwald, Alessandra Falchi, Gergő Túri, Adam Meijer, Aryse Melo, Joan O'Donnell, Jesús Castilla, Vesna Višekruna Vučina, Tove Samuelsson Hagey, Mihaela Lazar, Marlena Kaczmarek, Sabrina Bacci, Esther Kissling, Influenza vaccine effectiveness in Europe: Results from the 2022–2023 VEBIS (Vaccine Effectiveness, Burden and Impact Studies) primary care multicentre study, Influenza and Other Respiratory Viruses, 2024, 18 (1), pp.e13243. ⟨10.1111/irv.13243⟩.
2023
Margaux M I Meslé, Mary Sinnathamby, Piers Mook, Richard Pebody, Vincent Enouf, Seasonal and inter‐seasonal RSV activity in the European Region during the COVID‐19 pandemic from autumn 2020 to summer 2022, Influenza and Other Respiratory Viruses, 2023, 17 (11), pp.e13219. ⟨10.1111/irv.13219⟩.
2023
Marine Wasniewski, Franck Boué, Céline Richomme, Etienne Simon-Lorière, Sylvie Van Der Werf, Flora Donati, Vincent Enouf, Yannick Blanchard, Véronique Beven, Estelle Leperchois, Bryce Leterrier, Sandrine Corbet, Meriadeg Le Gouil, Elodie Monchatre-Leroy, Evelyne Picard-Meyer, Investigations into SARS-CoV-2 and other coronaviruses on mink farms in France late in the first year of the COVID-19 pandemic, PLoS ONE, 2023, 18 (8), pp.e0290444. ⟨10.1371/journal.pone.0290444⟩.
2023
Shishido TK, Delbaje E, Wahlsten M, Vuori I, Jokela J, Gugger M, Fiore MF, Fewer DP, A cylindrospermopsin-producing cyanobacterium isolated from a microbial mat in the Baltic Sea, Toxicon 2023 Jul; 232: 107205.
2023
Gugger M, Boullié A, Laurent T, Cyanotoxins and Other Bioactive Compounds from the Pasteur Cultures of Cyanobacteria (PCC), Toxins (Basel) 2023 Jun 9;15(6):388. .
2023
G N Gbaguidi, L Aubert, J Schaeffer, L Fagour, A Dubremetz, Vincent Enouf, M-H Glaudon-Louveau de la Guigneraye, F Nestour, J Rosine, G dos Santos, Emergence and evolution of the Omicron SARS-CoV-2 variant in the island of Martinique, Infectious Diseases Now, 2023, 53 (4), pp.104690. ⟨10.1016/j.idnow.2023.104690⟩.
2023
Gaëtan J, Halary S, Millet M, Bernard C, Duval C, Hamlaoui S, Hecquet A, Gugger M, Marie B, Mehta N, Moreira D, Skouri-Panet F, Travert C, Duprat E, Leloup J, Benzerara K, Widespread formation of intracellular calcium carbonates by the bloom-forming cyanobacterium Microcystis, Environ Microbiol. 2023 Mar;25(3):751-765.
2023
Marine Wasniewski, Franck Boué, Céline Richomme, Etienne Simon-Lorière, Sylvie van der Werf, Flora Donati, Vincent Enouf, Yannick Blanchard, Véronique Beven, Estelle Leperchois, Bryce Leterrier, Sandrine Corbet, Meriadeg Le Gouil, Elodie Monchatre-Leroy, Evelyne Picard-Meyer, Investigations on SARS-CoV-2 and other coronaviruses in mink farms in France at the end of the first year of COVID-19 pandemic, 2023.
2023
Hannah Frost, Julien Guglielmini, Sebastian Duchêne, Jake Lacey, Martina Sanderson-Smith, Andrew Steer, Mark Walker, Anne Botteaux, Mark Davies, Pierre Smeesters, Promiscuous evolution of Group A Streptococcal M and M-like proteins, Microbiology, 2023, 169 (1), pp.001280. ⟨10.1099/mic.0.001280⟩.
2022
Harimanana A, Rakotondrasoa A, Rivoarilala LO, Criscuolo A, Opatowski L, Rakotomanana EFN, Herindrainy P, Collard JM, Crucitti T, Huynh BT, Neonatal acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the community of a low-income country (NeoLIC): protocol for a household cohort study in Moramanga, Madagascar., BMJ Open 2022 Sep; 12(9): e061463.
2022
Kim Tiam S, Comte K, Dalle C, Delagrange M, Djediat C, Ducos B, Duval C, Feilke K, Hamlaoui S, Le Manach S, Setif P, Yéprémian C, Marie B, Kirilovsky D, Gugger M, Bernard C, , The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress., Harmful Algae 2022 Aug; 117: 102285.
2022
Kämpfer P, Lipski A, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Bacillus rhizoplanae sp. nov. from maize roots., Int J Syst Evol Microbiol 2022 Jul; 72(7): .
2022
Adomako M, Ernst D, Simkovsky R, Chao YY, Wang J, Fang M, Bouchier C, Lopez-Igual R, Mazel D, Gugger M, Golden SS, Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains, mBio 2022 Jun; 13(3): e0086222.
2022
Legrand V, Kergrohen T, Joly N, Criscuolo A, ROCK: digital normalization of whole genome sequencing data, JOSS 2022 May;7(73):3790.
2022
Kämpfer P, Glaeser SP, Busse HJ, McInroy JA, Clermont D, Criscuolo A, , Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere., Int J Syst Evol Microbiol 2022 May; 72(5): .
2022
Palma F, Mangone I, Janowicz A, Moura A, Chiaverini A, Torresi M, Garofolo G, Criscuolo A, Brisse S, Di Pasquale A, Cammà C, Radomski N, , In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes., BMC Genomics 2022 Mar; 23(1): 235.
2022
Benzerara K, Duprat E, Bitard-Feildel T, Caumes G, Cassier-Chauvat C, Chauvat F, Dezi M, Diop SI, Gaschignard G, Görgen S, Gugger M, Lopez-Garcia P, Millet M, Skouri-Panet F, Moreira D, Callebault I, A new gene family diagnostic for intracellular biomineralization of amorphous Ca-carbonates by cyanobacteria, Genome Biol Evol 2022 Mar 2;14(3):evac026 .
2022
Hubrich F, Bosch NM, Chepkirui C, Morinaka BI, Rust M, Gugger M, Robinson SL, Vagstad AL, Piel J, Ribosomally derived lipopeptides containing distinct fatty acyl moieties, PNAS January 18, 2022 119 (3) e2113120119; .
2021
Kämpfer P, Busse HJ, Clermont D, Criscuolo A, Glaeser SP, , Devosia equisanguinis sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2021 Nov; 71(11): .
2021
Kämpfer P, Busse HJ, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays., Int J Syst Evol Microbiol 2021 Oct; 71(10): .
2021
Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S, , Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae., J Clin Microbiol 2021 Sep; (): JCM0158121.
2021
Charmet T, Schaeffer L, Grant R, Galmiche S, Chény O, Von Platen C, Maurizot A, Rogoff A, Omar F, David C, Septfons A, Cauchemez S, Gaymard A, Lina B, Lefrancois LH, Enouf V, van der Werf S, Mailles A, Levy-Bruhl D, Carrat F, Fontanet A, , Impact of original, B.1.1.7, and B.1.351/P.1 SARS-CoV-2 lineages on vaccine effectiveness of two doses of COVID-19 mRNA vaccines: Results from a nationwide case-control study in France., Lancet Reg Health Eur 2021 Sep; 8(): 100171.
2021
Badell E, Alharazi A, Criscuolo A, Almoayed KAA, Lefrancq N, Bouchez V, Guglielmini J, Hennart M, Carmi-Leroy A, Zidane N, Pascal-Perrigault M, Lebreton M, Martini H, Salje H, Toubiana J, Dureab F, Dhabaan G, Brisse S, Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study., Lancet Microbe 2021 Aug; 2(8): e386-e396.
2021
Aujoulat F, Mazuet C, Criscuolo A, Popoff MR, Enault C, Diancourt L, Jumas-Bilak E, Lavigne JP, Marchandin H, Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names., Syst Appl Microbiol 2021 Jul; 44(5): 126235.
2021
Uwimana A, Legrand E, Stokes BH, Ndikumana JM, Warsame M, Umulisa N, Ngamije D, Munyaneza T, Mazarati JB, Munguti K, Campagne P, Criscuolo A, Ariey F, Murindahabi M, Ringwald P, Fidock DA, Mbituyumuremyi A, Menard D, , Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda., Nat Med 2021 Jun; 27(6): 1113-1115.
2021
Baptiste Colcombet-Cazenave, Karen Druart, Crystel Bonnet, Christine Petit, Olivier Spérandio, Julien Guglielmini, Nicolas Wolff, Phylogenetic analysis of Harmonin homology domains, BMC Bioinformatics, 2021, 22 (1), pp.190. ⟨10.1186/s12859-021-04116-5⟩.
2021
Purushothaman M, Sarkar S, Morita M, Gugger M, Schmidt EW, Morinaka BI, Genome-Mining-Based Discovery of the Cyclic Peptide Tolypamide and TolF, a Ser/Thr Forward O-Prenyltransferase, Angew Chem Int Ed Engl 2021 04; 60(15): 8460-8465.
2021
Sermet-Gaudelus I, Temmam S, Huon C, Behillil S, Gajdos V, Bigot T, Lurier T, Chrétien D, Backovic M, Delaunay-Moisan A, Donati F, Albert M, Foucaud E, Mesplées B, Benoist G, Faye A, Duval-Arnould M, Cretolle C, Charbit M, Aubart M, Auriau J, Lorrot M, Kariyawasam D, Fertitta L, Orliaguet G, Pigneur B, Bader-Meunier B, Briand C, Enouf V, Toubiana J, Guilleminot T, van der Werf S, Leruez-Ville M, Eloit M, Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 Apr; 26(13): .
2021
Kämpfer P, Glaeser SP, McInroy JA, Clermont D, Criscuolo A, Busse HJ, , Pseudomonas carbonaria sp. nov., isolated from charcoal., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
2021
Schumann P, Kalensee F, Cao J, Criscuolo A, Clermont D, Köhler JM, Meier-Kolthoff JP, Neumann-Schaal M, Tindall BJ, Pukall R, , Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
2021
Kämpfer P, Busse HJ, Glaeser SP, Clermont D, Criscuolo A, Mietke H, , Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011., Int J Syst Evol Microbiol 2021 Mar; 71(3): .
2021
Rimet F, Aylagas E, Borja A, Bouchez A, Canino A, Chauvin C, Chonova T, ....Gugger M....et al., Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life, Metabarcoding and Metagenomics 5: 17–33 .
2021
Jamet A, Guglielmini J, Brancotte B, Coureuil M, Euphrasie D, Meyer J, Roux J, Barnier JP, Bille E, Ferroni A, Magny JF, Bôle-Feysot C, Charbit A, Nassif X, Brisse S, , High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones., J Clin Microbiol 2021 Feb; 59(3): .
2021
Schorn MA, Verhoeven S, Ridder L, Huber F, ....Boullié A, .... Gugger M,..... et al., A community resource for paired genomic and metabolomic data mining, Nat Chem Biol 2021 Feb; 15.
2021
Pierre Garneret,Etienne Coz, Elian Martin, Jean-Claude Manuguerra, Elodie Brient-Litzler, Vincent Enouf, Daniel Felipe González Obando, Jean-Christophe Olivo-Marin, Fabrice Monti, Sylvie van der Werf, Jessica Vanhomwegen, Patrick Tabeling, Performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification, PLOS ONE, 16(1), e0243712 - January 2021.
2021
Görgen S, Benzerara K, Skouri‑Panet F, Gugger M, Chauvat F, Cassier‑Chauvat C, The diversity of molecular mechanisms of carbonate biomineralization by bacteria, (2021) 1:2.
2020
Kämpfer P, Irgang R, Glaeser SP, Busse HJ, Criscuolo A, Clermont D, Avendaño-Herrera R, , Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae., Int J Syst Evol Microbiol 2020 Dec; 70(12): 6147-6154.
2020
Mühle E, Abry C, Leclerc P, Goly GM, Criscuolo A, Busse HJ, Kämpfer P, Bernardet JF, Clermont D, Chesneau O, , Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s., Int J Syst Evol Microbiol 2020 Nov; (): .
2020
Criscuolo A, On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference, F1000Res. 2020; 9:1309.
2020
Ramezani M, Pourmohyadini M, Nikou MM, Makzum S, Schumann P, Clermont D, Criscuolo A, Amoozegar MA, Kämpfer P, Spröer C, , Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland., Int J Syst Evol Microbiol 2020 Oct; (): .
2020
Kämpfer P, Glaeser SP, McInroy JA, Xu J, Busse HJ, Clermont D, Criscuolo A, , Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum., Int J Syst Evol Microbiol 2020 Oct; (): .
2020
Menu E, Criscuolo A, Desnos-Ollivier M, Cassagne C, D'Incan E, Furst S, Ranque S, Berger P, Dromer F, , Saprochaete clavata Outbreak Infecting Cancer Center through Dishwasher., Emerg Infect Dis 2020 Sep; 26(9): 2031-2038.
2020
Nguyen TQN, Tooh YW, Sugiyama R, Nguyen TPD, Purushothaman M, Leow LC, Hanif K, Yong RHS, Agatha I, Winnerdy FR, Gugger M, Phan AT, Morinaka BI, , Post-translational formation of strained cyclophanes in bacteria, Nat Chem 2020 Nov;12(11):1042-1053.
2020
Bösch N, Mariana B, Greczmiel U, Morinaka B, Gugger M, Oxenius A, Vagstad AL, Piel J, Landornamides, antiviral ornithine-containing ribosomal peptides discovered by proteusin mining, Angew. Chem. Int. Ed. Engl. 2020 Jul 13;59(29):11763-11768.
2020
Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar F, van der Werf S, Enouf V, Simon-Loriere E, , Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020., Euro Surveill. 2020 07; 25(26): .
2020
Esterre P, Ait-Saadi A, Arowas L, Chaouche S, Corre-Catelin N, Fanaud C, Laude H, Mellon V, Monceaux, V, Morizot G, Najjar I, Ottone C, Perlaza BL, Rimbault B, Sangari L, Ungeheuer, M-N, The ICAReB Platform: A Human Biobank for the Institut Pasteur and Beyond, Open Journal of Bioresources. 2020; 7: 1.
2020
Guglielmini J, Woo AC, Krupovic M, Forterre P, Gaia M, Reply to Ku and Sun: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes, Proc. Natl. Acad. Sci. U.S.A. 2020 Feb;117(6):2749-2750.
2020
Bauersachs T, Gugger M, Schwark L, Heterocyte glycolipid diketones: A novel type of biomarker in theN2-fixing heterocytous cyanobacterium Microchaetesp, Organic Geochemistry Vol 141, March 2020, 103976.
2020
Melo N, Wolff GH, Costa-da-Silva AL, Arribas R, Fernandez Triana M, Gugger M, Riffell JA, DeGennaro M, Stensmyr MC, Geosmin Attracts Aedes aegypti Mosquitoes to Oviposition Sites, Curr Biol. 2020 Jan 6;30(1):127-134.e5.
2020
Brito Â, Vieira J, Vieira CP, Zhu T, Leão PN, Ramos V, Lu X, Vasconcelos VM, Gugger M, Tamagnini P, Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium Hyella patelloides, Front Microbiol 2020 ; 11(): 1527.
2019
Li M, Calteau A, Semchonok DA, Witt TA, Nguyen JT, Sassoon N, Boekema EJ, Whitelegge J, Gugger M, Bruce BD, Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria, Nat Plants 2019 Dec;5(12):1309-1319.
2019
Mattila A, Andsten RM, Jumppanen M, Assante M, Jokela J, Wahlsten M, Mikula KM, Sigindere C, Kwak DH, Gugger M, Koskela H, Sivonen K, Liu X, Yli-Kauhaluoma J, Iwai H, Fewer DP, Biosynthesis of the bis-prenylated alkaloids muscoride A and B, ACS Chem Biol. 2019 Dec 20;14(12):2683-2690.
2019
Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170]., Res Microbiol ; 170(6-7): 300.
2019
Kim Tiam S, Comte K, Dalle C, Duval C, Pancrace C, Gugger M, Marie B, Yéprémian C, Bernard C, Development of a new extraction method based on high-intensity ultra-sonication to study RNA regulation of the filamentous cyanobacteria Planktothrix, PLoS ONE 2019;14(9):e0222029.
2019
Kim Tiam S, Gugger M, Demay J, Le Manach S, Duval C, Bernard C, Marie B, Insights into the Diversity of Secondary Metabolites of Using a Biphasic Approach Combining Global Genomics and Metabolomics, Toxins (Basel). 2019 Aug 27;11(9). pii: E498.
2019
Chapeton-Montes D, Plourde L, Bouchier C, Ma L, Diancourt L, Criscuolo A, Popoff MR, Brüggemann H, The population structure of Clostridium tetani deduced from its pan-genome, Sci Rep 2019 Aug;9(1):11220.
2019
Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, , The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
2019
De Wever A, Benzerara K, Coutaud M, Caumes G, Poinsot M, Skouri-Panet F, Laurent T, Duprat E, Gugger M, Evidence of high Ca uptake by cyanobacteria forming intracellular CaCO and impact on their growth, Geobiology. 2019 Nov;17(6):676-690.
2019
Helfrich EJN, Ueoka R, Dolev A, Rust M, Meoded RA, Bhushan A, Califano G, Costa R, Gugger M, Steinbeck C, Moreno P, Piel J, Automated structure prediction of trans-acyltransferase polyketide synthase products, Nat. Chem. Biol. 2019 July 15, 813-821.
2019
Bauersachs T, Miller SR, Gugger M, Mudimu O, Friedl T, Schwark L, Heterocyte glycolipids indicate polyphyly of stigonematalean cyanobacteria, Phytochemistry 2019 Jul;166:112059.
2019
Kämpfer P, Busse HJ, McInroy JA, Criscuolo A, Clermont D, Glaeser SP, , Xinfangfangia humi sp. nov., isolated from soil amended with humic acid., Int J Syst Evol Microbiol 2019 Jul; 69(7): 2070-2075.
2019
Kämpfer P, Busse HJ, Galatis H, Criscuolo A, Clermont D, Bizet C, Glaeser SP, , Paracoccus haematequi sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2019 Jun; 69(6): 1682-1688.
2019
Kämpfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP, , Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis., Int J Syst Evol Microbiol 2019 May; 69(5): 1438-1442.
2019
Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S, Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis, J. Clin. Microbiol. 2019 May;57(5).
2019
Kämpfer P, Busse HJ, Criscuolo A, Bizet C, Clermont D, McInroy JA, Glaeser SP, Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid, Int. J. Syst. Evol. Microbiol. 2019 Apr;.
2019
Dilsizoglu Senol A, Pepe A, Grudina C, Sassoon N, Reiko U, Bousset L, Melki R, Piel J, Gugger M, Zurzolo C, Effect of tolytoxin on tunneling nanotube formation and function, Sci Rep 2019 Apr;9(1):5741.
2019
Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M, , Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance., PLoS Negl Trop Dis 2019 04; 13(4): e0007374.
2019
Aujoulat F, Popoff MR, Diancourt L, Criscuolo A, Jean-Pierre H, Jumas-Bilak E, Marchandin H, Whole-Genome Sequences of a Cluster of 14 Unidentified Related sp. Strains from Human Clinical Samples and Type Strains of 3 Validated Species, Microbiol Resour Announc 2019 Mar;8(12).
2019
Diancourt L, Sautereau J, Criscuolo A, Popoff MR, Two Clostridium perfringens Type E Isolates in France, Toxins 2019 Mar;11(3):E138.
2019
Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov., Res Microbiol ; 170(3): 165-170.
2019
Nadimpalli M, Vuthy Y, de Lauzanne A, Fabre L, Criscuolo A, Gouali M, Huynh BT, Naas T, Phe T, Borand L, Jacobs J, Kerléguer A, Piola P, Guillemot D, Le Hello S, Delarocque-Astagneau E, Meat and Fish as Sources of Extended-Spectrum β-Lactamase-Producing Escherichia coli, Cambodia., Emerg Infect Dis 2019 Jan; 25(1): 126-31.
2018
Gugger M., Cyanobactéries, de l’oxygénation terrestre au substances naturelles, In Microbiodiversité, un nouveau regard, Laurent Palka Ed., Ch 10, pp. 255-274. Éditions Matériologiques.
2018
Pancrace C, Ishida K, Briand E, Gatte Pichi D, Weiz AR, Guljamow A, Scalvenzi T, Sassoon N, Hertweck C, Dittmann E, Gugger M, A Unique Biosynthetic Pathway in Bloom-Forming Cyanobacterial Genus Microcystis Jointly Assembles Cytotoxic Aeruginoguanidines and Microguanidines, ACS Chem. Biol. 2019 Feb;4(1):67–75.
2018
Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S, Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov, Int. J. Syst. Evol. Microbiol. 2018 Dec;68(12):3826-3831.
2018
Moosmann P, Ueoka R, Gugger M, Piel J, Aranazoles: Extensively Chlorinated Nonribosomal Peptide-Polyketide Hybrids from the Cyanobacterium Fischerella sp. PCC 9339, Org. Lett. 2018 09;20(17):5238-5241.
2018
Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S, Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough, Emerging Infect. Dis. 2018 Jun;24(6):988-994.
2018
Zhu T, Scalvenzi T, Sassoon N, Lu X, Gugger M, Terminal olefin profiles and phylogenetic analyses of olefin synthases in diversified cyanobacterial species, Appl. Environ. Microbiol. 2018 Jun;84(13):e00425-18.
2018
Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A, , Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing., mBio 2018 04; 9(2): .
2018
Criscuolo A, Chesneau O, Clermont D, Bizet C, , Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)., Genome Announc 2018 Apr; 6(14): .
2018
Morinaka BI, Lakis E, Verest M, Helf MJ, Scalvenzi T, Vagstad AL, Sims J, Sunagawa S, Gugger M, Piel J, Natural noncanonical protein splicing yields products with diverse β-amino acid residues, Science 2018 02;359(6377):779-782.
2018
Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR, , Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov., Antonie Van Leeuwenhoek 2018 Jan; 111(1): 55-72.
2017
Christo-Foroux E, Vallaeys T, Loux V, Dassa E, Deutscher J, Wandersman C, Livernois A, Hot C, Criscuolo A, Dauga C, Clermont D, Chesneau O, , Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group., Syst Appl Microbiol 2017 Oct; 40(7): 401-410.
2017
Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M, , Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France., Emerg Infect Dis 2017 Sep; 23(9): 1462-1470.
2017
Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D, , Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter., Int J Syst Evol Microbiol 2017 Sep; 67(9): 3192-3197.
2017
Haande S, Jasser I, Gugger M, Hagman CHC, Wilmotte A, Ballot A., Isolation, Purification, and Cultivation of Toxigenic Cyanobacteria, 2017 Aug, chapter 3, pages 43-78. Wiley..
2017
Pancrace C, Jokela J, Sassoon N, Ganneau C, Desnos-Ollivier M, Wahlsten M, Humisto A, Calteau A, Bay S, Fewer DP, Sivonen K, Gugger M, Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927, ACS Chem Biol 2017 Jul; 12(7): 1796-1804.
2017
Gugger M, Ledreux A, Toxines produites par les microalgues et cyanobactéries, In Risques microbiologiques alimentaires, Coll. Sciences et techniques agroalimentaires, Ch.32, pp 767-786.
2017
Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S, , Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain., Nat Commun 2017 05; 8(): 15483.
2017
Yazouli LE, Criscuolo A, Hejaji H, Bouaaza M, Elmdaghri N, Alami AA, Amraoui A, Dakka N, Radouani F, Molecular characterization of Chlamydia pneumoniae associated to atherosclerosis, Pathog Dis 2017 Apr;.
2017
Moosmann P, Ueoka R, Grauso L, Mangoni A, Morinaka BI, Gugger M, Piel J, Cyanobacterial ent-Sterol-Like Natural Products from a Deviated Ubiquinone Pathway, Angew Chem Int Ed Engl. 2017 Apr;56(18):4987-4990.
2017
Pancrace C, Barny MA, Ueoka R, Calteau A, Scalvenzi T, Pédron J, Barbe V, Piel J, Humbert JF, Gugger M, Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains, Sci Rep 2017 Jan;7:41181.
2017
Pancrace C., Gugger M., Calteau A., Genomics of NRPS/PKS Biosynthetic Gene Clusters in Cyanobacteria, Cyanobacteria: Omics and Manipulation | Book edited Los Dimitri 2017 Jan;55-74.
2017
Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S, , Citrobacter europaeus sp. nov., isolated from water and human faecal samples., Int J Syst Evol Microbiol 2017 Jan; 67(1): 170-173.
2016
Morinaka BI, Verest M, Freeman MF, Gugger M, Piel J, An Orthogonal D2 O-Based Induction System that Provides Insights into d-Amino Acid Pattern Formation by Radical S-Adenosylmethionine Peptide Epimerases, Angew. Chem. Int. Ed. Engl. 2017 Jan;56(3):762-766.
2016
Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S, , Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes., Nat Microbiol 2016 Oct; 2(): 16185.
2016
Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
2016
Antunes LC, Poppleton D, Klingl A, Criscuolo A, Dupuy B, Brochier-Armanet C, Beloin C, Gribaldo S, Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes., Elife 2016 Aug; 5(): .
2016
Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A, , Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom., Genome Announc 2016 Aug; 4(4): .
2016
Breurec S, Criscuolo A, Diancourt L, Rendueles O, Vandenbogaert M, Passet V, Caro V, Rocha EP, Touchon M, Brisse S, Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
2016
Gonzalez-Esquer CR, Smarda J, Rippka R, Axen SD, Guglielmi G, Gugger M, Kerfeld CA, Cyanobacterial ultrastructure in light of genomic sequence data, Photosyn. Res. 2016 Aug;129(2):147-57.
2016
Briand E, Bormans M, Gugger M, Dorrestein PC, Gerwick WH, Changes in secondary metabolic profiles of Microcystis aeruginosa strains in response to intraspecific interactions, Environ. Microbiol. 2016 Feb;18(2):384-400.
2016
Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, , Global phylogeography and evolutionary history of Shigella dysenteriae type 1., Nat Microbiol 2016 03; 1(): 16027.
2016
Beal J, Haddock-Angelli T, Gershater M, de Mora K, Lizarazo M, Hollenhorst J, Rettberg R,, Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli, PLoS ONE 2016;11(3):e0150182.
2016
Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A, Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows, J Genomics 2016;4:7-9.
2015
Dominique Clermont, Maite Gomard, Sylviane Hamon, Isabelle Bonne, José-Carlos Fernandez, Richard Wheeler, Christian Malosse, Julia Chamot-Rooke, Simonetta Gribaldo, Ivo Gomperts Boneca, Chantal Bizet, Paenibacillus faecis sp. nov., isolated from human faeces, International Journal of Systematic and Evolutionary Microbiology, 2015, 65 (12), pp.4621-4626. ⟨10.1099/ijsem.0.000622⟩.
2015
Dittmann E, Gugger M, Sivonen K, Fewer DP, Natural Product Biosynthetic Diversity and Comparative Genomics of the Cyanobacteria, Trends Microbiol. 2015 Oct;23(10):642-52.
2015
Stielow JB, Lévesque CA, Seifert KA, Meyer W, Iriny L, Smits D, Renfurm R, Verkley GJ, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AM, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LA, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, de Beer ZW, Barnes I, Duong TA, Wingfield MJ, de Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, de Vries M, Robert V, One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes, Persoonia 2015 Dec;35:242-63.
2015
Ueoka R, Uria AR, Reiter S, Mori T, Karbaum P, Peters EE, Helfrich EJ, Morinaka BI, Gugger M, Takeyama H, Matsunaga S, Piel J, Metabolic and evolutionary origin of actin-binding polyketides from diverse organisms, Nat. Chem. Biol. 2015 Sep;11(9):705-12.
2015
Schirrmeister BE, Gugger M, Donoghue PC, Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils, Palaeontology 2015 Sep;58(5):769-785.
2015
Clermont D, Motreff L, Passet V, Fernandez JC, Bizet C, Brisse S, , Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov., Int J Syst Evol Microbiol 2015 May; 65(Pt 5): 1486-1490.
2015
Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Bégaud E, Bizet C, Pascual J, Ruvira MA, Macián MC, Arahal DR, Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections, Appl. Microbiol. Biotechnol. 2015 Apr;99(8):3559-71.
2015
Echenique-Subiabre I, Villeneuve A, Golubic S, Turquet J, Humbert JF, Gugger M, Influence of local and global environmental parameters on the composition of cyanobacterial mats in a tropical lagoon, Microb. Ecol. 2015 Feb;69(2):234-44.
2015
Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, Holden MT, Poyart C, Glaser P, Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline, Nat Commun 2015 Jan;6:6108.
2014
Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M, Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria, BMC Genomics 2014;15:977.
2014
Clément B, Yuille M, Zaltoukal K, Wichmann HE, Anton G, Parodi B, Kozera L, Bréchot C, Hofman P, Dagher G,, Public biobanks: calculation and recovery of costs, Sci Transl Med 2014 Nov;6(261):261fs45.
2014
Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP, , The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences., Genome Biol Evol 2014 Oct; 6(10): 2866-82.
2014
Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, , Holden MTG, Poyart C, Glaser P, , Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline., Nat Commun 2014 Aug; 5(): 4544.
2014
Benzerara K, Skouri-Panet F, Li J, Férard C, Gugger M, Laurent T, Couradeau E, Ragon M, Cosmidis J, Menguy N, Margaret-Oliver I, Tavera R, López-García P, Moreira D, Intracellular Ca-carbonate biomineralization is widespread in cyanobacteria, Proc. Natl. Acad. Sci. U.S.A. 2014 Jul;111(30):10933-8.
2014
Morinaka BI, Vagstad AL, Helf MJ, Gugger M, Kegler C, Freeman MF, Bode HB, Piel J, Radical S-adenosyl methionine epimerases: regioselective introduction of diverse D-amino acid patterns into peptide natural products, Angew. Chem. Int. Ed. Engl. 2014 Aug;53(32):8503-7.
2014
Clermont D, Santoni S, Saker S, Gomard M, Gardais E, Bizet C, , Assessment of DNA encapsulation, a new room-temperature DNA storage method., Biopreserv Biobank 2014 Jun; 12(3): 176-83.
2014
Roué M, Gugger M, Golubic S, Amzil Z, Araoz R, Turquet J, Chinain M, Laurent D, Marine cyanotoxins potentially harmful to human health, Outstanding Marine Molecules: Chemistry, Biology, Analysis, eds La Barre S, Kornprobst JM (WILEY-Blackwell, Weinheim) chap. 01 pp. 3–22..
2013
Baran R, Ivanova NN, Jose N, Garcia-Pichel F, Kyrpides NC, Gugger M, Northen TR, Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics, Mar Drugs 2013 Oct;11(10):3617-31.
2013
Cousin S, Clermont D, Creno S, Ma L, Loux V, Bizet C, Bouchier C, , Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T., Genome Announc 2013 Aug; 1(4): .
2013
Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C, , Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine., Genome Announc 2013 Aug; 1(4): .
2013
Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C, , Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively., Genome Announc 2013 Aug; 1(4): .
2013
Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C, Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin, Genome Announc 2013 Aug;1(4).
2013
Humbert JF, Barbe V, Latifi A, Gugger M, Calteau A, Coursin T, Lajus A, Castelli V, Oztas S, Samson G, Longin C, Medigue C, de Marsac NT, A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa, PLoS ONE 2013;8(8):e70747.
2013
Leikoski N, Liu L, Jokela J, Wahlsten M, Gugger M, Calteau A, Permi P, Kerfeld CA, Sivonen K, Fewer DP, Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides, Chem. Biol. 2013 Aug;20(8):1033-43.
2013
Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew S, Moore ER, Gomila M, Nakagawa Y, Janssens D, De Vos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, R Arahal D, Spieck E, Pommerening Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby JP, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R, Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names, Syst. Appl. Microbiol. 2013 Feb;36(1):69-73.
2013
Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, Nolan M, Davenport KW, Han CS, Rubin EM, Eisen JA, Woyke T, Gugger M, Kerfeld CA, Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing, Proc. Natl. Acad. Sci. U.S.A. 2013 Jan;110(3):1053-8.
2013
Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Spröer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C, , Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov., Int J Syst Evol Microbiol 2013 Jan; 63(Pt 1): 53-59.
2013
Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Pühler A, Martin WF, Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids, Genome Biol Evol 2013;5(1):31-44.
2012
Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C, , Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop., J Bacteriol 2012 Nov; 194(21): 5973.
2012
Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, Poyart C, Rosinski-Chupin I, Glaser P, , The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome., Mol Microbiol 2012 Sep; 85(6): 1057-71.
2012
Villeneuve A, Laurent D, Chinain M, Gugger M, Humbert JF, Molecular characterization of the diversity and potential toxicity of cyanobacterial mats in two tropical lagoons in the South Pacific Ocean (1), J Phycol 2012 Apr; 48(2): 275-84.
2012
Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C, , Lactobacillus gigeriorum sp. nov., isolated from chicken crop., Int J Syst Evol Microbiol 2012 Feb; 62(Pt 2): 330-334.
2011
Rantala-Ylinen A, Känä S, Wang H, Rouhiainen L, Wahlsten M, Rizzi E, Berg K, Gugger M, Sivonen K, Anatoxin-a synthetase gene cluster of the cyanobacterium Anabaena sp. strain 37 and molecular methods to detect potential producers, Appl. Environ. Microbiol. 2011 Oct;77(20):7271-8.
2010
Leclercq A, Clermont D, Bizet C, Grimont PAD, Le Flèche-Matéos A, Roche SM, Buchrieser C, Cadet-Daniel V, Le Monnier A, Lecuit M, Allerberger F, Listeria rocourtiae sp. nov., Int J Syst Evol Microbiol 2010 Sep; 60(Pt 9): 2210-2214.
2010
Janssens D, Arahal DR, Bizet C, Garay E, The role of public biological resource centers in providing a basic infrastructure for microbial research, Res. Microbiol. 2010 Jul-Aug;161(6):422-9.
2010
Humbert JF, Quiblier C, Gugger M, Molecular approaches for monitoring potentially toxic marine and freshwater phytoplankton species, Anal Bioanal Chem 2010 Jul;397(5):1723-32.
2009
Ivanova EP, Christen R, Bizet C, Clermont D, Motreff L, Bouchier C, Zhukova NV, Crawford RJ, Kiprianova EA, , Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants., Int J Syst Evol Microbiol 2009 Oct; 59(Pt 10): 2476-81.
2009
Clermont D, Diard S, Bouchier C, Vivier C, Bimet F, Motreff L, Welker M, Kallow W, Bizet C, Microbacterium binotii sp. nov., isolated from human blood, Int. J. Syst. Evol. Microbiol. 2009 May;59(Pt 5):1016-22.
2008
Pukall R, Schumann P, Clermont D, Bizet C, Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis, Int. J. Syst. Evol. Microbiol. 2008 May;58(Pt 5):1268-70.
2008
Briand E, Gugger M, François JC, Bernard C, Humbert JF, Quiblier C, Temporal variations in the dynamics of potentially microcystin-producing strains in a bloom-forming Planktothrix agardhii (Cyanobacterium) population, Appl. Environ. Microbiol. 2008 Jun;74(12):3839-48.
2007
Papierok B, Bégaud E, Bizet C, The Biological Resource Centre of the Institut Pasteur: a dynamic tool for advanced research, Res. Microbiol. 2007 Oct-Nov;158(8-9):718-9.
2007
Yéprémian C, Gugger MF, Briand E, Catherine A, Berger C, Quiblier C, Bernard C, Microcystin ecotypes in a perennial Planktothrix agardhii bloom, Water Res. 2007 Nov;41(19):4446-56.
2006
Petrella S, Renard M, Ziental-Gelus N, Clermont D, Jarlier V, Sougakoff W, Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri, FEMS Microbiol. Lett. 2006 Jan;254(2):285-92.
2004
Feurer C, Clermont D, Bimet F, Candréa A, Jackson M, Glaser P, Bizet C, Dauga C, , Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov., Int J Syst Evol Microbiol 2004 Jul; 54(Pt 4): 1055-1061.
2003
Parthuisot N, Catala P, Lebaron P, Clermont D, Bizet C, A sensitive and rapid method to determine the viability of freeze-dried bacterial cells, Lett. Appl. Microbiol. 2003;36(6):412-7.
2001
Clermont D, Harmant C, Bizet C, Identification of strains of Alcaligenes and Agrobacterium by a polyphasic approach, J. Clin. Microbiol. 2001 Sep;39(9):3104-9.