• 2025
  Leroux P, Bouchez V, Rodrigues C, Cohen JF, Brisse S, Toubiana J, ‘Association between pertactin-producing Bordetella pertussis and fulminant pertussis in infants’-author’s response., Clin Microbiol Infect 2025 Oct; 31(10): 1748-1749.
• 2025
  Bouchez V, Lefrancq N, Toubiana J, Rodrigues C, Brisse S, Microbes know no borders: importation of macrolide-resistant Bordetella pertussis into France in 2024., Clin Microbiol Infect 2025 Oct; 31(10): 1737-1739.
• 2025
  Jacquemin A, Palma F, Duque M, Jousset AB, Brisse S, Dortet L, Naas T, Bonnin RA, A novel multilocus sequence typing scheme for Morganella spp.: population structure and introduction of quantitative metric for standardization of MLST scheme., J Antimicrob Chemother 2025 Sep; 80(9): 2391-2398.
• 2025
  Bouchez V, Lefrancq N, Toubiana J, Rodrigues C, Brisse S, Microbes know no borders: importation of macrolide-resistant Bordetella pertussis into France in 2024: author’s reply., Clin Microbiol Infect 2025 Aug; (): .
• 2025
  Adeline Pastuszka, Maria-Vittoria Mazzuoli, Chiara Crestani, Léonie Deborde, Odile Sismeiro, Coralie Lemaire, Vanessa Rong, Myriam Gominet, Elise Jacquemet, Rachel Legendre, Philippe Lanotte, Arnaud Firon, The virulence regulator CovR boosts CRISPR-Cas9 immunity in Group B Streptococcus, Nature Communications, 2025, 16 (1), pp.5678. ⟨10.1038/s41467-025-60871-6⟩.
• 2025
  McAndrew G, Barbier E, Rodrigues C, Piveteau P, Brisse S, Reddington K, KpSC-ID: a multiplex real-time PCR assay for the simultaneous detection of the Klebsiella pneumoniae species complex and specific identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae and Klebsiella variicola., Microbiology (Reading) 2025 Jul; 171(7): .
• 2025
  Hoefer A, Seth-Smith H, Palma F, Schindler S, Freschi L, Dangel A, Berger A, D'Aeth J, Cordery R, Delgado-Rodriguez E, Gruner E, Flury D, Hinic V, Kofler J, Lienhard R, Mariman R, Nolte O, Schibli A, Toubiana J, Traugott M, Jacquinet S, Indra A, Fry NK, Palm D, Sing A, Brisse S, Egli A, Corynebacterium diphtheriae Outbreak in Migrant Populations in Europe., N Engl J Med 2025 Jun; (): .
• 2025
  Nora Zidane, Carla Rodrigues, Valerie Bouchez, Martin Rethoret-Pasty, Virginie Passet, Sylvain Brisse, Chiara Crestani, Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing, Genome Research, In press, pp.gr.279829.124. ⟨10.1101/gr.279829.124⟩.
• 2025
  Chiara Crestani, Virginie Passet, Martin Rethoret-Pasty, Nora Zidane, Sylvie Brémont, Edgar Badell, Alexis Criscuolo, Sylvain Brisse, Microevolution and genomic epidemiology of the diphtheria-causing zoonotic pathogen Corynebacterium ulcerans, Nature Communications, 2025, 16 (1), pp.4843. ⟨10.1038/s41467-025-60065-0⟩.
• 2025
  Hetland MAK, Winkler MA, Kaspersen H, Håkonsholm F, Bakksjø R-J, Bernhoff E, Delgado-Blas JF, Brisse S, Correia A, Fostervold A, Lam MMC, Lunestad B-T, Marathe NP, Raffelsberger N, Samuelsen Ø, Sunde M, Sundsfjord A, Urdahl AM, Wick RR, Holt KE, Löhr IH, Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals, and marine sources in Norway from 2001 to 2020., Microbiol Resour Announc 2025 May; (): e0093124.
• 2025
  Hetland MAK, Winkler MA, Kaspersen HP, Håkonsholm F, Bakksjø RJ, Bernhoff E, Delgado-Blas JF, Brisse S, Correia A, Fostervold A, Lam MMC, Lunestad BT, Marathe NP, Raffelsberger N, Samuelsen Ø, Sunde M, Sundsfjord A, Urdahl AM, Wick RR, Löhr IH, Holt KE, A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events across reservoirs., Genome Med 2025 Apr; 17(1): 42.
• 2025
  Lam MMC, Salisbury SM, Treat LP, Wick RR, Judd LM, Wyres KL, Brisse S, Walker KA, Miller VL, Holt KE, Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae., Genome Med 2025 Apr; 17(1): 36.
• 2025
  Monchausse T, Launay T, Rossignol L, Ait El Belghiti F, Brisse S, Guiso N, Merdrignac L, Rodrigues C, Parent du Châtelet I, Renard A, Toubiana J, Hanslik T, Blanchon T, Steichen O, Debin M, Clinical characteristics of cases during the 2024 pertussis epidemic in France, January 2024 to December 2024., Vaccine 2025 Feb; 51(): 126862.
• 2025
  Lowe CF, Ritchie G, Crestani C, Imperial M, Matic N, Payne M, Stefanovic A, Whellams D, Brisse S, Romney MG, Diphtheria Toxin-Producing Corynebacterium ramonii in Inner-City Population, Vancouver, British Columbia, Canada, 2019-2023., Emerg Infect Dis 2025 Feb; 31(2): 323-327.
• 2025
  Lefrancq N, Duret L, Bouchez V, Brisse S, Parkhill J, Salje H, Learning the fitness dynamics of pathogens from phylogenies., Nature 2025 Jan; (): .
• 2025
  Grandière Pérez L, Brisse S, Diphtheria antitoxin treatment: from pioneer to neglected., Mem Inst Oswaldo Cruz 2025 ; 120(): e240214.
• 2025
  Khazaz A, El Otmani F, Benzaarate I, El Hamouchi A, Bourjilat F, Brisse S, Nayme K, First detection of the high-risk Klebsiella pneumoniae ST147 clone producing NDM-14 in a community setting in Morocco: A new public health concern., J Glob Antimicrob Resist 2025 Jan; 40(): 96-97.
• 2024
  Biedrzycka M, Urbanowicz P, Brisse S, Palma F, Żabicka D, Gniadkowski M, Izdebski R, Multiple regional outbreaks caused by global and local VIM-producing Klebsiella pneumoniae clones in Poland, 2006-2019., Eur J Clin Microbiol Infect Dis 2024 Dec; (): .
• 2024
  Gauthier Delvallez, Laure Diancourt, Julien Guglielmini, Anne-Laure Michon, Sylvain Brisse, B. Dupuy, Alexis Criscuolo, Comment on: Co-occurrence of the cephalosporinase cepA and carbapenemase cfiA genes in a Bacteroides fragilis Division II strain: an unexpected finding, Journal of Antimicrobial Chemotherapy, 6:dkae427. ⟨10.1093/jac/dkae427⟩.
• 2024
  Chêne L, Morand JJ, Badell E, Toubiana J, Janvier F, Marthinet H, Suppini JP, Valois A, Texier G, Brisse S, Dutasta F, Cutaneous diphtheria from 2018 to 2022: an observational, retrospective study of epidemiological, microbiological, clinical, and therapeutic characteristics in metropolitan France., Emerg Microbes Infect 2024 Dec; 13(1): 2408324.
• 2024
  Chong CE, Pham TM, Carey ME, Wee BA, Taouk ML, Favieres JF, Moore CE, Dyson ZA, Lim C, Brown CL, Williamson D, Opatowski L, Outterson K, Mukiri KM, Sherry NL, Essack SY, Brisse S, Grad YH, Baker KS, Conference report of the 2024 Antimicrobial Resistance Meeting., NPJ Antimicrob Resist 2024 Nov; 2(1): 43.
• 2024
  Ligowska-Marzęta M, Barbier E, Rodrigues C, Piveteau P, Schrøder Hansen D, Hartmann A, Møller Nielsen E, Brisse S, Triplex real-time PCR ZKIR-T assay for simultaneous detection of the Klebsiella pneumoniae species complex and identification of K. pneumoniae sensu stricto., Microbiol Spectr 2024 Oct; (): e0033624.
• 2024
  Tsang KK, Lam MMC, Wick RR, Wyres KL, Bachman M, Baker S, Barry K, Brisse S, Campino S, Chiaverini A, Cirillo DM, Clark T, Corander J, Corbella M, Cornacchia A, Cuénod A, D'Alterio N, Di Marco F, Donado-Godoy P, Egli A, Farzana R, Feil EJ, Fostervold A, Gorrie CL, Hassan B, Hetland MAK, Hoa LNM, Hoi LT, Howden B, Ikhimiukor OO, Jenney AWJ, Kaspersen H, Khokhar F, Leangapichart T, Ligowska-Marzęta M, Löhr IH, Long SW, Mathers AJ, McArthur AG, Nagaraj G, Oaikhena AO, Okeke IN, Perdigão J, Parikh H, Pham MH, Pomilio F, Raffelsberger N, Rakotondrasoa A, Kumar KLR, Roberts LW, Rodrigues C, Samuelsen Ø, Sands K, Sassera D, Seth-Smith H, Shamanna V, Sherry NL, Sia S, Spadar A, Stoesser N, Sunde M, Sundsfjord A, Thach PN, Thomson NR, Thorpe HA, Torok ME, Trang VD, Trung NV, Vornhagen J, Walsh T, Warne B, Wilson H, Wright GD, Holt KE, KlebNET-Gsp Amr Genotype-Phenotype Group, Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae., Microb Genom 2024 Oct; 10(10): .
• 2024
  Leroux P, Matczak S, Bouchez V, Volant S, Ouziel A, Launay E, Faye A, Rabier V, Sarlangue J, Jeziorski E, Maakaroun-Vermesse Z, Madhi F, Pinquier D, Lorrot M, Pouletty M, Cantais A, Javouhey E, Aït Belghiti F, Guillot S, Rodrigues C, Brisse S, Cohen JF, Toubiana J, Association between pertactin-producing Bordetella pertussis and fulminant pertussis in infants: a multicenter study in France, 2008-2019., Clin Microbiol Infect 2024 Sep; (): .
• 2024
  Jauvain M, Carrer M, Palma F, Chapuzet C, Courat N, Heslan C, Pereyre S, Cazanave C, Brisse S, Bacteraemia associated with multiple septic localizations caused by Klebsiella pneumoniae sequence type ST660., Eur J Clin Microbiol Infect Dis 2024 Aug; 43(8): 1655-1659.
• 2024
  Gaillet M, Hennart M, Rose VS, Badell E, Michaud C, Blaizot R, Demar M, Carvalho L, Carod JF, Andrieu A, Djossou F, Toubiana J, Epelboin L, Brisse S, Retrospective Study of Infections with Corynebacterium diphtheriae Species Complex, French Guiana, 2016-2021., Emerg Infect Dis 2024 Aug; 30(8): 1545-1554.
• 2024
  Rodrigues C, Bouchez V, Soares A, Trombert-Paolantoni S, Aït El Belghiti F, Cohen JF, Armatys N, Landier A, Blanchot T, Hervo M, , Toubiana J, Brisse S, Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024., Euro Surveill 2024 Aug; 29(31): .
• 2024
  Bouchez V, Toubiana J, Guillot S, Parapertussis Study Group , El Belghiti FA, Landier A, Armatys N, Trombert-Paolantoni S, Soares A, Rodrigues C, Brisse S, Transient reemergence of Bordetella parapertussis in France in 2022., J Med Microbiol 2024 Jul; 73(7): .
• 2024
  El Ghalid M, Chiarelli A, Brisse S, Betsou F, Garcia-Hermoso D, Stability and Qualification of a Legacy Fungal Collection., Biopreserv Biobank 2024 Apr; (): .
• 2024
  Vialetto E, Miele S, Goren MG, Yu J, Yu Y, Collias D, Beamud B, Osbelt L, Lourenço M, Strowig T, Brisse S, Barquist L, Qimron U, Bikard D, Beisel CL, Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity., Nucleic Acids Res 2024 Jun; 52(10): 6079-6091.
• 2024
  Van Goethem T, Kerambrun H, Boue Y, Chamouine A, Brisse S, Toubiana J, Franco J, Intravenous Immunoglobulin in Diphtheritic Polyneuropathy., Pediatr Infect Dis J 2024 Apr; (): .
• 2024
  Anja Berger, E Badell, Jenny Åhman, Erika Matuschek, Nora Zidane, Gunnar Kahlmeter, Andreas Sing, Sylvain Brisse, Corynebacterium diphtheriae and Corynebacterium ulcerans : development of EUCAST methods and generation of data on which to determine breakpoints, Journal of Antimicrobial Chemotherapy, 2024, pp.dkae056. ⟨10.1093/jac/dkae056⟩.
• 2024
  Örmälä-Tiznado A-M, Allander L, Maatallah M, Kabir MH, Brisse S, Sandegren L, Patpatia S, Coorens M, Giske CG, Molecular characteristics, fitness, and virulence of high-risk and non-high-risk clones of carbapenemase-producing Klebsiella pneumoniae., Microbiol Spectr 2024 Feb; 12(2): e0403622.
• 2024
  Cooper HB, Vezina B, Hawkey J, Passet V, López-Fernández S, Monk JM, Brisse S, Holt KE, Wyres KL, A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex., Microb Genom 2024 Feb; 10(2): .
• 2024
  Mutschler E, Roloff T, Neves A, Vangstein Aamot H, Rodriguez-Sanchez B, Ramirez M, Rossen J, Couto N, Novais Â, Howden BP, Brisse S, Reuter S, Nolte O, Egli A, Seth-Smith HMB, Towards unified reporting of genome sequencing results in clinical microbiology., PeerJ 2024 ; 12(): e17673.
• 2023
  Brémont S, Passet V, Hennart M, Fonteneau L, Toubiana J, Badell E, Brisse S, Multidrug-resistant Corynebacterium diphtheriae in people with travel history from West Africa to France, March to September 2023., Euro Surveill 2023 Nov; 28(46): .
• 2023
  Nadimpalli ML, Stegger M, Viau R, Yith V, de Lauzanne A, Sem N, Borand L, Huynh BT, Brisse S, Passet V, Overballe-Petersen S, Aziz M, Gouali M, Jacobs J, Phe T, Hungate BA, Leshyk VO, Pickering AJ, Gravey F, Liu CM, Johnson TJ, Hello SL, Price LB, Plugging the leaks: antibiotic resistance at human-animal interfaces in low-resource settings., Front Ecol Environ 2023 Nov; 21(9): 428-434.
• 2023
  Melanie Hennart, Chiara Crestani, Sebastien Bridel, Nathalie Armatys, Sylvie Brémont, Annick Carmi-Leroy, Annie Landier, Virginie Passet, Laure Fonteneau, Sophie Vaux, Julie Toubiana, Edgar Badell, Sylvain Brisse, A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence, Peer Community Journal, 2023, 3, pp.e76. ⟨10.24072/pcjournal.307⟩.
• 2023
  Crestani C, Arcari G, Landier A, Passet V, Garnier D, Brémont S, Armatys N, Carmi-Leroy A, Toubiana J, Badell E, Brisse S, Corynebacterium ramonii sp. nov., a novel toxigenic member of the Corynebacterium diphtheriae species complex., Res Microbiol 2023 Aug; (): 104113.
• 2023
  Garrigos T, Grimal A, Badell E, Traversier N, Picot S, Lignereux A, Ramiandrisoa M, Ben Cimon C, Jaffar-Bandjee MC, Gbaguidi-Haore H, Toubiana J, Brisse S, Miltgen G, Belmonte O, Emerging Corynebacterium diphtheriae Species Complex Infections, Réunion Island, France, 2015-2020., Emerg Infect Dis 2023 Aug; 29(8): 1630-1633.
• 2023
  Crippa C, Pasquali F, Rodrigues C, De Cesare A, Lucchi A, Gambi L, Manfreda G, Brisse S, Palma F, Genomic features of Klebsiella isolates from artisanal ready-to-eat food production facilities., Sci Rep 2023 Jul; 13(1): 10957.
• 2023
  Lourenço M, Osbelt L, Passet V, Gravey F, Megrian D, Strowig T, Rodrigues C, Brisse S, Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance., Microbiol Spectr 2023 Jun; (): e0481222.
• 2023
  Soraya Matczak, Valérie Bouchez, Pauline Leroux, Thibaut Douché, Nils Collinet, Annie Landier, Quentin Giai Gianetto, Sophie Guillot, Julia Chamot-Rooke, Milena Hasan, Mariette Matondo, Sylvain Brisse, Julie Toubiana, Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype, Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩.
• 2023
  Tessier E, Hennart M, Badell E, Passet V, Toubiana J, Biron A, Gourinat AC, Merlet A, Colot J, Brisse S, Genomic Epidemiology of Corynebacterium diphtheriae in New Caledonia., Microbiol Spectr 2023 Apr; (): e0461622.
• 2023
  Museux K, Arcari G, Rodrigo G, Hennart M, Badell E, Toubiana J, Brisse S, Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France., Microbiol Spectr 2023 Apr; (): e0000623.
• 2023
  Duval A, Opatowski L, Brisse S, , Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study., Lancet Microbe 2023 Mar; (): .
• 2023
  Foster-Nyarko E, Cottingham H, Wick RR, Judd LM, Lam MMC, Wyres KL, Stanton TD, Tsang KK, David S, Aanensen DM, Brisse S, Holt KE, Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae., Microb Genom 2023 Feb; 9(2): .
• 2023
  Arcari G, Hennart M, Badell E, Brisse S, Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands., Microb Genom 2023 Jan; 9(1): .
• 2022
  Thorpe HA, Booton R, Kallonen T, Gibbon MJ, Couto N, Passet V, López-Fernández S, Rodrigues C, Matthews L, Mitchell S, Reeve R, David S, Merla C, Corbella M, Ferrari C, Comandatore F, Marone P, Brisse S, Sassera D, Corander J, Feil EJ, , A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings., Nat Microbiol 2022 Dec; 7(12): 2054-2067.
• 2022
  Lamoureux C, Rézig S, Le Bars H, Le Divenah F, Tandé D, Vélo-Suarez L, Badell E, Brisse S, Héry-Arnaud G, Beauruelle C, , Corynebacterium ulcerans as filamentous branching rods., Clin Microbiol Infect 2022 Nov; (): .
• 2022
  Lindstedt K, Buczek D, Pedersen T, Hjerde E, Raffelsberger N, Suzuki Y, Brisse S, Holt K, Samuelsen Ø, Sundsfjord A, , Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods., Gut Microbes ; 14(1): 2118500.
• 2022
  Dereeper A, Gruel G, Pot M, Couvin D, Barbier E, Bastian S, Bambou JC, Gelu-Simeon M, Ferdinand S, Guyomard-Rabenirina S, Passet V, Martino F, Piveteau P, Reynaud Y, Rodrigues C, Roger PM, Roy X, Talarmin A, Tressieres B, Valette M, Brisse S, Breurec S, , Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)., Microbiol Spectr 2022 Sep; (): e0124222.
• 2022
  Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S, , A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies., Nat Commun 2022 Jul; 13(1): 3807.
• 2022
  Delvallez G, Badell E, Cheng S, Meng S, Tong V, Norman J, Toubiana J, Vandelannoote K, Bañuls AL, Hide M, Brisse S, , Non-toxigenic Corynebacterium diphtheriae in hallux ulceration., J Infect Dev Ctries 2022 Jun; 16(6): 1118-1121.
• 2022
  Hennart M, Guglielmini J, Bridel S, Maiden MCJ, Jolley KA, Criscuolo A, Brisse S, A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains, Mol Biol Evol. 2022 Jun; msac135.
• 2022
  Matczak S, Levy C, Fortas C, Cohen JF, Béchet S, Aït El Belghiti F, Guillot S, Trombert-Paolantoni S, Jacomo V, Savitch Y, Paireau J, Brisse S, Guiso N, Lévy-Bruhl D, Cohen R, Toubiana J, , Association between the COVID-19 pandemic and pertussis derived from multiple nationwide data sources, France, 2013 to 2020., Euro Surveill 2022 Jun; 27(25): .
• 2022
  Vezina B, Judd LM, McDougall FK, Boardman WSJ, Power ML, Hawkey J, Brisse S, Monk JM, Holt KE, Wyres KL, , Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies., Environ Microbiol 2022 May; (): .
• 2022
  Laforêt F, Antoine C, Blasdel Reuter B, Detilleux J, Pirnay JP, Brisse S, Fall A, Duprez JN, Delcenserie V, Thiry D, , In Vitro and In Vivo Assessments of Two Newly Isolated Bacteriophages against an ST13 Urinary Tract Infection Klebsiella pneumoniae., Viruses 2022 05; 14(5): .
• 2022
  Rakotondrasoa A, Andrianonimiadana LM, Rahajandraibe S, Razafimahatratra S, Andrianaivoarimanana V, Rahelinirina S, Crucitti T, Brisse S, Jeannoda V, Rajerison M, Collard JM, Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017., Sci Rep 2022 Apr; 12(1): 6871.
• 2022
  Lefrancq N, Bouchez V, Fernandes N, Barkoff AM, Bosch T, Dalby T, Åkerlund T, Darenberg J, Fabianova K, Vestrheim DF, Fry NK, González-López JJ, Gullsby K, Habington A, He Q, Litt D, Martini H, Piérard D, Stefanelli P, Stegger M, Zavadilova J, Armatys N, Landier A, Guillot S, Hong SL, Lemey P, Parkhill J, Toubiana J, Cauchemez S, Salje H, Brisse S, , Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis., Sci Transl Med 2022 Apr; 14(642): eabn3253.
• 2022
  Debin M, Launay T, Rossignol L, Ait El Belghiti F, Brisse S, Guillot S, Guiso N, Levy-Bruhl D, Merdrignac L, Toubiana J, Blanchon T, Hanslik T, , Pertussis surveillance results from a French general practitioner network, France, 2017 to 2020., Euro Surveill 2022 Apr; 27(17): .
• 2022
  Palma F, Mangone I, Janowicz A, Moura A, Chiaverini A, Torresi M, Garofolo G, Criscuolo A, Brisse S, Di Pasquale A, Cammà C, Radomski N, , In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes., BMC Genomics 2022 Mar; 23(1): 235.
• 2022
  Hawkey J, Vezina B, Monk JM, Judd LM, Harshegyi T, López-Fernández S, Rodrigues C, Brisse S, Holt KE, Wyres KL, , A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality., Genome Res 2022 Mar; (): .
• 2022
  Garcia-Fierro R, Drapeau A, Dazas M, Saras E, Rodrigues C, Brisse S, Madec JY, Haenni M, , Comparative phylogenomics of ESBL-, AmpC- and carbapenemase-producing Klebsiella pneumoniae originating from companion animals and humans., J Antimicrob Chemother 2022 Feb; (): .
• 2022
  Scholz AH, Freitag J, Lyal CHC, Sara R, Cepeda ML, Cancio I, Sett S, Hufton AL, Abebaw Y, Bansal K, Benbouza H, Boga HI, Brisse S, Bruford MW, Clissold H, Cochrane G, Coddington JA, Deletoille AC, García-Cardona F, Hamer M, Hurtado-Ortiz R, Miano DW, Nicholson D, Oliveira G, Bravo CO, Rohden F, Seberg O, Segelbacher G, Shouche Y, Sierra A, Karsch-Mizrachi I, da Silva J, Hautea DM, da Silva M, Suzuki M, Tesfaye K, Tiambo CK, Tolley KA, Varshney R, Zambrano MM, Overmann J, , Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation., Nat Commun 2022 02; 13(1): 1086.
• 2022
  Rodrigues C, Hauser K, Cahill N, Ligowska-Marzęta M, Centorotola G, Cornacchia A, Garcia Fierro R, Haenni M, Nielsen EM, Piveteau P, Barbier E, Morris D, Pomilio F, Brisse S, , High Prevalence of Klebsiella pneumoniae in European Food Products: a Multicentric Study Comparing Culture and Molecular Detection Methods., Microbiol Spectr 2022 02; 10(1): e0237621.
• 2022
  Bridel S, Watts SC, Judd LM, Harshegyi T, Passet V, Rodrigues C, Holt KE, Brisse S, , Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry., Res Microbiol ; 172(4-5): 103835.
• 2022
  Rodrigues C, Desai S, Passet V, Gajjar D, Brisse S, , Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147., Microb Genom 2022 01; 8(1): .
• 2021
  Moura A, Lefrancq N, Wirth T, Leclercq A, Borges V, Gilpin B, Dallman TJ, Frey J, Franz E, Nielsen EM, Thomas J, Pightling A, Howden BP, Tarr CL, Gerner-Smidt P, Cauchemez S, Salje H, Brisse S, Lecuit M, , , Emergence and global spread of Listeria monocytogenes main clinical clonal complex., Sci Adv 2021 Dec; 7(49): eabj9805.
• 2021
  Levi LI, Barbut F, Chopin D, Rondeau P, Lalande V, Jolivet S, Badell E, Brisse S, Lacombe K, Surgers L, , Cutaneous diphtheria: 3 case-reports to discuss determinants of re-emergence in resource-rich settings., Emerg Microbes Infect 2021 Nov; (): 1-7.
• 2021
  Rollin G, Rossi B, Brisse S, Decré D, Leflon-Guibout V, Bert F, Hoffmann I, Decousser JW, Fantin B, Lefort A, , Spontaneous and post-surgical/traumatic Klebsiella pneumoniae meningitis: two distinct clinic-microbiological entities., Int J Infect Dis 2021 Nov; (): .
• 2021
  Paireau J, Guillot S, Aït El Belghiti F, Matczak S, Trombert-Paolantoni S, Jacomo V, Taha MK, Salje H, Brisse S, Lévy-Bruhl D, Cauchemez S, Toubiana J, , Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study., Lancet Infect Dis 2021 Oct; (): .
• 2021
  Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S, , Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae., J Clin Microbiol 2021 Sep; (): JCM0158121.
• 2021
  Bouchez V, Guillot S, Landier A, Armatys N, Matczak S, , Toubiana J, Brisse S, Evolution of Bordetella pertussis over a 23-year period in France, 1996 to 2018., Euro Surveill 2021 Sep; 26(37): .
• 2021
  Badell E, Alharazi A, Criscuolo A, Almoayed KAA, Lefrancq N, Bouchez V, Guglielmini J, Hennart M, Carmi-Leroy A, Zidane N, Pascal-Perrigault M, Lebreton M, Martini H, Salje H, Toubiana J, Dureab F, Dhabaan G, Brisse S, Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study., Lancet Microbe 2021 Aug; 2(8): e386-e396.
• 2021
  Raffelsberger N, Hetland MAK, Svendsen K, Småbrekke L, Löhr IH, Andreassen LLE, Brisse S, Holt KE, Sundsfjord A, Samuelsen Ø, Gravningen K, , Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity., Gut Microbes ; 13(1): 1939599.
• 2021
  Hooban B, Fitzhenry K, Cahill N, Joyce A, O' Connor L, Bray JE, Brisse S, Passet V, Abbas Syed R, Cormican M, Morris D, , A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019., Environ Int 2021 07; 152(): 106466.
• 2021
  Biedrzycka M, Urbanowicz P, Guzek A, Brisse S, Gniadkowski M, Izdebski R, , Dissemination of Klebsiella pneumoniae ST147 NDM-1 in Poland, 2015-19., J Antimicrob Chemother 2021 Jun; (): .
• 2021
  Berbers G, van Gageldonk P, Kassteele JV, Wiedermann U, Desombere I, Dalby T, Toubiana J, Tsiodras S, Ferencz IP, Mullan K, Griskevicius A, Kolupajeva T, Vestrheim DF, Palminha P, Popovici O, Wehlin L, Kastrin T, Maďarová L, Campbell H, Ködmön C, Bacci S, Barkoff AM, He Q, , , Circulation of pertussis and poor protection against diphtheria among middle-aged adults in 18 European countries., Nat Commun 2021 05; 12(1): 2871.
• 2021
  Sermet-Gaudelus I, Temmam S, Huon C, Behillil S, Gajdos V, Bigot T, Lurier T, Chrétien D, Backovic M, Delaunay-Moisan A, Donati F, Albert M, Foucaud E, Mesplées B, Benoist G, Faye A, Duval-Arnould M, Cretolle C, Charbit M, Aubart M, Auriau J, Lorrot M, Kariyawasam D, Fertitta L, Orliaguet G, Pigneur B, Bader-Meunier B, Briand C, Enouf V, Toubiana J, Guilleminot T, van der Werf S, Leruez-Ville M, Eloit M, Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 Apr; 26(13): .
• 2021
  Jamet A, Guglielmini J, Brancotte B, Coureuil M, Euphrasie D, Meyer J, Roux J, Barnier JP, Bille E, Ferroni A, Magny JF, Bôle-Feysot C, Charbit A, Nassif X, Brisse S, , High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones., J Clin Microbiol 2021 Feb; 59(3): .
• 2021
  Batisti Biffignandi G, Gibbon MJ, Corbella M, Thorpe HA, Merla C, Castelli M, Kallonen T, Pegrum K, Brisse S, Corander J, Marone P, Feil EJ, Sassera D, , Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae., G3 (Bethesda) 2021 Feb; 11(2): .
• 2021
  Silva L, Grosso F, Rodrigues C, Ksiezarek M, Ramos H, Peixe L, , The success of particular Acinetobacter baumannii clones: accumulating resistance and virulence inside a sugary shield., J Antimicrob Chemother 2021 01; 76(2): 305-311.
• 2021
  Merdrignac L, Aït El Belghiti F, Pandolfi E, Jané M, Murphy J, Fabiánová K, García Cenoz M, Flem E, Guillot S, Tozzi AE, Carmona G, Habington A, Zavadilová J, Navasués A, Bøås H, Lévy-Brühl D, Ferretti B, Lanaspa M, O'Sullivan N, Křížová P, Fernandino L, Bekkevold T, Hanslik T, Muñoz-Almagro C, Bacci S, Spiteri G, Valenciano M, Moren A, , , , Incidence and severity of pertussis hospitalisations in infants aged less than 1 year in 37 hospitals of six EU/EEA countries, results of PERTINENT sentinel pilot surveillance system, December 2015 to December 2018., Euro Surveill 2021 Jan; 26(4): .
• 2021
  O'Neill MB, Quach H, Pothlichet J, Aquino Y, Bisiaux A, Zidane N, Deschamps M, Libri V, Hasan M, Zhang SY, Zhang Q, Matuozzo D, Cobat A, Abel L, Casanova JL, Naffakh N, Rotival M, Quintana-Murci L, , Single-Cell and Bulk RNA-Sequencing Reveal Differences in Monocyte Susceptibility to Influenza A Virus Infection Between Africans and Europeans., Front Immunol 2021 ; 12(): 768189.
• 2021
  Vu Thi Ngoc B, Brisse S, Dao Tuyet T, Vu Tien Viet D, Holt KE, Nguyen Vu T, Tran Thi Kieu H, Nguyen Thi Ngoc D, van Doorn HR, Wertheim HFL, Klebsiella pneumoniae with capsule type K64 is overrepresented among invasive disease in Vietnam., F1000Res 2021 ; 10(): 454.
• 2020
  Silva L, Rodrigues C, Lira A, Leão M, Mota M, Lopes P, Novais Â, Peixe L, , Fourier transform infrared (FT-IR) spectroscopy typing: a real-time analysis of an outbreak by carbapenem-resistant Klebsiella pneumoniae., Eur J Clin Microbiol Infect Dis 2020 Dec; 39(12): 2471-2475.
• 2020
  Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S, , Population genomics and antimicrobial resistance in Corynebacterium diphtheriae., Genome Med 2020 11; 12(1): 107.
• 2020
  Auffret N, Anghel R, Brisse S, Rey B, Schenesse D, Moquet O, , Elizabethkingia anophelis meningitis in a traveler returning from the Americas., Med Mal Infect 2020 Nov; (): .
• 2020
  Rakotomalala RS, Andrianirina ZZ, Ratsima E, Randrianandraina P, Randrianirina F, Edosoa GT, Rabenandrianina T, Badell E, Toubiana J, Andrianarimanana D, Brisse S, Rasamindrakotroka A, , Corynebacterium diphtheriae Infection in Mahajanga, Madagascar: First Case Report., J Trop Pediatr 2020 Oct; (): .
• 2020
  Huynh BT, Passet V, Rakotondrasoa A, Diallo T, Kerleguer A, Hennart M, Lauzanne A, Herindrainy P, Seck A, Bercion R, Borand L, Pardos de la Gandara M, Delarocque-Astagneau E, Guillemot D, Vray M, Garin B, Collard JM, Rodrigues C, Brisse S, Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors., Gut Microbes 2020 Sep; 11(5): 1287-1299.
• 2020
  Izdebski R, Sitkiewicz M, Urbanowicz P, Krawczyk M, Brisse S, Gniadkowski M, , Genomic background of the Klebsiella pneumoniae NDM-1 outbreak in Poland, 2012-18., J. Antimicrob. Chemother. 2020 Aug; (): .
• 2020
  Guillot S, Mizrahi A, Armatys N, Chat L, Le Monnier A, Brisse S, Toubiana J, , Low Detection Rate of Bordetella pertussis Using the BioFire FilmArray Respiratory Panel 2plus., Open Forum Infect Dis 2020 Aug; 7(8): ofaa267.
• 2020
  Rodrigues C, d'Humières C, Papin G, Passet V, Ruppé E, Brisse S, , Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage., Microb Genom 2020 08; 6(8): .
• 2020
  Alberto C, Osdoit S, Villani AP, Bellec L, Belmonte O, Badell E, Brisse S, Toubiana J, Schrenzel J, Bagny K, , Cutaneous ulcers revealing diphtheria: A re-emerging disease imported from Indian Ocean countries?, Ann Dermatol Venereol 2020 Jul; (): .
• 2020
  Rakotondrasoa A, Passet V, Herindrainy P, Garin B, Kermorvant-Duchemin E, Delarocque-Astagneau E, Guillemot D, Huynh BT, Brisse S, Collard JM, Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar., J Antimicrob Chemother 2020 Jul; 75(7): 1736-1746.
• 2020
  Rodgers E, Bentley SD, Borrow R, Bratcher HB, Brisse S, Brueggemann AB, Caugant DA, Findlow J, Fox L, Glennie L, Harrison LH, Harrison OB, Heyderman RS, van Rensburg MJ, Jolley KA, Kwambana-Adams B, Ladhani S, LaForce M, Levin M, Lucidarme J, MacAlasdair N, Maclennan J, Maiden MCJ, Maynard-Smith L, Muzzi A, Oster P, Rodrigues CMC, Ronveaux O, Serino L, Smith V, van der Ende A, Vázquez J, Wang X, Yezli S, Stuart JM, , The global meningitis genome partnership., J. Infect. 2020 Jun; (): .
• 2020
  Rodrigues C, Sousa C, Lopes JA, Novais Â, Peixe L, , A Front Line on Klebsiella pneumoniae Capsular Polysaccharide Knowledge: Fourier Transform Infrared Spectroscopy as an Accurate and Fast Typing Tool., mSystems 2020 Mar; 5(2): .
• 2020
  Barbier E, Rodrigues C, Depret G, Passet V, Gal L, Piveteau P, Brisse S, , The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples., Appl Environ Microbiol 2020 03; 86(7): .
• 2020
  Badell E, Hennart M, Rodrigues C, Passet V, Dazas M, Panunzi L, Bouchez V, Carmi-Leroy A, Toubiana J, Brisse S, , Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex., Res Microbiol ; 171(3-4): 122-127.
• 2020
  Miro E, Rossen JWA, Chlebowicz MA, Harmsen D, Brisse S, Passet V, Navarro F, Friedrich AW, García-Cobos S, , Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain., Front Microbiol 2019 ; 10(): 2961.
• 2020
  Wong A, Opinel A, Combes SJ, Toubiana J, Brisse S, Determining Factors for Pertussis Vaccination Policy: A Study in Five EU Countries, Vaccines (Basel) 2020 Jan;8(1).
• 2019
  Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales A, Saito R, Pongolini S, Brisse S, Feil E, Bandi C, Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae, Genome Biol Evol 2019 Oct;.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170]., Res Microbiol ; 170(6-7): 300.
• 2019
  Savin C, Criscuolo A, Guglielmini J, Le Guern AS, Carniel E, Pizarro-Cerdá J, Brisse S, Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization, Microb Genom 2019 Oct;.
• 2019
  Badell E, Guillot S, Tulliez M, Pascal M, Panunzi LG, Rose S, Litt D, Fry NK, Brisse S, Improved quadruplex real-time PCR assay for the diagnosis of diphtheria, J. Med. Microbiol. 2019 Sep;.
• 2019
  Ben Fraj I, Bouchez V, Smaoui H, Kechrid A, Brisse S, , Genome characteristics of Bordetella pertussis isolates from Tunisia., J. Med. Microbiol. 2019 Sep; 68(9): 1320-1323.
• 2019
  Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M, , Author Correction: Hypervirulent Listeria monocytogenes clones’ adaptation to mammalian gut accounts for their association with dairy products., Nat Commun 2019 Aug; 10(1): 3619.
• 2019
  Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, , The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
• 2019
  Brehony C, McGrath E, Brennan W, Tuohy A, Whyte T, Brisse S, Maiden M, Jolley K, Morris D, Cormican M, , An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase., J. Antimicrob. Chemother. 2019 07; 74(7): 1856-1862.
• 2019
  Mahon BM, Brehony C, Cahill N, McGrath E, O'Connor L, Varley A, Cormican M, Ryan S, Hickey P, Keane S, Mulligan M, Ruane B, Jolley KA, Maiden MC, Brisse S, Morris D, Detection of OXA-48-like-producing Enterobacterales in Irish recreational water, Sci. Total Environ. 2019 Nov;690:1-6.
• 2019
  Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M, , Hypervirulent Listeria monocytogenes clones’ adaption to mammalian gut accounts for their association with dairy products., Nat Commun 2019 Jun; 10(1): 2488.
• 2019
  Thiry D, Passet V, Danis-Wlodarczyk K, Lood C, Wagemans J, De Sordi L, van Noort V, Dufour N, Debarbieux L, Mainil JG, Brisse S, Lavigne R, , New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae., Viruses 2019 05; 11(5): .
• 2019
  Gaiarsa S, Batisti Biffignandi G, Esposito EP, Castelli M, Jolley KA, Brisse S, Sassera D, Zarrilli R, , Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes., Front Microbiol 2019 ; 10(): 930.
• 2019
  Ribeiro TG, Novais Â, Rodrigues C, Nascimento R, Freitas F, Machado E, Peixe L, , Dynamics of clonal and plasmid backgrounds of Enterobacteriaceae producing acquired AmpC in Portuguese clinical settings over time., Int J Antimicrob Agents 2019 May; 53(5): 650-656.
• 2019
  Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S, Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis, J. Clin. Microbiol. 2019 May;57(5).
• 2019
  Cahill N, O'Connor L, Mahon B, Varley Á, McGrath E, Ryan P, Cormican M, Brehony C, Jolley KA, Maiden MC, Brisse S, Morris D, Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales?, Sci. Total Environ. 2019 Apr;672:618-624.
• 2019
  Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M, , Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance., PLoS Negl Trop Dis 2019 04; 13(4): e0007374.
• 2019
  Toubiana J, Azarnoush S, Bouchez V, Landier A, Guillot S, Matczak S, Bonacorsi S, Brisse S, , Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics., Open Forum Infect Dis 2019 Apr; 6(4): ofz122.
• 2019
  Novais Â, Freitas AR, Rodrigues C, Peixe L, , Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing., Eur J Clin Microbiol Infect Dis 2019 Mar; 38(3): 427-448.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov., Res Microbiol ; 170(3): 165-170.
• 2019
  Painset A, Björkman JT, Kiil K, Guillier L, Mariet JF, Félix B, Amar C, Rotariu O, Roussel S, Perez-Reche F, Brisse S, Moura A, Lecuit M, Forbes K, Strachan N, Grant K, Møller-Nielsen E, Dallman TJ, , LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe., Microb Genom 2019 Feb; 5(2): .
• 2019
  Barkoff AM, Mertsola J, Pierard D, Dalby T, Hoegh SV, Guillot S, Stefanelli P, van Gent M, Berbers G, Vestrheim D, Greve-Isdahl M, Wehlin L, Ljungman M, Fry NK, Markey K, He Q, Pertactin-deficient Bordetella pertussis isolates: evidence of increased circulation in Europe, 1998 to 2015., Euro Surveill 2019 Feb; 24(7): .
• 2019
  Lepuschitz S, Schill S, Stoeger A, Pekard-Amenitsch S, Huhulescu S, Inreiter N, Hartl R, Kerschner H, Sorschag S, Springer B, Brisse S, Allerberger F, Mach RL, Ruppitsch W, Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals, Sci. Total Environ. 2019 Jan;662:227-235.
• 2019
  Merla C, Rodrigues C, Passet V, Corbella M, Thorpe HA, Kallonen TVS, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil EJ, Brisse S, , Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov., Front Microbiol 2019 ; 10(): 2360.
• 2018
  Scheifer C, Rolland-Debord C, Badell E, Reibel F, Aubry A, Perignon A, Patey O, Brisse S, Caumes E, Re-emergence of Corynebacterium diphtheriae, Med Mal Infect 2019 Sep;49(6):463-466.
• 2018
  Ben Fraj I, Kechrid A, Guillot S, Bouchez V, Brisse S, Guiso N, Smaoui H, Pertussis epidemiology in Tunisian infants and children and characterization of Bordetella pertussis isolates: results of a 9-year surveillance study, 2007 to 2016, J. Med. Microbiol. 2019 Feb;68(2):241-247.
• 2018
  Bouchez V, Baines SL, Guillot S, Brisse S, Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing, Microbiol Resour Announc 2018 Nov;7(19).
• 2018
  Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE, Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae, Genome Med 2018 10;10(1):77.
• 2018
  Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S, Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov, Int. J. Syst. Evol. Microbiol. 2018 Dec;68(12):3826-3831.
• 2018
  Nielsen HL, Tarpgaard IH, Fuglsang-Damgaard D, Thomsen PK, Brisse S, Dalager-Pedersen M, , Rare Elizabethkingia anophelis meningitis case in a Danish male., JMM Case Rep 2018 Aug; 5(8): e005163.
• 2018
  Lam MMC, Wyres KL, Duchêne S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE, Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination, Nat Commun 2018 07;9(1):2703.
• 2018
  Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE, Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations, Microb Genom 2018 Sep;4(9).
• 2018
  Rodrigues, Passet and Brisse, Identification of Klebsiella pneumoniae complex members using MALDI-TOF mass spectrometry, BioRxiv doi: https://doi.org/10.1101/350579 .
• 2018
  Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S, Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough, Emerging Infect. Dis. 2018 Jun;24(6):988-994.
• 2018
  Andrade LN, Novais Â, Stegani LMM, Ferreira JC, Rodrigues C, Darini ALC, Peixe L, , Virulence genes, capsular and plasmid types of multidrug-resistant CTX-M(-2, -8, -15) and KPC-2-producing Klebsiella pneumoniae isolates from four major hospitals in Brazil., Diagn Microbiol Infect Dis 2018 Jun; 91(2): 164-168.
• 2018
  Barkoff AM, Mertsola J, Pierard D, Dalby T, Hoegh SV, Guillot S, Stefanelli P, van Gent M, Berbers G, Vestrheim DF, Greve-Isdahl M, Wehlin L, Ljungman M, Fry NK, Markey K, Auranen K, He Q, Surveillance of Circulating Bordetella pertussis Strains in Europe during 1998 to 2015, J. Clin. Microbiol. 2018 05;56(5).
• 2018
  Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A, , Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing., mBio 2018 04; 9(2): .
• 2018
  Mendes AC, Novais Â, Campos J, Rodrigues C, Santos C, Antunes P, Ramos H, Peixe L, , mcr-1 in Carbapenemase-Producing Klebsiella pneumoniae with Hospitalized Patients, Portugal, 2016-2017., Emerg Infect Dis 2018 04; 24(4): 762-766.
• 2018
  Corelli B, Almeida AS, Sonego F, Castiglia V, Fevre C, Brisse S, Sansonetti PJ, Tournebize R, Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation, PLoS Negl Trop Dis 2018 Jan;12(1):e0006201.
• 2018
  Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR, , Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov., Antonie Van Leeuwenhoek 2018 Jan; 111(1): 55-72.
• 2018
  Rodrigues C, Passet V, Rakotondrasoa A, Brisse S, , Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry., Front Microbiol 2018 ; 9(): 3000.
• 2017
  Passet V, Brisse S, Description of Klebsiella grimontii sp. nov, Int. J. Syst. Evol. Microbiol. 2018 Jan;68(1):377-381.
• 2017
  Samuelsen Ø, Overballe-Petersen S, Bjørnholt JV, Brisse S, Doumith M, Woodford N, Hopkins KL, Aasnæs B, Haldorsen B, Sundsfjord A, , Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014, PLoS ONE 2017;12(11):e0187832.
• 2017
  Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V, Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s, BMC Genomics 2017 Nov;18(1):873.
• 2017
  Rodrigues C, Machado E, Fernandes S, Peixe L, Novais Â, , Different Escherichia coli B2-ST131 clades (B and C) producing extended-spectrum β-lactamases (ESBL) colonizing residents of Portuguese nursing homes., Epidemiol Infect 2017 11; 145(15): 3303-3306.
• 2017
  Guiso N, Levy C, Romain O, Guillot S, Werner A, Rondeau MC, Béchet S, Cohen R, Whooping cough surveillance in France in pediatric private practice in 2006-2015, Vaccine 2017 10;35(45):6083-6088.
• 2017
  Bouchez V, Douché T, Dazas M, Delaplane S, Matondo M, Chamot-Rooke J, Guiso N, , Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates., Toxins (Basel) 2017 09; 9(10): .
• 2017
  Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M, , Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France., Emerg Infect Dis 2017 Sep; 23(9): 1462-1470.
• 2017
  Rodrigues C, Mendes AC, Sima F, Bavlovič J, Machado E, Novais Â, Peixe L, , Long-Term Care Facility (LTCF) Residents Colonized With Multidrug-Resistant (MDR) Klebsiella pneumoniae Lineages Frequently Causing Infections in Portuguese Clinical Institutions., Infect Control Hosp Epidemiol 2017 09; 38(9): 1127-1130.
• 2017
  Otsuka N, Guiso N, Bouchez V, The length of poly(C) stretch in the Bordetella pertussis Pfim3 promoter determines the vag or vrg function of the fim3 gene, Microbiology (Reading, Engl.) 2017 Sep;163(9):1364-1368.
• 2017
  Bialek-Davenet S, Mayer N, Vergalli J, Duprilot M, Brisse S, Pagès JM, Nicolas-Chanoine MH, In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification, Sci Rep 2017 Jul;7(1):6722.
• 2017
  Saffarian A, Touchon M, Mulet C, Tournebize R, Passet V, Brisse S, Rocha EPC, Sansonetti PJ, Pédron T, Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts, BMC Genomics 2017 07;18(1):525.
• 2017
  Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S, , Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain., Nat Commun 2017 05; 8(): 15483.
• 2017
  Bouchez V, AlBitar-Nehmé S, Novikov A, Guiso N, Caroff M, Bordetella holmesii: Lipid A Structures and Corresponding Genomic Sequences Comparison in Three Clinical Isolates and the Reference Strain ATCC 51541, Int J Mol Sci 2017 May;18(5).
• 2017
  Villa L, Feudi C, Fortini D, Brisse S, Passet V, Bonura C, Endimiani A, Mammina C, Ocampo AM, Jimenez JN, Doumith M, Woodford N, Hopkins K, Carattoli A, Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone, Microb Genom 2017 Apr;3(4):e000110.
• 2017
  Blin C, Passet V, Touchon M, Rocha EPC, Brisse S, Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae, Environ. Microbiol. 2017 May;19(5):1881-1898.
• 2017
  Rodrigues C, Novais Â, Sousa C, Ramos H, Coque TM, Cantón R, Lopes JA, Peixe L, , Elucidating constraints for differentiation of major human Klebsiella pneumoniae clones using MALDI-TOF MS., Eur J Clin Microbiol Infect Dis 2017 Feb; 36(2): 379-386.
• 2017
  Billard-Pomares T, Rouyer C, Walewski V, Badell-Ocando E, Dumas M, Zumelzu C, Jaureguy F, Brisse S, Caux F, Bouchaud O, Carbonnelle E, , Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal., Open Forum Infect Dis 2017 ; 4(1): ofw271.
• 2017
  Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S, , Citrobacter europaeus sp. nov., isolated from water and human faecal samples., Int J Syst Evol Microbiol 2017 Jan; 67(1): 170-173.
• 2016
  Melot B, Brisse S, Breurec S, Passet V, Malpote E, Lamaury I, Thiery G, Hoen B, Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean, BMC Infect. Dis. 2016 Dec;16(1):736.
• 2016
  Lebreton A, Stavru F, Brisse S, Cossart P, 1926-2016: 90 Years of listeriology, Microbes Infect. 2016 Dec;18(12):711-723.
• 2016
  Dreyer M, Aguilar-Bultet L, Rupp S, Guldimann C, Stephan R, Schock A, Otter A, Schüpbach G, Brisse S, Lecuit M, Frey J, Oevermann A, , Listeria monocytogenes sequence type 1 is predominant in ruminant rhombencephalitis., Sci Rep 2016 Nov; 6(): 36419.
• 2016
  Martin RM, Cao J, Brisse S, Passet V, Wu W, Zhao L, Malani PN, Rao K, Bachman MA, Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae, mSphere 2016 Sep-Oct;1(5).
• 2016
  Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S, , Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes., Nat Microbiol 2016 Oct; 2(): 16185.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 10;1(11):16209.
• 2016
  Beaufils E, Dommergues MA, Gaillat J, Guiso N, Knezovic-Daniel N, Pinquier D, Riethmuller D, [Pertussis: Where do we stand 10years after the introduction of cocooning vaccination strategy in France?], Gynecol Obstet Fertil 2016 Sep;.
• 2016
  Benamrouche N, Hasnaoui S, Badell E, Guettou B, Lazri M, Guiso N, Rahal K, Microbiological and molecular characterization of Corynebacterium diphtheriae isolated in Algeria between 1992 and 2015, Clin. Microbiol. Infect. 2016 Aug;.
• 2016
  Czobor I, Novais Â, Rodrigues C, Chifiriuc MC, Mihăescu G, Lazăr V, Peixe L, , Efficient transmission of IncFIIY and IncL plasmids and Klebsiella pneumoniae ST101 clone producing OXA-48, NDM-1 or OXA-181 in Bucharest hospitals., Int J Antimicrob Agents 2016 Aug; 48(2): 223-4.
• 2016
  Guimarães LC, Viana MV, Benevides LJ, Mariano DC, Veras AA, Sá PH, Rocha FS, Vilas Boas PC, Soares SC, Barbosa MS, Guiso N, Badell E, Azevedo V, Ramos RT, Silva A, Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 03-8664 Isolated from a Human Throat, Genome Announc 2016 Jul;4(4).
• 2016
  Breurec S, Criscuolo A, Diancourt L, Rendueles O, Vandenbogaert M, Passet V, Caro V, Rocha EP, Touchon M, Brisse S, Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
• 2016
  Guiso N, Wirsing von König CH, Surveillance of pertussis: methods and implementation, Expert Rev Anti Infect Ther 2016 Jul;14(7):657-67.
• 2016
  Guillot S, Guiso N, Follow-Up of External Quality Controls for PCR-Based Diagnosis of Whooping Cough in a Hospital Laboratory Network (Renacoq) and in Other Hospital and Private Laboratories in France, J. Clin. Microbiol. 2016 Aug;54(8):2169-71.
• 2016
  Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Aschard H, Denamur M, Cywes-Bentley C, Schwarz S, Tenaillon O, Andremont A, Picard B, Mekalanos J, Brisse S, Denamur E, , Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans., Mol Biol Evol 2016 Apr; 33(4): 898-914.
• 2016
  Rodrigues C, Machado E, Fernandes S, Peixe L, Novais Â, , An update on faecal carriage of ESBL-producing Enterobacteriaceae by Portuguese healthy humans: detection of the H30 subclone of B2-ST131 Escherichia coli producing CTX-M-27., J Antimicrob Chemother 2016 Apr; 71(4): 1120-2.
• 2016
  Guimarães LC, Viana MV, Benevides LJ, Mariano DC, Veras AA, Sá PH, Rocha FS, Vilas Boas PC, Soares SC, Barbosa MS, Guiso N, Badell E, Carneiro AR, Azevedo V, Ramos RT, Silva A, Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 04-7514, Isolated from a Dog in France, Genome Announc 2016 Mar;4(2).
• 2016
  Guimarães LC, Viana MV, Benevides LJ, Mariano DC, Veras AA, Sá PH, Rocha FS, Vilas Boas PC, Soares SC, Barbosa MS, Guiso N, Badell E, Carneiro AR, Azevedo V, Ramos RT, Silva A, Draft Genome Sequence of Corynebacterium ulcerans Strain 04-3911, Isolated from Humans, Genome Announc 2016 Mar;4(2).
• 2016
  Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC, Azevedo V, Silva A, Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows, J Genomics 2016;4:7-9.
• 2016
  Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M, , Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity., Nat Genet 2016 Mar; 48(3): 308-313.
• 2016
  Breurec S, Melot B, Hoen B, Passet V, Schepers K, Bastian S, Brisse S, Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae, Emerging Infect. Dis. 2016 Mar;22(3):529-31.
• 2016
  Mendes AC, Rodrigues C, Pires J, Amorim J, Ramos MH, Novais Â, Peixe L, , Importation of Fosfomycin Resistance fosA3 Gene to Europe., Emerg Infect Dis 2016 Feb; 22(2): 346-8.
• 2016
  Thouvenin M, Beilouny B, Badell E, Guiso N, [Corynebacterium ulcerans pulmonary infection], Ann. Biol. Clin. (Paris) 2016 Jan-Feb;74(1):117-20.
• 2016
  Rodrigues C, Bavlovič J, Machado E, Amorim J, Peixe L, Novais Â, , KPC-3-Producing Klebsiella pneumoniae in Portugal Linked to Previously Circulating Non-CG258 Lineages and Uncommon Genetic Platforms (Tn4401d-IncFIA and Tn4401d-IncN)., Front Microbiol 2016 ; 7(): 1000.
• 2015
  Bouchez V, Hegerle N, Strati F, Njamkepo E, Guiso N, New Data on Vaccine Antigen Deficient Bordetella pertussis Isolates, Vaccines (Basel) 2015;3(3):751-70.
• 2015
  Izdebski R, Fiett J, Urbanowicz P, Baraniak A, Derde LP, Bonten MJ, Carmeli Y, Goossens H, Hryniewicz W, Brun-Buisson C, Brisse S, Gniadkowski M, ,, Phylogenetic lineages, clones and β-lactamases in an international collection of Klebsiella oxytoca isolates non-susceptible to expanded-spectrum cephalosporins, J. Antimicrob. Chemother. 2015 Dec;70(12):3230-7.
• 2015
  Bouchez V, Guiso N, Bordetella pertussis, B. parapertussis, vaccines and cycles of whooping cough, Pathog Dis 2015 Oct;73(7).
• 2015
  Tubiana S, Belchior E, Guillot S, Guiso N, Lévy-Bruhl D,, Monitoring the Impact of Vaccination on Pertussis in Infants Using an Active Hospital-based Pediatric Surveillance Network: Results from 17 Years’ Experience, 1996-2012, France, Pediatr. Infect. Dis. J. 2015 Aug;34(8):814-20.
• 2015
  Onori R, Gaiarsa S, Comandatore F, Pongolini S, Brisse S, Colombo A, Cassani G, Marone P, Grossi P, Minoja G, Bandi C, Sassera D, Toniolo A, Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital, J. Clin. Microbiol. 2015 Sep;53(9):2861-8.
• 2015
  Holt KE, Wertheim H, Zadoks RN, Baker S, Whitehouse CA, Dance D, Jenney A, Connor TR, Hsu LY, Severin J, Brisse S, Cao H, Wilksch J, Gorrie C, Schultz MB, Edwards DJ, Nguyen KV, Nguyen TV, Dao TT, Mensink M, Minh VL, Nhu NT, Schultsz C, Kuntaman K, Newton PN, Moore CE, Strugnell RA, Thomson NR, Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health, Proc. Natl. Acad. Sci. U.S.A. 2015 Jul;112(27):E3574-81.
• 2015
  El Khatib N, Ferroni A, Le Bourgeois M, Chedevergne F, Clairicia M, Avril H, Guiso N, Sermet-Gaudelus I, Persistent Bordetella bronchiseptica infection in a child with cystic fibrosis: Relationship to bacterial phenotype, J. Cyst. Fibros. 2015 Sep;14(5):E13-5.
• 2015
  Gheorghe I, Novais Â, Grosso F, Rodrigues C, Chifiriuc MC, Lazar V, Peixe L, , Snapshot on carbapenemase-producing Pseudomonas aeruginosa and Acinetobacter baumannii in Bucharest hospitals reveals unusual clones and novel genetic surroundings for blaOXA-23., J Antimicrob Chemother 2015 Apr; 70(4): 1016-20.
• 2015
  Benevides Lde J, Viana MV, Mariano DC, Rocha Fde S, Bagano PC, Folador EL, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Soares Sde C, Carneiro A, Ramos R, Badell-Ocando E, Guiso N, Silva A, Figueiredo H, Azevedo V, Guimarães LC, Genome Sequence of Corynebacterium ulcerans Strain FRC11, Genome Announc 2015 Mar;3(2).
• 2015
  Rodrigues C, Machado E, Pires J, Ramos H, Novais Â, Peixe L, , Increase of widespread A, B1 and D Escherichia coli clones producing a high diversity of CTX-M-types in a Portuguese hospital., Future Microbiol 2015 ; 10(7): 1125-31.
• 2014
  van Gent M, Heuvelman CJ, van der Heide HG, Hallander HO, Advani A, Guiso N, Wirsing von Kőnig CH, Vestrheim DF, Dalby T, Fry NK, Pierard D, Detemmerman L, Zavadilova J, Fabianova K, Logan C, Habington A, Byrne M, Lutyńska A, Mosiej E, Pelaz C, Gröndahl-Yli-Hannuksela K, Barkoff AM, Mertsola J, Economopoulou A, He Q, Mooi FR, Analysis of Bordetella pertussis clinical isolates circulating in European countries during the period 1998-2012, Eur. J. Clin. Microbiol. Infect. Dis. 2015 Apr;34(4):821-30.
• 2014
  Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S, Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups, Emerging Infect. Dis. 2014 Nov;20(11):1812-20.
• 2014
  Rodrigues C, Machado E, Ramos H, Peixe L, Novais Â, , Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: a successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK)., Int J Med Microbiol 2014 Nov; 304(8): 1100-8.
• 2014
  Hegerle N, Dore G, Guiso N, Pertactin deficient Bordetella pertussis present a better fitness in mice immunized with an acellular pertussis vaccine, Vaccine 2014 Nov;32(49):6597-600.
• 2014
  Vandentorren S, Guiso N, Badell E, Boisrenoult P, Micaelo M, Troché G, Lecouls P, Moquet MJ, Patey O, Belchior E, Toxigenic Corynebacterium ulcerans in a fatal human case and her feline contacts, France, March 2014, Euro Surveill. 2014;19(38).
• 2014
  Silva Ado S, Baraúna RA, de Sá PC, das Graças DA, Carneiro AR, Thouvenin M, Azevedo V, Badell E, Guiso N, da Silva AL, Ramos RT, Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the Bronchitic Aspiration of a Patient in France, Genome Announc 2014 Jan;2(1).
• 2014
  Rodrigues C, Novais Â, Machado E, Peixe L, , Detection of VIM-34, a novel VIM-1 variant identified in the intercontinental ST15 Klebsiella pneumoniae clone., J Antimicrob Chemother 2014 Jan; 69(1): 274-5.
• 2013
  Dinu S, Damian M, Badell E, Dragomirescu CC, Guiso N, New diphtheria toxin repressor types depicted in a Romanian collection of Corynebacterium diphtheriae isolates, J. Basic Microbiol. 2014 Oct;54(10):1136-9.
• 2013
  Rodrigues C, Machado E, Peixe L, Novais A, , IncI1/ST3 and IncN/ST1 plasmids drive the spread of blaTEM-52 and blaCTX-M-1/-32 in diverse Escherichia coli clones from different piggeries., J Antimicrob Chemother 2013 Oct; 68(10): 2245-8.
• 2012
  Novais A, Rodrigues C, Branquinho R, Antunes P, Grosso F, Boaventura L, Ribeiro G, Peixe L, , Spread of an OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae species and clones., Eur J Clin Microbiol Infect Dis 2012 Nov; 31(11): 3057-63.
• 2011
  Barraud O, Badell E, Denis F, Guiso N, Ploy MC, Antimicrobial drug resistance in Corynebacterium diphtheriae mitis, Emerging Infect. Dis. 2011 Nov;17(11):2078-80.
• 2011
  Poirel L, Castanheira M, Carrër A, Rodriguez CP, Jones RN, Smayevsky J, Nordmann P, , OXA-163, an OXA-48-related class D β-lactamase with extended activity toward expanded-spectrum cephalosporins., Antimicrob Agents Chemother 2011 Jun; 55(6): 2546-51.
• 2010
  Bolt F, Cassiday P, Tondella ML, Dezoysa A, Efstratiou A, Sing A, Zasada A, Bernard K, Guiso N, Badell E, Rosso ML, Baldwin A, Dowson C, Multilocus sequence typing identifies evidence for recombination and two distinct lineages of Corynebacterium diphtheriae, J. Clin. Microbiol. 2010 Nov;48(11):4177-85.
• 2009
  Tanne A, Ma B, Boudou F, Tailleux L, Botella H, Badell E, Levillain F, Taylor ME, Drickamer K, Nigou J, Dobos KM, Puzo G, Vestweber D, Wild MK, Marcinko M, Sobieszczuk P, Stewart L, Lebus D, Gicquel B, Neyrolles O, A murine DC-SIGN homologue contributes to early host defense against Mycobacterium tuberculosis, J. Exp. Med. 2009 Sep;206(10):2205-20.
• 2009
  Chassin C, Picardeau M, Goujon JM, Bourhy P, Quellard N, Darche S, Badell E, d'Andon MF, Winter N, Lacroix-Lamandé S, Buzoni-Gatel D, Vandewalle A, Werts C, TLR4- and TLR2-mediated B cell responses control the clearance of the bacterial pathogen, Leptospira interrogans, J. Immunol. 2009 Aug;183(4):2669-77.
• 2008
  Badell E, Nicolle F, Clark S, Majlessi L, Boudou F, Martino A, Castello-Branco L, Leclerc C, Lewis DJ, Marsh PD, Gicquel B, Winter N, Protection against tuberculosis induced by oral prime with Mycobacterium bovis BCG and intranasal subunit boost based on the vaccine candidate Ag85B-ESAT-6 does not correlate with circulating IFN-gamma producing T-cells, Vaccine 2009 Jan;27(1):28-37.
• 2008
  Morel C, Badell E, Abadie V, Robledo M, Setterblad N, Gluckman JC, Gicquel B, Boudaly S, Winter N, Mycobacterium bovis BCG-infected neutrophils and dendritic cells cooperate to induce specific T cell responses in humans and mice, Eur. J. Immunol. 2008 Feb;38(2):437-47.
• 2007
  Martinez V, Carcelain G, Badell E, Jouan M, Mauger I, Sellier P, Truffot C, Bricaire F, Arend SM, Ottenhoff T, Autran B, Gicquel B, T-cell and serological responses to Erp, an exported Mycobacterium tuberculosis protein, in tuberculosis patients and healthy individuals, BMC Infect. Dis. 2007 Jul;7:83.