• 2025
  Markovich Y, Moura A, Gomis J, Leclercq A, Gómez-Martín Á, Bracq-Dieye H, Palacios-Gorba C, Tessaud-Rita N, Ortolá S, Vales G, Yáñez MA, Thouvenot P, Pérot P, Lecuit M, Quereda JJ, Predominance of L. monocytogenes Lineage I Clones in Wastewater, Ruminants, and Natural Environments., Environ Microbiol 2025 Sep; 27(9): e70169.
• 2025
  Julia Faillace Thiesen, Elise Jacquemet, Pascal Campagne, Denis Chatelain, Etienne Brochot, Yves-Edouard Herpe, Nolwenn M Dheilly, Fabrice Bouilloux, Bénédicte Rognon, Alexandre Douablin, Guillaume Leboucher, Florent Percher, Marc Eloit, Philippe Pérot, Molecular detection of hrHPV-induced high-grade squamous intraepithelial lesions of the cervix through a targeted RNA next generation sequencing assay, Molecular Medicine, 2025, 31 (1), pp.215. ⟨10.1186/s10020-025-01238-x⟩.
• 2025
  Pérot, P., Bielle, F., Plu, I., Bigot, T., Seilhean, D., Eloit, M., Metagenomics for Brain Biopsy Samples of Infectious Lesions, Neuromethods, vol 223.
• 2024
  Pérot P, Tondeur L, Moutailler S, Chrétien D, Corre-Catelin N, Vayssier-Taussat M, Eloit M, Chirouze C, Cazorla C, Broad range molecular detection methods identify only Borrelia spp. in erythema migrans biopsies and blood of tick-bitten patients., One Health 2024 Dec; 19(): 100886.
• 2024
  Bratuleanu BE, Chretien D, Bigot T, Regnault B, Pérot P, Savuta G, Eloit M, Temmam S, Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe., Parasit Vectors 2024 Nov; 17(1): 482.
• 2024
  Hamelin B, Pérot P, Pichler I, Haslbauer JD, Hardy D, Hing D, Loulizi S, Regnault B, Pieters A, Heijnen I, Berkemeier C, Mancuso M, Kufner V, Willi N, Jamet A, Dheilly N, Eloit M, Recher M, Huber M, Mertz KD, Circovirus Hepatitis in Immunocompromised Patient, Switzerland., Emerg Infect Dis 2024 Oct; 30(10): 2140-2144.
• 2024
  Momenilandi M, Lévy R, Sobrino S, Li J, Lagresle-Peyrou C, Esmaeilzadeh H, Fayand A, Le Floc'h C, Guérin A, Mina ED, Shearer D, Delmonte OM, Yatim A, Mulder K, Mancini M, Rinchai D, Denis A, Neehus AL, Balogh K, Brendle S, Rokni-Zadeh H, Changi-Ashtiani M, Seeleuthner Y, Deswarte C, Bessot B, Cremades C, Materna M, Cederholm A, Ogishi M, Philippot Q, Beganovic O, Ackermann M, Wuyts M, Khan T, Fouéré S, Herms F, Chanal J, Palterer B, Bruneau J, Molina TJ, Leclerc-Mercier S, Prétet JL, Youssefian L, Vahidnezhad H, Parvaneh N, Claeys KG, Schrijvers R, Luka M, Pérot P, Fourgeaud J, Nourrisson C, Poirier P, Jouanguy E, Boisson-Dupuis S, Bustamante J, Notarangelo LD, Christensen N, Landegren N, Abel L, Marr N, Six E, Langlais D, Waterboer T, Ginhoux F, Ma CS, Tangye SG, Meyts I, Lachmann N, Hu J, Shahrooei M, Bossuyt X, Casanova JL, Béziat V, FLT3L governs the development of partially overlapping hematopoietic lineages in humans and mice., Cell 2024 May; 187(11): 2817-2837.e31.
• 2024
  Fourgeaud J, Regnault B, Ok V, Da Rocha N, Sitterlé É, Mekouar M, Faury H, Milliancourt-Seels C, Jagorel F, Chrétien D, Bigot T, Troadec É, Marques I, Serris A, Seilhean D, Neven B, Frange P, Ferroni A, Lecuit M, Nassif X, Lortholary O, Leruez-Ville M, Pérot P, Eloit M, Jamet A, Performance of clinical metagenomics in France: a prospective observational study., Lancet Microbe 2024 Jan; 5(1): e52-e61.
• 2024
  Du-Thanh A, Foulongne V, Dereure O, Eloit M, Pérot P, A quantitative assay for the assessment of cutaneous human papillomaviruses and polyomaviruses over time: A proof-of-concept in two patients with atopic dermatitis and psoriasis., PLoS One 2024 ; 19(4): e0297907.
• 2023
  Pérot P, Da Rocha N, Farcet MR, Kreil TR, Eloit M, Human Circovirus is not detected in plasma pools for fractionation., Transfusion 2023 Nov; (): .
• 2023
  Fourgeaud J, Lecuit MM, Pérot P, Bruneau J, Regnault B, Da Rocha N, Bessaud M, Picard C, Jeziorski É, Fournier B, Levy R, Marçais A, Blanche S, Frange P, Fischer A, Cavazzana M, Ferroni A, Jamet A, Leruez-Ville M, Eloit M, Neven B, Chronic Aichi Virus Infection As a Cause of Long-Lasting Multiorgan Involvement in Patients With Primary Immune Deficiencies., Clin Infect Dis 2023 Aug; 77(4): 620-628.
• 2023
  Riller Q, Fourgeaud J, Bruneau J, De Ravin SS, Smith G, Fusaro M, Meriem S, Magerus A, Luka M, Abdessalem G, Lhermitte L, Jamet A, Six E, Magnani A, Castelle M, Lévy R, Lecuit MM, Fournier B, Winter S, Semeraro M, Pinto G, Abid H, Mahlaoui N, Cheikh N, Florkin B, Frange P, Jeziorski E, Suarez F, Sarrot-Reynauld F, Nouar D, Debray D, Lacaille F, Picard C, Pérot P, Regnault B, Da Rocha N, de Cevins C, Delage L, Pérot BP, Vinit A, Carbone F, Brunaud C, Marchais M, Stolzenberg MC, Asnafi V, Molina T, Rieux-Laucat F, Notarangelo LD, Pittaluga S, Jais JP, Moshous D, Blanche S, Malech H, Eloit M, Cavazzana M, Fischer A, Ménager MM, Neven B, Late-onset enteric virus infection associated with hepatitis (EVAH) in transplanted SCID patients., J Allergy Clin Immunol 2023 Jun; 151(6): 1634-1645.
• 2023
  Avramescu M, Isnard P, Temmam S, Chevalier A, Bastard P, Attia M, Berthaud R, Fila M, Dossier C, Hogan J, Ulinski T, Leguevaques D, Louillet F, Casado EM, Halimi JM, Cloarec S, Zaloszyc A, Faudeux C, Rousset-Rouvière C, Clavé S, Harambat J, Rollot E, Simon T, Nallet-Amate M, Ranchin B, Bacchetta J, Porcheret F, Bernard J, Ryckewaert A, Jamet A, Fourgeaud J, Da Rocha N, Pérot P, Kuperwasser N, Bouazza N, Rabant M, Duong Van Huyen JP, Robert MP, Zuber J, Casanova JL, Eloit M, Sermet-Gaudelus I, Boyer O, Acute tubulointerstitial nephritis with or without uveitis: a novel form of post-acute COVID-19 syndrome in children., Kidney Int 2023 Jun; 103(6): 1193-1198.
• 2023
  Kende J, Bonomi M, Temmam S, Regnault B, Pérot P, Eloit M, Bigot T, Virus Pop-Expanding Viral Databases by Protein Sequence Simulation., Viruses 2023 May; 15(6): .
• 2023
  Susana Boluda, Karima Mokhtari, Bruno Mégarbane, Djillali Annane, Bertrand Mathon, Albert Cao, Clovis Adam, Alexandre Androuin, Franck Bielle, Guy Brochier, Frédéric Charlotte, Lydia Chougar, Khalid Hamid El Hachimi, Marc Eloit, Stéphane Haïk, Dominique Hervé, Amal Kasri, Valentin Leducq, Stéphane Lehéricy, Etienne Levavasseur, Christian Lobsiger, Geoffroy Lorin de La Grandmaison, Isabelle Malet, Isabelle Malissin, Stéphane Marot, Serge Marty, Philippe Pérot, Isabelle Plu, Annick Prigent, Lev Stimmer, Marie-Claude Potier, Anne-Geneviève Marcelin, Benoît Delatour, Charles Duyckaerts, Danielle Seilhean, Golgi localization of SARS-CoV-2 spike protein and interaction with furin in cerebral COVID-19 microangiopathy: a clue to the central nervous system involvement?, Free Neuropathology, 4, 1.
• 2023
  Pardinhas C, Filipe R, Vergnaud P, Grapin M, Ferrière E, Jamet A, Fourgeaud J, Da Rocha N, Pérot P, Boyer O, Rabant M, Van Huyen JD, Isnard P, , Renal arcuate vein thrombosis-induced acute kidney injury: a rare multiple-Hit-mediated disease., Clin Kidney J 2023 Feb; 16(2): 367-373.
• 2023
  Pérot P, Fourgeaud J, Rouzaud C, Regnault B, Da Rocha N, Fontaine H, Le Pavec J, Dolidon S, Garzaro M, Chrétien D, Morcrette G, Molina TJ, Ferroni A, Leruez-Ville M, Lortholary O, Jamet A, Eloit M, , Circovirus Hepatitis Infection in Heart-Lung Transplant Patient, France., Emerg Infect Dis 2023 Jan; 29(2): .
• 2022
  Fourgeaud J, Regnault B, Faury H, Da Rocha N, Jamet A, Stirnemann J, Eloit M, Perot P, Leruez-Ville M, Driessen M, , , Fetal Zika virus infection diagnosed by metagenomic next-generation sequencing in amniotic fluid., Ultrasound Obstet Gynecol 2022 Sep; (): .
• 2022
  Pérot P, Bigot T, Temmam S, Regnault B, Eloit M, Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery., Viruses 2022 Sep; 14(9): .
• 2022
  Pommier JD, Gorman C, Crabol Y, Bleakley K, Sothy H, Santy K, Tran HTT, Nguyen LV, Bunnakea E, Hlaing CS, Aye AMM, Cappelle J, Herrant M, Piola P, Rosset B, Chevalier V, Tarantola A, Channa M, Honnorat J, Pinto AL, Rattanavong S, Vongsouvath M, Mayxay M, Phangmanixay S, Phongsavath K, Tin OS, Kyaw LL, Tin HH, Linn K, Tran TMH, Pérot P, Thuy NTT, Hien N, Phan PH, Buchy P, Dussart P, Laurent D, Eloit M, Dubot-Pérès A, Lortholary O, de Lamballerie X, Newton PN, Lecuit M, Childhood encephalitis in the Greater Mekong region (the SouthEast Asia Encephalitis Project): a multicentre prospective study., Lancet Glob Health 2022 Jul; 10(7): e989-e1002.
• 2022
  Temmam S, Vongphayloth K, Baquero E, Munier S, Bonomi M, Regnault B, Douangboubpha B, Karami Y, Chrétien D, Sanamxay D, Xayaphet V, Paphaphanh P, Lacoste V, Somlor S, Lakeomany K, Phommavanh N, Pérot P, Dehan O, Amara F, Donati F, Bigot T, Nilges M, Rey FA, van der Werf S, Brey PT, Eloit M, Bat coronaviruses related to SARS-CoV-2 and infectious for human cells., Nature 2022 Apr; 604(7905): 330-336.
• 2021
  Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero Salazar, Sandie Munier, Massimiliano Bonomi, Béatrice Régnault, Bounsavane Douangboubpha, Yasaman Karami, Delphine Chretien, Daosavanh Sanamxay, Vilakhan Xayaphet, Phetphoumin Paphaphanh, Vincent Lacoste, Somphavanh Somlor, Khaithong Lakeomany, Nothasin Phommavanh, Philippe Pérot, Flora Donati, Thomas Bigot, Michael Nilges, Félix Rey, Sylvie van Der Werf, Paul Brey, Marc Eloit, Coronaviruses with a SARS-CoV-2-like receptor-binding domain allowing ACE2-mediated entry into human cells isolated from bats of Indochinese peninsula, 2021.
• 2021
  Pérot P, Bielle F, Bigot T, Foulongne V, Bolloré K, Chrétien D, Gil P, Gutiérrez S, L'Ambert G, Mokhtari K, Hellert J, Flamand M, Tamietti C, Coulpier M, Huard de Verneuil A, Temmam S, Couderc T, De Sousa Cunha E, Boluda S, Plu I, Delisle MB, Bonneville F, Brassat D, Fieschi C, Malphettes M, Duyckaerts C, Mathon B, Demeret S, Seilhean D, Eloit M, Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients with Hypogammaglobulinemia., Clin Infect Dis 2021 May; 72(10): 1701-1708.
• 2021
  Regnault B, Evrard B, Plu I, Dacheux L, Troadec E, Cozette P, Chrétien D, Duchesne M, Jean-Michel V, Jamet A, Leruez M, Pérot P, Bourhy H, Eloit M, Seilhean D, , First case of lethal encephalitis in Western Europe due to European bat lyssavirus type 1., Clin Infect Dis 2021 May; (): .
• 2021
  Bratuleanu BE, Temmam S, Chrétien D, Regnault B, Pérot P, Bouchier C, Bigot T, Savuța G, Eloit M, The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health., Transbound Emerg Dis 2022 May; 69(3): 1387-1403.
• 2021
  Regnault B, Bigot T, Ma L, Pérot P, Temmam S, Eloit M, Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results., Viruses 2021 Feb; 13(2): .
• 2020
  Bigot T, Temmam S, Pérot P, Eloit M, RVDB-prot, a reference viral protein database and its HMM profiles., F1000Res 2019 ; 8(): 530.
• 2020
  Pérot P, Falguieres M, Arowas L, Laude H, Foy JP, Goudot P, Corre-Catelin N, Ungeheuer MN, Caro V, Heard I, Eloit M, Gessain A, Bertolus C, Berthet N, Investigation of viral etiology in potentially malignant disorders and oral squamous cell carcinomas in non-smoking, non-drinking patients, PLoS ONE 2020;15(4):e0232138.
• 2020
  Temmam S, Barbarino A, Maso D, Behillil S, Enouf V, Huon C, Jaraud A, Chevallier L, Backovic M, Pérot P, Verwaerde P, Tiret L, van der Werf S, Eloit M, Absence of SARS-CoV-2 infection in cats and dogs in close contact with a cluster of COVID-19 patients in a veterinary campus., One Health 2020 Dec; 10(): 100164.
• 2019
  Temmam S, Bigot T, Chrétien D, Gondard M, Pérot P, Pommelet V, Dufour E, Petres S, Devillers E, Hoem T, Pinarello V, Hul V, Vongphayloth K, Hertz JC, Loiseau I, Dumarest M, Duong V, Vayssier-Taussat M, Grandadam M, Albina E, Dussart P, Moutailler S, Cappelle J, Brey PT, Eloit M, Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses., mSphere 2019 Nov; 4(6): .
• 2019
  Pérot P, Biton A, Marchetta J, Pourcelot AG, Nazac A, Marret H, Hébert T, Chrétien D, Demazoin MC, Falguières M, Arowas L, Laude H, Heard I, Eloit M, Broad-Range Papillomavirus Transcriptome as a Biomarker of Papillomavirus-Associated Cervical High-Grade Cytology, J Mol Diagn 2019 Sep;21(5):768-781.
• 2019
  Du-Thanh A, Pérot P, Foulongne V, Dereure O, Guillot B, Eloit M, No evidence for viral transcripts in dermatofibrosarcoma protuberans, Br. J. Dermatol. 2019 Sep;181(3):634-636.
• 2019
  Leclerc-Mercier S, Moshous D, Neven B, Mahlaoui N, Martin L, Pellier I, Blanche S, Picard C, Fischer A, Perot P, Eloit M, Fraitag S, Bodemer C, Cutaneous granulomas with primary immunodeficiency in children: a report of 17 new patients and a review of the literature, J Eur Acad Dermatol Venereol 2019 Jul;33(7):1412-1420.
• 2019
  Haddad-Boubaker S, Joffret ML, Pérot P, Bessaud M, Meddeb Z, Touzi H, Delpeyroux F, Triki H, Eloit M, Metagenomic analysis identifies human adenovirus 31 in children with acute flaccid paralysis in Tunisia, Arch. Virol. 2019 Mar;164(3):747-755.
• 2019
  Buchbinder D, Hauck F, Albert MH, Rack A, Bakhtiar S, Shcherbina A, Deripapa E, Sullivan KE, Perelygina L, Eloit M, Neven B, Pérot P, Moshous D, Suarez F, Bodemer C, Bonilla FA, Vaz LE, Krol AL, Klein C, Seppanen M, Nugent DJ, Singh J, Ochs HD, Rubella Virus-Associated Cutaneous Granulomatous Disease: a Unique Complication in Immune-Deficient Patients, Not Limited to DNA Repair Disorders, J. Clin. Immunol. 2019 01;39(1):81-89.
• 2018
  Pérot P, Diagnostiquer les maladies infectieuses à l’ère de la génomique, HAL Pasteur.
• 2018
  Bock S, Mullins CS, Klar E, Pérot P, Maletzki C, Linnebacher M, Murine Endogenous Retroviruses Are Detectable in Patient-Derived Xenografts but Not in Patient-Individual Cell Lines of Human Colorectal Cancer, Front Microbiol 2018;9:789.
• 2017
  Becker J, Pérot P, Cheynet V, Oriol G, Mugnier N, Mommert M, Tabone O, Textoris J, Veyrieras JB, Mallet F, A comprehensive hybridization model allows whole HERV transcriptome profiling using high density microarray, BMC Genomics 2017 04;18(1):286.
• 2017
  Pérot P, Lecuit M, Eloit M, , Astrovirus Diagnostics., Viruses 2017 Jan; 9(1): .
• 2017
  Neven B, Pérot P, Bruneau J, Pasquet M, Ramirez M, Diana JS, Luzi S, Corre-Catelin N, Chardot C, Moshous D, Leclerc Mercier S, Mahlaoui N, Aladjidi N, Le Bail B, Lecuit M, Bodemer C, Molina TJ, Blanche S, Eloit M, , Cutaneous and Visceral Chronic Granulomatous Disease Triggered by a Rubella Virus Vaccine Strain in Children With Primary Immunodeficiencies., Clin Infect Dis 2017 Jan; 64(1): 83-86.
• 2016
  Duong V, Mey C, Eloit M, Zhu H, Danet L, Huang Z, Zou G, Tarantola A, Cheval J, Perot P, Laurent D, Richner B, Ky S, Heng S, Touch S, Sovann L, van Doorn R, Tan Tran T, Farrar JJ, Wentworth DE, Das SR, Stockwell TB, Manuguerra JC, Delpeyroux F, Guan Y, Altmeyer R, Buchy P, Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia, Emerg Microbes Infect 2016 Sep;5(9):e104.
• 2015
  Pérot P, Mullins CS, Naville M, Bressan C, Hühns M, Gock M, Kühn F, Volff JN, Trillet-Lenoir V, Linnebacher M, Mallet F, Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes, Oncotarget 2015 Nov;6(37):40095-111.
• 2015
  Frémond ML, Pérot P, Muth E, Cros G, Dumarest M, Mahlaoui N, Seilhean D, Desguerre I, Hébert C, Corre-Catelin N, Neven B, Lecuit M, Blanche S, Picard C, Eloit M, , Next-Generation Sequencing for Diagnosis and Tailored Therapy: A Case Report of Astrovirus-Associated Progressive Encephalitis., J Pediatric Infect Dis Soc 2015 Sep; 4(3): e53-7.
• 2013
  Pérot P, Cheynet V, Decaussin-Petrucci M, Oriol G, Mugnier N, Rodriguez-Lafrasse C, Ruffion A, Mallet F, Microarray-based identification of individual HERV loci expression: application to biomarker discovery in prostate cancer, J Vis Exp 2013 Nov;(81):e50713.
• 2012
  Pérot P, Bolze PA, Mallet F, From Viruses to Genes: Syncytins, Witzany G. (eds) Viruses: Essential Agents of Life. Springer, Dordrecht.
• 2012
  Pérot P, Mugnier N, Montgiraud C, Gimenez J, Jaillard M, Bonnaud B, Mallet F, Microarray-based sketches of the HERV transcriptome landscape, PLoS ONE 2012;7(6):e40194.
• 2010
  Pérot P, Montgiraud C, Lavillette D, Mallet F, A Comparative Portrait of Retroviral Fusogens and Syncytins, Larsson LI. (eds) Cell Fusions. Springer, Dordrecht.