• 2025
  Pérot, P., Bielle, F., Plu, I., Bigot, T., Seilhean, D., Eloit, M., Metagenomics for Brain Biopsy Samples of Infectious Lesions, Neuromethods, vol 223.
• 2024
  Bratuleanu BE, Chretien D, Bigot T, Regnault B, Pérot P, Savuta G, Eloit M, Temmam S, Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe., Parasit Vectors 2024 Nov; 17(1): 482.
• 2024
  Fourgeaud J, Regnault B, Ok V, Da Rocha N, Sitterlé É, Mekouar M, Faury H, Milliancourt-Seels C, Jagorel F, Chrétien D, Bigot T, Troadec É, Marques I, Serris A, Seilhean D, Neven B, Frange P, Ferroni A, Lecuit M, Nassif X, Lortholary O, Leruez-Ville M, Pérot P, Eloit M, Jamet A, Performance of clinical metagenomics in France: a prospective observational study., Lancet Microbe 2024 Jan; 5(1): e52-e61.
• 2023
  Temmam S, Tu TC, Regnault B, Bonomi M, Chrétien D, Vendramini L, Duong TN, Phong TV, Yen NT, Anh HN, Son TH, Anh PT, Amara F, Bigot T, Munier S, Thong VD, van der Werf S, Nam VS, Eloit M, Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence., Viruses 2023 Sep; 15(9): .
• 2023
  Bennouna A, Tantely ML, Raharinosy V, Andriamandimby SF, Bigot T, Chrétien D, Jacquemet E, Volant S, Temmam S, Dussart P, Lacoste V, Girod R, Eloit M, Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar., Viruses 2023 Aug; 15(9): .
• 2023
  Kende J, Bonomi M, Temmam S, Regnault B, Pérot P, Eloit M, Bigot T, Virus Pop-Expanding Viral Databases by Protein Sequence Simulation., Viruses 2023 May; 15(6): .
• 2023
  Temmam S, Montagutelli X, Herate C, Donati F, Regnault B, Attia M, Baquero Salazar E, Chretien D, Conquet L, Jouvion G, Pipoli Da Fonseca J, Cokelaer T, Amara F, Relouzat F, Naninck T, Lemaitre J, Derreudre-Bosquet N, Pascal Q, Bonomi M, Bigot T, Munier S, Rey FA, Le Grand R, van der Werf S, Eloit M, SARS-CoV-2-related bat virus behavior in human-relevant models sheds light on the origin of COVID-19., EMBO Rep 2023 Apr; 24(4): e56055.
• 2023
  Bratuleanu BE, Raileanu C, Chrétien D, Guardado-Calvo P, Bigot T, Savuta G, Temmam S, Eloit M, A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep., Microorganisms 2023 Jan; 11(1): .
• 2023
  Bratuleanu BE, Răileanu C, Bennouna A, Chretien D, Bigot T, Guardado-Calvo P, Savuta G, Moutailler S, Eloit M, Temmam S, Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses., Transbound Emerg Dis 2023 ; 2023(): 6661723.
• 2022
  Pérot P, Bigot T, Temmam S, Regnault B, Eloit M, Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery., Viruses 2022 Sep; 14(9): .
• 2022
  Temmam S, Vongphayloth K, Baquero E, Munier S, Bonomi M, Regnault B, Douangboubpha B, Karami Y, Chrétien D, Sanamxay D, Xayaphet V, Paphaphanh P, Lacoste V, Somlor S, Lakeomany K, Phommavanh N, Pérot P, Dehan O, Amara F, Donati F, Bigot T, Nilges M, Rey FA, van der Werf S, Brey PT, Eloit M, Bat coronaviruses related to SARS-CoV-2 and infectious for human cells., Nature 2022 Apr; 604(7905): 330-336.
• 2022
  Bratuleanu BE, Temmam S, Munier S, Chrétien D, Bigot T, van der Werf S, Savuta G, Eloit M, Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta., Front Vet Sci 2022 ; 9(): 863814.
• 2021
  Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero Salazar, Sandie Munier, Massimiliano Bonomi, Béatrice Régnault, Bounsavane Douangboubpha, Yasaman Karami, Delphine Chretien, Daosavanh Sanamxay, Vilakhan Xayaphet, Phetphoumin Paphaphanh, Vincent Lacoste, Somphavanh Somlor, Khaithong Lakeomany, Nothasin Phommavanh, Philippe Pérot, Flora Donati, Thomas Bigot, Michael Nilges, Félix Rey, Sylvie van Der Werf, Paul Brey, Marc Eloit, Coronaviruses with a SARS-CoV-2-like receptor-binding domain allowing ACE2-mediated entry into human cells isolated from bats of Indochinese peninsula, 2021.
• 2021
  Pérot P, Bielle F, Bigot T, Foulongne V, Bolloré K, Chrétien D, Gil P, Gutiérrez S, L'Ambert G, Mokhtari K, Hellert J, Flamand M, Tamietti C, Coulpier M, Huard de Verneuil A, Temmam S, Couderc T, De Sousa Cunha E, Boluda S, Plu I, Delisle MB, Bonneville F, Brassat D, Fieschi C, Malphettes M, Duyckaerts C, Mathon B, Demeret S, Seilhean D, Eloit M, Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients with Hypogammaglobulinemia., Clin Infect Dis 2021 May; 72(10): 1701-1708.
• 2021
  Bratuleanu BE, Temmam S, Chrétien D, Regnault B, Pérot P, Bouchier C, Bigot T, Savuța G, Eloit M, The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health., Transbound Emerg Dis 2022 May; 69(3): 1387-1403.
• 2021
  Fontanet A, Tondeur L, Grant R, Temmam S, Madec Y, Bigot T, Grzelak L, Cailleau I, Besombes C, Ungeheuer MN, Renaudat C, Perlaza BL, Arowas L, Jolly N, Pellerin SF, Kuhmel L, Staropoli I, Huon C, Chen KY, Crescenzo-Chaigne B, Munier S, Charneau P, Demeret C, Bruel T, Eloit M, Schwartz O, Hoen B, SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020., Euro Surveill 2021 Apr; 26(15): .
• 2021
  Sermet-Gaudelus I, Temmam S, Huon C, Behillil S, Gajdos V, Bigot T, Lurier T, Chrétien D, Backovic M, Delaunay-Moisan A, Donati F, Albert M, Foucaud E, Mesplées B, Benoist G, Faye A, Duval-Arnould M, Cretolle C, Charbit M, Aubart M, Auriau J, Lorrot M, Kariyawasam D, Fertitta L, Orliaguet G, Pigneur B, Bader-Meunier B, Briand C, Enouf V, Toubiana J, Guilleminot T, van der Werf S, Leruez-Ville M, Eloit M, Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 Apr; 26(13): .
• 2021
  Regnault B, Bigot T, Ma L, Pérot P, Temmam S, Eloit M, Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results., Viruses 2021 Feb; 13(2): .
• 2020
  Bigot T, Temmam S, Pérot P, Eloit M, RVDB-prot, a reference viral protein database and its HMM profiles., F1000Res 2019 ; 8(): 530.
• 2020
  Temmam S, Hul V, Bigot T, Bessaud M, Chrétien D, Hoem T, Gorman C, Duong V, Dussart P, Cappelle J, Eloit M, Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization., Infect Genet Evol 2020 Mar; 78(): 104130.
• 2020
  Birnberg L, Temmam S, Aranda C, Correa-Fiz F, Talavera S, Bigot T, Eloit M, Busquets N, Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes., Viruses 2020 Feb; 12(3): .
• 2020
  Gondard M, Temmam S, Devillers E, Pinarello V, Bigot T, Chrétien D, Aprelon R, Vayssier-Taussat M, Albina E, Eloit M, Moutailler S, RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles., Viruses 2020 Jan; 12(2): .
• 2019
  Temmam S, Vongphayloth K, Hertz JC, Sutherland I, Douangboubpha B, Grandadam M, Bigot T, Brey PT, Eloit M, Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies., Microbiol Resour Announc 2019 Nov; 8(46): .
• 2019
  Temmam S, Bigot T, Chrétien D, Gondard M, Pérot P, Pommelet V, Dufour E, Petres S, Devillers E, Hoem T, Pinarello V, Hul V, Vongphayloth K, Hertz JC, Loiseau I, Dumarest M, Duong V, Vayssier-Taussat M, Grandadam M, Albina E, Dussart P, Moutailler S, Cappelle J, Brey PT, Eloit M, Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses., mSphere 2019 Nov; 4(6): .
• 2019
  Temmam S, Chrétien D, Bigot T, Dufour E, Petres S, Desquesnes M, Devillers E, Dumarest M, Yousfi L, Jittapalapong S, Karnchanabanthoeng A, Chaisiri K, Gagnieur L, Cosson JF, Vayssier-Taussat M, Morand S, Moutailler S, Eloit M, Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand., Front Microbiol 2019 ; 10(): 2315.
• 2019
  Bigot T, Guglielmini J, Criscuolo A, Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences, Data Brief 25:104212.
• 2019
  Temmam S, Hul V, Bigot T, Hoem T, Gorman C, Duong V, Dussart P, Cappelle J, Eloit M, A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools., Microbiol Resour Announc 2019 Apr; 8(15): .
• 2017
  Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X, Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium, Genome Biol Evol 2017 12;9(12):3413-3431.
• 2015
  Ferrandiz-Rovira M, Bigot T, Allainé D, Callait-Cardinal MP, Cohas A, Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?, Heredity (Edinb) 2015 May;114(5):485-93.
• 2013
  Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY, Bio++: efficient extensible libraries and tools for computational molecular evolution, Mol. Biol. Evol. 2013 Aug;30(8):1745-50.
• 2013
  Bigot T, Daubin V, Lassalle F, Perrière G, TPMS: a set of utilities for querying collections of gene trees, BMC Bioinformatics 2013 Mar;14:109.
• 2012
  Käfer J, Talianová M, Bigot T, Michu E, Guéguen L, Widmer A, Žlůvová J, Glémin S, Marais GA, Patterns of molecular evolution in dioecious and non-dioecious Silene, J. Evol. Biol. 2013 Feb;26(2):335-46.