• 2022
  Pipoli da Fonseca J, Kornobis E, Turc E, Enouf V, Lemée L, Cokelaer T, Monot M, , Capturing SARS-CoV-2 from patient samples with low viral abundance: a comparative analysis., Sci Rep 2022 Nov; 12(1): 19274.
• 2022
  Harimanana A, Rakotondrasoa A, Rivoarilala LO, Criscuolo A, Opatowski L, Rakotomanana EFN, Herindrainy P, Collard JM, Crucitti T, Huynh BT, , , Neonatal acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the community of a low-income country (NeoLIC): protocol for a household cohort study in Moramanga, Madagascar., BMJ Open 2022 Sep; 12(9): e061463.
• 2022
  Kämpfer P, Lipski A, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Bacillus rhizoplanae sp. nov. from maize roots., Int J Syst Evol Microbiol 2022 Jul; 72(7): .
• 2022
  Legrand V, Kergrohen T, Joly N, Criscuolo A, ROCK: digital normalization of whole genome sequencing data, JOSS 2022 May;7(73):3790.
• 2022
  Kämpfer P, Glaeser SP, Busse HJ, McInroy JA, Clermont D, Criscuolo A, , Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere., Int J Syst Evol Microbiol 2022 May; 72(5): .
• 2022
  Palma F, Mangone I, Janowicz A, Moura A, Chiaverini A, Torresi M, Garofolo G, Criscuolo A, Brisse S, Di Pasquale A, Cammà C, Radomski N, , In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes., BMC Genomics 2022 Mar; 23(1): 235.
• 2021
  Kämpfer P, Busse HJ, Clermont D, Criscuolo A, Glaeser SP, , Devosia equisanguinis sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2021 Nov; 71(11): .
• 2021
  Kämpfer P, Busse HJ, McInroy JA, Clermont D, Criscuolo A, Glaeser SP, , Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays., Int J Syst Evol Microbiol 2021 Oct; 71(10): .
• 2021
  Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S, , Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae., J Clin Microbiol 2021 Sep; (): JCM0158121.
• 2021
  Charmet T, Schaeffer L, Grant R, Galmiche S, Chény O, Von Platen C, Maurizot A, Rogoff A, Omar F, David C, Septfons A, Cauchemez S, Gaymard A, Lina B, Lefrancois LH, Enouf V, van der Werf S, Mailles A, Levy-Bruhl D, Carrat F, Fontanet A, , Impact of original, B.1.1.7, and B.1.351/P.1 SARS-CoV-2 lineages on vaccine effectiveness of two doses of COVID-19 mRNA vaccines: Results from a nationwide case-control study in France., Lancet Reg Health Eur 2021 Sep; 8(): 100171.
• 2021
  Aujoulat F, Mazuet C, Criscuolo A, Popoff MR, Enault C, Diancourt L, Jumas-Bilak E, Lavigne JP, Marchandin H, Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names., Syst Appl Microbiol 2021 Jul; 44(5): 126235.
• 2021
  Uwimana A, Legrand E, Stokes BH, Ndikumana JM, Warsame M, Umulisa N, Ngamije D, Munyaneza T, Mazarati JB, Munguti K, Campagne P, Criscuolo A, Ariey F, Murindahabi M, Ringwald P, Fidock DA, Mbituyumuremyi A, Menard D, , Author Correction: Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda., Nat Med 2021 Jun; 27(6): 1113-1115.
• 2021
  Colcombet-Cazenave B, Druart K, Bonnet C, Petit C, Spérandio O, Guglielmini J, Wolff N, , Phylogenetic analysis of Harmonin homology domains., BMC Bioinformatics 2021 Apr; 22(1): 190.
• 2021
  Sermet-Gaudelus I, Temmam S, Huon C, Behillil S, Gajdos V, Bigot T, Lurier T, Chrétien D, Backovic M, Delaunay-Moisan A, Donati F, Albert M, Foucaud E, Mesplées B, Benoist G, Faye A, Duval-Arnould M, Cretolle C, Charbit M, Aubart M, Auriau J, Lorrot M, Kariyawasam D, Fertitta L, Orliaguet G, Pigneur B, Bader-Meunier B, Briand C, Enouf V, Toubiana J, Guilleminot T, van der Werf S, Leruez-Ville M, Eloit M, , Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 04; 26(13): .
• 2021
  Schumann P, Kalensee F, Cao J, Criscuolo A, Clermont D, Köhler JM, Meier-Kolthoff JP, Neumann-Schaal M, Tindall BJ, Pukall R, , Reclassification of Haloactinobacterium glacieicola as Occultella glacieicola gen. nov., comb. nov., of Haloactinobacterium album as Ruania alba comb. nov, with an emended description of the genus Ruania, recognition that the genus names Haloactinobacterium and Ruania are heterotypic synonyms and description of Occultella aeris sp. nov., a halotolerant isolate from surface soil sampled at an ancient copper smelter., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
• 2021
  Kämpfer P, Glaeser SP, McInroy JA, Clermont D, Criscuolo A, Busse HJ, , Pseudomonas carbonaria sp. nov., isolated from charcoal., Int J Syst Evol Microbiol 2021 Apr; 71(4): .
• 2021
  Kämpfer P, Busse HJ, Glaeser SP, Clermont D, Criscuolo A, Mietke H, , Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011., Int J Syst Evol Microbiol 2021 Mar; 71(3): .
• 2021
  Jamet A, Guglielmini J, Brancotte B, Coureuil M, Euphrasie D, Meyer J, Roux J, Barnier JP, Bille E, Ferroni A, Magny JF, Bôle-Feysot C, Charbit A, Nassif X, Brisse S, , High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones., J Clin Microbiol 2021 Feb; 59(3): .
• 2021
  Pierre Garneret,Etienne Coz, Elian Martin, Jean-Claude Manuguerra, Elodie Brient-Litzler, Vincent Enouf, Daniel Felipe González Obando, Jean-Christophe Olivo-Marin, Fabrice Monti, Sylvie van der Werf, Jessica Vanhomwegen, Patrick Tabeling, Performing point-of-care molecular testing for SARS-CoV-2 with RNA extraction and isothermal amplification, PLOS ONE, 16(1), e0243712 - January 2021.
• 2020
  Kämpfer P, Irgang R, Glaeser SP, Busse HJ, Criscuolo A, Clermont D, Avendaño-Herrera R, , Flavobacterium salmonis sp. nov. isolated from Atlantic salmon (Salmo salar) and formal proposal to reclassify Flavobacterium spartansii as a later heterotypic synonym of Flavobacterium tructae., Int J Syst Evol Microbiol 2020 Dec; 70(12): 6147-6154.
• 2020
  Mühle E, Abry C, Leclerc P, Goly GM, Criscuolo A, Busse HJ, Kämpfer P, Bernardet JF, Clermont D, Chesneau O, , Flavobacterium bizetiae sp. nov., isolated from diseased freshwater fish in Canada at the end of the 1970s., Int J Syst Evol Microbiol 2020 Nov; (): .
• 2020
  Criscuolo A, On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference, F1000Res. 2020; 9:1309.
• 2020
  Ramezani M, Pourmohyadini M, Nikou MM, Makzum S, Schumann P, Clermont D, Criscuolo A, Amoozegar MA, Kämpfer P, Spröer C, , Halomonas lysinitropha sp. nov., a novel halophilic bacterium isolated from a hypersaline wetland., Int J Syst Evol Microbiol 2020 Oct; (): .
• 2020
  Kämpfer P, Glaeser SP, McInroy JA, Xu J, Busse HJ, Clermont D, Criscuolo A, , Flavobacterium panici sp. nov. isolated from the rhizosphere of the switchgrass Panicum virgatum., Int J Syst Evol Microbiol 2020 Oct; (): .
• 2020
  Menu E, Criscuolo A, Desnos-Ollivier M, Cassagne C, D'Incan E, Furst S, Ranque S, Berger P, Dromer F, , Saprochaete clavata Outbreak Infecting Cancer Center through Dishwasher., Emerg Infect Dis 2020 Sep; 26(9): 2031-2038.
• 2020
  Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar F, van der Werf S, Enouf V, Simon-Loriere E, , Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020., Euro Surveill. 2020 07; 25(26): .
• 2020
  Guglielmini J, Woo AC, Krupovic M, Forterre P, Gaia M, Reply to Ku and Sun: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes, Proc. Natl. Acad. Sci. U.S.A. 2020 Feb;117(6):2749-2750.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170]., Res Microbiol ; 170(6-7): 300.
• 2019
  Chapeton-Montes D, Plourde L, Bouchier C, Ma L, Diancourt L, Criscuolo A, Popoff MR, Brüggemann H, The population structure of Clostridium tetani deduced from its pan-genome, Sci Rep 2019 Aug;9(1):11220.
• 2019
  Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S, , The speciation and hybridization history of the genus Salmonella., Microb Genom 2019 08; 5(8): .
• 2019
  Kämpfer P, Busse HJ, McInroy JA, Criscuolo A, Clermont D, Glaeser SP, , Xinfangfangia humi sp. nov., isolated from soil amended with humic acid., Int J Syst Evol Microbiol 2019 Jul; 69(7): 2070-2075.
• 2019
  Kämpfer P, Busse HJ, Galatis H, Criscuolo A, Clermont D, Bizet C, Glaeser SP, , Paracoccus haematequi sp. nov., isolated from horse blood., Int J Syst Evol Microbiol 2019 Jun; 69(6): 1682-1688.
• 2019
  Kämpfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP, , Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis., Int J Syst Evol Microbiol 2019 May; 69(5): 1438-1442.
• 2019
  Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S, Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis, J. Clin. Microbiol. 2019 May;57(5).
• 2019
  Kämpfer P, Busse HJ, Criscuolo A, Bizet C, Clermont D, McInroy JA, Glaeser SP, Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid, Int. J. Syst. Evol. Microbiol. 2019 Apr;.
• 2019
  Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M, , Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance., PLoS Negl Trop Dis 2019 04; 13(4): e0007374.
• 2019
  Aujoulat F, Popoff MR, Diancourt L, Criscuolo A, Jean-Pierre H, Jumas-Bilak E, Marchandin H, Whole-Genome Sequences of a Cluster of 14 Unidentified Related sp. Strains from Human Clinical Samples and Type Strains of 3 Validated Species, Microbiol Resour Announc 2019 Mar;8(12).
• 2019
  Diancourt L, Sautereau J, Criscuolo A, Popoff MR, Two Clostridium perfringens Type E Isolates in France, Toxins 2019 Mar;11(3):E138.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov., Res Microbiol ; 170(3): 165-170.
• 2019
  Nadimpalli M, Vuthy Y, de Lauzanne A, Fabre L, Criscuolo A, Gouali M, Huynh BT, Naas T, Phe T, Borand L, Jacobs J, Kerléguer A, Piola P, Guillemot D, Le Hello S, Delarocque-Astagneau E, Meat and Fish as Sources of Extended-Spectrum β-Lactamase-Producing Escherichia coli, Cambodia, Emerg Infect Dis 2019 01; 25(1):126-31.
• 2018
  Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S, Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov, Int. J. Syst. Evol. Microbiol. 2018 Dec;68(12):3826-3831.
• 2018
  Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S, Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough, Emerging Infect. Dis. 2018 Jun;24(6):988-994.
• 2018
  Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A, , Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing., mBio 2018 04; 9(2): .
• 2018
  Criscuolo A, Chesneau O, Clermont D, Bizet C, , Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)., Genome Announc 2018 Apr; 6(14): .
• 2018
  Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR, , Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov., Antonie Van Leeuwenhoek 2018 Jan; 111(1): 55-72.
• 2017
  Christo-Foroux E, Vallaeys T, Loux V, Dassa E, Deutscher J, Wandersman C, Livernois A, Hot C, Criscuolo A, Dauga C, Clermont D, Chesneau O, , Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group., Syst Appl Microbiol 2017 Oct; 40(7): 401-410.
• 2017
  Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M, , Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France., Emerg Infect Dis 2017 Sep; 23(9): 1462-1470.
• 2017
  Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D, , Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter., Int J Syst Evol Microbiol 2017 Sep; 67(9): 3192-3197.
• 2017
  Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S, , Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain., Nat Commun 2017 05; 8(): 15483.
• 2017
  Yazouli LE, Criscuolo A, Hejaji H, Bouaaza M, Elmdaghri N, Alami AA, Amraoui A, Dakka N, Radouani F, Molecular characterization of Chlamydia pneumoniae associated to atherosclerosis, Pathog Dis 2017 Apr;.
• 2016
  Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S, , Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes., Nat Microbiol 2016 Oct; 2(): 16185.
• 2016
  Antunes LC, Poppleton D, Klingl A, Criscuolo A, Dupuy B, Brochier-Armanet C, Beloin C, Gribaldo S, Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes, Elife 2016;5.
• 2016
  Breurec S, Criscuolo A, Diancourt L, Rendueles O, Vandenbogaert M, Passet V, Caro V, Rocha EP, Touchon M, Brisse S, Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.