• 2020
  Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar F, van der Werf S, Enouf V, Simon-Loriere E, , Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020., Euro Surveill. 2020 07; 25(26): .
• 2020
  Manet C, Simon-Lorière E, Jouvion G, Hardy D, Prot M, Conquet L, Flamand M, Panthier JJ, Sakuntabhai A, Montagutelli X, , Genetic Diversity of Collaborative Cross Mice Controls Viral Replication, Clinical Severity, and Brain Pathology Induced by Zika Virus Infection, Independently of Oas1b., J. Virol. 2020 01; 94(3): .
• 2019
  Roth C, Cantaert T, Colas C, Prot M, Casadémont I, Levillayer L, Thalmensi J, Langlade-Demoyen P, Gerke C, Bahl K, Ciaramella G, Simon-Loriere E, Sakuntabhai A, A Modified mRNA Vaccine Targeting Immunodominant NS Epitopes Protects Against Dengue Virus Infection in HLA Class I Transgenic Mice, Front. Immunol. 2019 Jun;10 (1424).
• 2018
  Chazal M, Beauclair G, Gracias S, Najburg V, Simon-Lorière E, Tangy F, Komarova AV, Jouvenet N, RIG-I Recognizes the 5′ Region of Dengue and Zika Virus Genomes., Cell Rep. 2018 Jul 10;24(2):320-328.
• 2018
  Fernandez-Garcia MD, Volle R, Joffret ML, Sadeuh-Mba SA, Gouandjika-Vasilache I, Kebe O, Wiley MR, Majumdar M, Simon-Loriere E, Sakuntabhai A, Palacios G, Martin J, Delpeyroux F, Ndiaye K, Bessaud M, , Genetic Characterization of Enterovirus A71 Circulating in Africa., Emerging Infect. Dis. 2018 04; 24(4): 754-757.
• 2018
  Oliveira M, Lert-Itthiporn W, Cavadas B, Fernandes V, Chuansumrit A, Anunciação O, Casademont I, Koeth F, Penova M, Tangnararatchakit K, Khor CC, Paul R, Malasit P, Matsuda F, Simon-Lorière E, Suriyaphol P, Pereira L, Sakuntabhai A, Joint ancestry and association test indicate two distinct pathogenic pathways involved in classical dengue fever and dengue shock syndrome, PLoS Negl Trop Dis 2018 02;12(2):e0006202.
• 2017
  Simon-Lorière E, Duong V, Tawfik A, Ung S, Ly S, Casadémont I, Prot M, Courtejoie N, Bleakley K, Buchy P, Tarantola A, Dussart P, Cantaert T, Sakuntabhai A, , Increased adaptive immune responses and proper feedback regulation protect against clinical dengue., Sci Transl Med 2017 Aug; 9(405): .
• 2017
  Monel B, Compton AA, Bruel T, Amraoui S, Burlaud-Gaillard J, Roy N, Guivel-Benhassine F, Porrot F, Génin P, Meertens L, Sinigaglia L, Jouvenet N, Weil R, Casartelli N, Demangel C, Simon-Lorière E, Moris A, Roingeard P, Amara A, Schwartz O, , Zika virus induces massive cytoplasmic vacuolization and paraptosis-like death in infected cells., EMBO J. 2017 06; 36(12): 1653-1668.
• 2017
  Simon-Loriere E, Faye O, Prot M, Casademont I, Fall G, Fernandez-Garcia MD, Diagne MM, Kipela JM, Fall IS, Holmes EC, Sakuntabhai A, Sall AA, Autochthonous Japanese Encephalitis with Yellow Fever Coinfection in Africa, N. Engl. J. Med. 2017 04;376(15):1483-1485.
• 2017
  Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A, Virus genomes reveal factors that spread and sustained the Ebola epidemic, Nature 2017 Apr;544(7650):309-315.
• 2016
  Urbanowicz RA, McClure CP, Sakuntabhai A, Sall AA, Kobinger G, Müller MA, Holmes EC, Rey FA, Simon-Loriere E, Ball JK, Human Adaptation of Ebola Virus during the West African Outbreak, Cell 2016 Nov;167(4):1079-1087.e5.
• 2016
  Mounce BC, Cesaro T, Moratorio G, Hooikaas PJ, Yakovleva A, Werneke SW, Smith EC, Poirier EZ, Simon-Loriere E, Prot M, Tamietti C, Vitry S, Volle R, Khou C, Frenkiel MP, Sakuntabhai A, Delpeyroux F, Pardigon N, Flamand M, Barba-Spaeth G, Lafon M, Denison MR, Albert ML, Vignuzzi M, , Inhibition of Polyamine Biosynthesis Is a Broad-Spectrum Strategy against RNA Viruses., J. Virol. 2016 Nov; 90(21): 9683-9692.
• 2016
  Ghouzzi VE, Bianchi FT, Molineris I, Mounce BC, Berto GE, Rak M, Lebon S, Aubry L, Tocco C, Gai M, Chiotto AM, Sgrò F, Pallavicini G, Simon-Loriere E, Passemard S, Vignuzzi M, Gressens P, Di Cunto F, ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53, Cell Death Dis 2016 Oct;7(10):e2440.
• 2016
  Mounce BC, Poirier EZ, Passoni G, Simon-Loriere E, Cesaro T, Prot M, Stapleford KA, Moratorio G, Sakuntabhai A, Levraud JP, Vignuzzi M, , Interferon-Induced Spermidine-Spermine Acetyltransferase and Polyamine Depletion Restrict Zika and Chikungunya Viruses., Cell Host Microbe 2016 Aug; 20(2): 167-77.
• 2015
  Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, Manuguerra JC, Holmes EC, Sall AA, Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
• 2015
  Simon-Loriere E, Lin RJ, Kalayanarooj SM, Chuansumrit A, Casademont I, Lin SY, Yu HP, Lert-Itthiporn W, Chaiyaratana W, Tangthawornchaikul N, Tangnararatchakit K, Vasanawathana S, Chang BL, Suriyaphol P, Yoksan S, Malasit P, Despres P, Paul R, Lin YL, Sakuntabhai A, High Anti-Dengue Virus Activity of the OAS Gene Family Is Associated With Increased Severity of Dengue, J. Infect. Dis. 2015 Jun;.
• 2013
  Hamoudi M, Simon-Loriere E, Gasser R, Negroni M, Genetic diversity of the highly variable V1 region interferes with Human Immunodeficiency Virus type 1 envelope functionality, Retrovirology 2013;10:114.
• 2013
  Simon-Loriere E, Holmes EC, Pagán I, The effect of gene overlapping on the rate of RNA virus evolution, Mol. Biol. Evol. 2013 Aug;30(8):1916-28.
• 2013
  Simon-Loriere E, Holmes EC, Gene duplication is infrequent in the recent evolutionary history of RNA viruses, Mol. Biol. Evol. 2013 Jun;30(6):1263-9.
• 2012
  Rossolillo P, Winter F, Simon-Loriere E, Gallois-Montbrun S, Negroni M, Retrovolution: HIV-driven evolution of cellular genes and improvement of anticancer drug activation, PLoS Genet. 2012 Aug;8(8):e1002904.
• 2012
  Pagán I, Holmes EC, Simon-Loriere E, Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales, J. Virol. 2012 May;86(9):5253-63.
• 2011
  Simon-Loriere E, Holmes EC, Why do RNA viruses recombine?, Nat. Rev. Microbiol. 2011 Aug;9(8):617-26.
• 2011
  Simon-Loriere E, Rossolillo P, Negroni M, RNA structures, genomic organization and selection of recombinant HIV, RNA Biol 2011 Mar-Apr;8(2):280-6.
• 2010
  Simon-Loriere E, Martin DP, Weeks KM, Negroni M, RNA structures facilitate recombination-mediated gene swapping in HIV-1, J. Virol. 2010 Dec;84(24):12675-82.
• 2009
  Simon-Loriere E, Galetto R, Hamoudi M, Archer J, Lefeuvre P, Martin DP, Robertson DL, Negroni M, Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus, PLoS Pathog. 2009 May;5(5):e1000418.
• 2008
  Archer J, Pinney JW, Fan J, Simon-Loriere E, Arts EJ, Negroni M, Robertson DL, Identifying the important HIV-1 recombination breakpoints, PLoS Comput. Biol. 2008;4(9):e1000178.
• 2008
  Ramirez BC, Simon-Loriere E, Galetto R, Negroni M, Implications of recombination for HIV diversity, Virus Res. 2008 Jun;134(1-2):64-73.
• 2006
  Baird HA, Galetto R, Gao Y, Simon-Loriere E, Abreha M, Archer J, Fan J, Robertson DL, Arts EJ, Negroni M, Sequence determinants of breakpoint location during HIV-1 intersubtype recombination, Nucleic Acids Res. 2006;34(18):5203-16.