-
2024A virally-encoded tRNA neutralizes the PARIS antiviral defence system., Nature 2024 Aug; (): .
-
2024Epigenomics coverage data extraction and aggregation in R with tidyCoverage., Bioinformatics 2024 Aug; 40(8): .
-
2024Chromosome-level genome assembly of the European green woodpecker Picus viridis., G3 (Bethesda) 2024 Mar; (): .
-
2024Sister chromatid cohesion halts DNA loop expansion., Mol Cell 2024 Mar; 84(6): 1139-1148.e5.
-
2024Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri., Proc Natl Acad Sci U S A 2024 Mar; 121(12): e2312820121.
-
2024Orchestrating chromosome conformation capture analysis with Bioconductor., Nat Commun 2024 Feb; 15(1): 1072.
-
2024Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes., Nat Struct Mol Biol 2024 Jan; (): .
-
2023Design, construction, and functional characterization of a tRNA neochromosome in yeast., Cell 2023 Nov; 186(24): 5237-5253.e22.
-
2023Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function., Cell Genom 2023 Nov; 3(11): 100439.
-
2023Insights in bacterial genome folding., Curr Opin Struct Biol 2023 Oct; 82(): 102679.
-
2023Neuroinvasion and anosmia are independent phenomena upon infection with SARS-CoV-2 and its variants., Nat Commun 2023 Jul; 14(1): 4485.
-
2023Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria., Microbiome 2023 May; 11(1): 111.
-
2022Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture., Evol Appl 2022 Nov; 15(11): 1730-1748.
-
2022Depletion or cleavage of cohesin during anaphase differentially affects chromatin structure and segregation., Elife 2022 Oct; 11(): .
-
2022Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection-related chromatin reorganization., Genome Res 2022 Sep; (): .
-
2022Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts., Cell Genom 2022 Aug; 2(8): None.
-
2022Smc3 acetylation, Pds5 and Scc2 control the translocase activity that establishes cohesin-dependent chromatin loops., Nat Struct Mol Biol 2022 Jun; 29(6): 575-585.
-
2022Extended sister-chromosome catenation leads to massive reorganization of the E. coli genome., Nucleic Acids Res 2022 03; 50(5): 2635-2650.
-
2022Crosstalk between Hepatitis B Virus and the 3D Genome Structure., Viruses 2022 02; 14(2): .
-
2022Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization., Methods Mol Biol 2022 ; 2301(): 1-15.
-
2022Metagenomes Binning Using Proximity-Ligation Data., Methods Mol Biol 2022 ; 2301(): 163-181.
-
2021Cohesin regulates homology search during recombinational DNA repair., Nat Cell Biol 2021 Nov; 23(11): 1176-1186.
-
2021Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga., Sci Adv 2021 Oct; 7(41): eabg4216.
-
2021Generation of gene-level resolution chromosome contact maps in bacteria and archaea., STAR Protoc 2021 Jun; 2(2): 100512.
-
2021Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community., Microbiol Resour Announc 2021 Apr; 10(17): .
-
2021MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut., Elife 2021 Feb; 10(): .
-
2021Sir3 mediates long-range chromosome interactions in budding yeast., Genome Res 2021 Feb; (): .
-
2021Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization., Commun Biol 2021 Jan; 4(1): 104.
-
2020Euryarchaeal genomes are folded into SMC-dependent loops and domains, but lack transcription-mediated compartmentalization., Mol Cell 2021 02; 81(3): 459-472.e10.
-
2020Computer vision for pattern detection in chromosome contact maps., Nat Commun 2020 11; 11(1): 5795.
-
2020instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder., Genome Biol 2020 06; 21(1): 148.
-
2020Serpentine: a flexible 2D binning method for differential Hi-C analysis., Bioinformatics 2020 Jun; 36(12): 3645-3651.
-
2020Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum., Nat Commun 2020 Mar; 11(1): 1485.
-
2020Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners, Mol. Cell 2020 Jan;.
-
2019Perspectives on Chromosome Organization, J. Mol. Biol. 2019 Dec;.
-
2019FACT mediates cohesin function on chromatin, Nat. Struct. Mol. Biol. 2019 Oct;26(10):970-979.
-
2019MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries, Front Genet 2019;10:753.
-
2019Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis, Mol. Cell 2019 07;75(1):131-144.e3.
-
2019Dynamic Processing of Displacement Loops during Recombinational DNA Repair, Mol. Cell 2019 03;73(6):1255-1266.e4.
-
2018Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin., Nat Commun 2018 Oct; 9(1): 4268.
-
2018Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota, Meth. Enzymol. 2018;612:183-195.
-
2018Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer, Phys. Rev. Lett. 2018 Aug;121(5):057801.
-
2018Characterizing meiotic chromosomes’ structure and pairing using a designer sequence optimized for Hi-C, Mol. Syst. Biol. 2018 07;14(7):e8293.
-
2018A Proximity Ligation-Based Method for Quantitative Measurement of D-Loop Extension in S. cerevisiae, Meth. Enzymol. 2018;601:27-44.
-
2018Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins, Cell 2018 Jan;.
-
2017Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle, EMBO J. 2017 09;36(18):2684-2697.
-
2017Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes, Biotechnol Biofuels 2017;10:151.
-
20173D organization of synthetic and scrambled chromosomes, Science 2017 03;355(6329).
-
2017Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome, Science 2017 Mar;355(6329).
-
2017Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay, Sci Adv 2017 Feb;3(2):e1602105.
-
2017Generation and Analysis of Chromosomal Contact Maps of Bacteria, Methods Mol. Biol. 2017;1624:75-84.
-
2016Beyond the bounds of evolution: Synthetic chromosomes… How and what for?, C. R. Biol. 2016 Jun;.
-
2016A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae., Sci Adv 2016 Apr; 2(4): e1501914.
-
2016Evidence for actin dual role in regulating chromosome organization and dynamics in yeast, J Cell Sci 2016 : doi: 10.1242/jcs.175745.
-
2016Generation and Analysis of Chromosomal Contact Maps of Yeast Species, Methods Mol Biol. 2016;1361:227-45.
-
2015The 3D folding of metazoan genomes correlates with the association of similar repetitive elements, Nucleic Acids Res. 2015 Nov;.
-
2015Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data, Trends Genet. 2015 Nov;.
-
2015Conception et synthèse de néochromosomes, 2015;17(4):228-236. doi:10.1684/mte.2015.0574.
-
2015Spatial reorganization of telomeres in long-lived quiescent cells., Genome Biol 2015 Sep; 16(1): 206.
-
2015Genome-wide replication landscape of Candida glabrata, BMC Biol. 2015 Sep;13:69.
-
2015Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution, Genome Biol. 2015;16(1):169.
-
2015Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures, FEBS Lett. 2015 Apr;.
-
2015Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging, Mol. Cell 2015 Aug;59(4):588-602.
-
2014High-quality genome (re)assembly using chromosomal contact data., Nat Commun 2014 Dec; 5(): 5695.
-
2014Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms, Elife 2014;3:e03318.
-
2014Gateway to genetic exchange? DNA double-strand breaks in the bdelloid rotifer Adineta vaga submitted to desiccation, J. Evol. Biol. 2014 Jul;27(7):1334-45.
-
2014Filling annotation gaps in yeast genomes using genome-wide contact maps., Bioinformatics 2014 Aug; 30(15): 2105-13.
-
2014Total synthesis of a functional designer eukaryotic chromosome, Science 2014 Apr;344(6179):55-8.
-
2014Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure, Yeast 2014 May;31(5):159-66.
-
2013Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga, Nature 2013 Aug;500(7463):453-7.
-
2012A predictive computational model of the dynamic 3D interphase yeast nucleus, Curr. Biol. 2012 Oct;22(20):1881-90.
-
2012Normalization of a chromosomal contact map, BMC Genomics 2012;13:436.
-
2012The chiasmatype theory. A new interpretation of the maturation divisions. 1909, Genetics 2012 Jun;191(2):319-46.
-
2012The centenary of Janssens’s chiasmatype theory, Genetics 2012 Jun;191(2):309-17.
-
2009Dynamic chromosome movements during meiosis: a way to eliminate unwanted connections?, Trends Cell Biol. 2009 Dec;19(12):716-24.
-
2009Real-time imaging of meiotic chromosomes in Saccharomyces cerevisiae, Methods Mol. Biol. 2009;558:81-9.
-
2008A prominent role for segmental duplications in modeling eukaryotic genomes, C. R. Biol. 2009 Feb-Mar;332(2-3):254-66.
-
2008Csm4, in collaboration with Ndj1, mediates telomere-led chromosome dynamics and recombination during yeast meiosis, PLoS Genet. 2008;4(9):e1000188.
-
2008Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms, PLoS Genet. 2008;4(9):e1000175.
-
2008Meiotic chromosomes move by linkage to dynamic actin cables with transduction of force through the nuclear envelope, Cell 2008 Jun;133(7):1188-201.
-
2006Stability of large segmental duplications in the yeast genome, Genetics 2006 Apr;172(4):2211-22.
-
2004Genome evolution in yeasts, Nature 2004 Jul;430(6995):35-44.
-
2004Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae., Genome Biol 2004 ; 5(9): R72.
-
2003Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments, EMBO J. 2004 Jan;23(1):234-43.
-
2003The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata, FEBS Lett. 2003 Jan;534(1-3):39-48.