• 2025
  , Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems, Science, 388, 6747, (2025)..
• 2025
  Darracq B, Littner E, Brunie M, Bos J, Kaminski PA, Depardieu F, Slesak W, Debatisse K, Touchon M, Bernheim A, Bikard D, Le Roux F, Mazel D, Rocha EPC, Loot C, Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems., Science, 2025 May; 388(6747): eads0768.
• 2025
  Vaysset H, Meers C, Cury J, Bernheim A, Sternberg SH, Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons., Nat Microbiol 2025 Jan; (): .
• 2024
  Tesson F, Huiting E, Wei L, Ren J, Johnson M, Planel R, Cury J, Feng Y, Bondy-Denomy J, Bernheim A, Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements., Nucleic Acids Res 2024 Dec; (): .
• 2024
  Gaborieau B, Vaysset H, Tesson F, Charachon I, Dib N, Bernier J, Dequidt T, Georjon H, Clermont O, Hersen P, Debarbieux L, Ricard JD, Denamur E, Bernheim A, Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information., Nat Microbiol 2024 Nov; 9(11): 2847-2861.
• 2024
  Cury J, Haudiquet M, Hernandez Trejo V, Mordret E, Hanouna A, Rotival M, Tesson F, Bonhomme D, Ofir G, Quintana-Murci L, Benaroch P, Poirier EZ, Bernheim A, Conservation of antiviral systems across domains of life reveals immune genes in humans., Cell Host Microbe 2024 Aug; (): .
• 2024
  Tesson F, Huiting E, Wei L, Ren J, Johnson MC, Planel R, Cury J, Feng Y, Bondy-Denomy J, Bernheim A, Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements., bioRxiv 2024 Aug; (): .
• 2024
  Burman N, Belukhina S, Depardieu F, Wilkinson RA, Skutel M, Santiago-Frangos A, Graham AB, Livenskyi A, Chechenina A, Morozova N, Zahl T, Henriques WS, Buyukyoruk M, Rouillon C, Saudemont B, Shyrokova L, Kurata T, Hauryliuk V, Severinov K, Groseille J, Thierry A, Koszul R, Tesson F, Bernheim A, Bikard D, Wiedenheft B, Isaev A, A virally-encoded tRNA neutralizes the PARIS antiviral defence system., Nature 2024 Aug; (): .
• 2024
  Shomar H, Georjon H, Feng Y, Olympio B, Guillaume M, Tesson F, Cury J, Wu F, Bernheim A, Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold., Nat Ecol Evol 2024 Jul; (): .
• 2024
  Bernheim A, Cury J, Poirier EZ, The immune modules conserved across the tree of life: Towards a definition of ancestral immunity., PLoS Biol 2024 Jul; 22(7): e3002717.
• 2024
  Vaysset H, Meers C, Cury J, Bernheim A, Sternberg SH, Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons., bioRxiv 2024 Jun; (): .
• 2024
  F. Tesson, R. Planel, A. Egorov, H. Georjon, H. Vaysset, B. Brancotte, B. Néron, E. Mordret, G. Atkinson, A Bernheim, J. Cury, A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases, 2024.
• 2023
  Aël Hardy, Helena Shomar, Aude Bernheim, Immunité bactérienne : à la découverte d’un nouveau monde [Bacterial immunity: Uncovering a new world], Médecine/Sciences, 2023, 39 (11), pp.862-868. ⟨10.1051/medsci/2023163⟩.
• 2023
  Georjon H, Bernheim A, The highly diverse antiphage defence systems of bacteria., Nat Rev Microbiol 2023 Oct; 21(10): 686-700.
• 2023
  Georjon H, Tesson F, Shomar H, Bernheim A, Genomic characterization of the antiviral arsenal of Actinobacteria., Microbiology (Reading) 2023 Aug; 169(8): .
• 2023
  Tesson F, Bernheim A, Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system?, Curr Opin Microbiol 2023 Feb; 71(): 102238.
• 2022
  Millman A, Melamed S, Leavitt A, Doron S, Bernheim A, Hör J, Garb J, Bechon N, Brandis A, Lopatina A, Ofir G, Hochhauser D, Stokar-Avihail A, Tal N, Sharir S, Voichek M, Erez Z, Ferrer JLM, Dar D, Kacen A, Amitai G, Sorek R, An expanded arsenal of immune systems that protect bacteria from phages., Cell Host Microbe 2022 Nov; 30(11): 1556-1569.e5.
• 2022
  Garb J, Lopatina A, Bernheim A, Zaremba M, Siksnys V, Melamed S, Leavitt A, Millman A, Amitai G, Sorek R, , Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion., Nat Microbiol 2022 Nov; 7(11): 1849-1856.
• 2022
  Cury J, Bernheim A, CRISPR-Cas and restriction-modification team up to achieve long-term immunity., Trends Microbiol 2022 Jun; 30(6): 513-514.
• 2022
  Rousset F, Depardieu F, Miele S, Dowding J, Laval AL, Lieberman E, Garry D, Rocha EPC, Bernheim A, Bikard D, Phages and their satellites encode hotspots of antiviral systems., Cell Host Microbe 2022 May; 30(5): 740-753.e5.
• 2022
  Tesson F, Hervé A, Mordret E, Touchon M, d'Humières C, Cury J, Bernheim A, Systematic and quantitative view of the antiviral arsenal of prokaryotes., Nat Commun 2022 May; 13(1): 2561.
• 2022
  Klompe SE, Jaber N, Beh LY, Mohabir JT, Bernheim A, Sternberg SH, Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons., Mol Cell 2022 Feb; 82(3): 616-628.e5.
• 2022
  Florian Tesson, Alexandre Hervé, Ernest Mordret, Marie Touchon, Camille D’humières, Jean Cury, Aude Bernheim, Systematic and quantitative view of the antiviral arsenal of prokaryotes, Nature Communications, 2022, 13 (1), pp.2561. ⟨10.1038/s41467-022-30269-9⟩.
• 2021
  Bernheim A, Millman A, Ofir G, Meitav G, Avraham C, Shomar H, Rosenberg MM, Tal N, Melamed S, Amitai G, Sorek R, , Prokaryotic viperins produce diverse antiviral molecules., Nature 2021 Jan; 589(7840): 120-124.
• 2020
  Millman A, Bernheim A, Stokar-Avihail A, Fedorenko T, Voichek M, Leavitt A, Oppenheimer-Shaanan Y, Sorek R, , Bacterial Retrons Function In Anti-Phage Defense., Cell 2020 Dec; 183(6): 1551-1561.e12.
• 2020
  Bernheim A, Sorek R, , The pan-immune system of bacteria: antiviral defence as a community resource., Nat Rev Microbiol 2020 Feb; 18(2): 113-119.
• 2018
  Bernheim A, Sorek R, , Viruses cooperate to defeat bacteria., Nature 2018 Jul; 559(7715): 482-484.