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2021Host genetic control of natural killer cell diversity revealed in the Collaborative Cross., Proc Natl Acad Sci U S A 2021 03; 118(10): .
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2020Immune response profiling of patients with spondyloarthritis reveals signalling networks mediating TNF-blocker function in vivo., Ann Rheum Dis 2020 Dec; (): .
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2020Influenza A virus co-opts ERI1 exonuclease bound to histone mRNA to promote viral transcription., Nucleic Acids Res. 2020 Sep; (): .
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2020Phenanthrolinic analogs of quinolones show antibacterial activity against M. tuberculosis., Eur J Med Chem 2020 Sep; 207(): 112821.
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2020Targeting Macrophage Histone H3 Modification as a Leishmania Strategy to Dampen the NF-κB/NLRP3-Mediated Inflammatory Response., Cell Rep 2020 02; 30(6): 1870-1882.e4.
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2019Adjusting for Principal Components of Molecular Phenotypes Induces Replicating False Positives., Genetics 2019 04; 211(4): 1179-1189.
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2019Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus, Viruses 2019 03;11(3).
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2019The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells, Nat Commun 2019 03;10(1):1109.
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2019Immune parameters and outcomes during Ebola virus disease, JCI Insight 2019 Jan;4(1).
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2018A strategy for multimodal data integration: application to biomarkers identification in spinocerebellar ataxia., Brief Bioinform 2018 11; 19(6): 1356-1369.
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2018Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells, PLoS Pathog. 2018 11;14(11):e1007430.
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2018Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification., mBio 2018 11; 9(6): .
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2018Continuation of Nesterov’s Smoothing for Regression With Structured Sparsity in High-Dimensional Neuroimaging., IEEE Trans Med Imaging 2018 11; 37(11): 2403-2413.
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2018Proteomics reveals scope of mycolactone-mediated Sec61 blockade and distinctive stress signature, Mol. Cell Proteomics 2018 Jun;.
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2017Adaptive human immunity drives remyelination in a mouse model of demyelination., Brain 2017 Apr; 140(4): 967-980.
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2016Clinical-genetic model predicts incident impulse control disorders in Parkinson’s disease., J Neurol Neurosurg Psychiatry 2016 Oct; 87(10): 1106-11.
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2016Intron retention-dependent gene regulation in Cryptococcus neoformans, Sci Rep 2016 08;6:32252.
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2016DNA minicircles clarify the specific role of DNA structure on retroviral integration, Nucleic Acids Res. 2016 Jul;.
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2016Transcriptome Analysis of Peripheral Blood in Chronic Inflammatory Demyelinating Polyradiculoneuropathy Patients Identifies TNFR1 and TLR Pathways in the IVIg Response., Medicine (Baltimore) 2016 May; 95(19): e3370.
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2015Hypomorphic variants of cationic amino acid transporter 3 in males with autism spectrum disorders., Amino Acids 2015 Dec; 47(12): 2647-58.
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2015Single-voxel (1)H spectroscopy in the human hippocampus at 3 T using the LASER sequence: characterization of neurochemical profile and reproducibility., NMR Biomed 2015 Oct; 28(10): 1209-17.
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2015CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis, J. Mol. Cell. Cardiol. 2015 Dec;89(Pt A):98-112.
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2015A 12-gene signature to distinguish colon cancer patients with better clinical outcome following treatment with 5-fluorouracil or FOLFIRI, J Pathol Clin Res 2015 Jul;1(3):160-72.
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2015Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing, Nat. Methods 2015 Apr;12(4):339-42.
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2015Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression, Nat Commun 2015 Jan;6:5903.
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2014Principles of regulatory information conservation between mouse and human, Nature 2014 Nov;515(7527):371-375.
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2014A comparative encyclopedia of DNA elements in the mouse genome, Nature 2014 Nov;515(7527):355-64.
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2014Variable selection for generalized canonical correlation analysis., Biostatistics 2014 Jul; 15(3): 569-83.
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2014SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments, Nucleic Acids Res. 2014 Jul;42(Web Server issue):W356-60.
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2013Detecting and comparing non-coding RNAs in the high-throughput era, Int J Mol Sci 2013 Jul;14(8):15423-58.
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2013Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package, Bioinformatics 2013 May;29(9):1112-9.
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2013Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints., PLoS One 2013 ; 8(4): e60536.
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2012Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares., Neuroimage 2012 Oct; 63(1): 11-24.
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2012An integrated encyclopedia of DNA elements in the human genome, Nature 2012 Sep;489(7414):57-74.
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2012The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression, Genome Res. 2012 Sep;22(9):1775-89.
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2012Use of ChIP-Seq data for the design of a multiple promoter-alignment method, Nucleic Acids Res. 2012 Apr;40(7):e52.
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2011Exploring the gonad transcriptome of two extreme male pigs with RNA-seq, BMC Genomics 2011 Nov;12:552.
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2011Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures, Nat Protoc 2011 Nov;6(11):1669-82.
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2011Use of pretransformation to cope with extreme values in important candidate features., Biom J 2011 Jul; 53(4): 673-88.
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2011BlastR–fast and accurate database searches for non-coding RNAs, Nucleic Acids Res. 2011 Sep;39(16):6886-95.
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2011Graph constrained discriminant analysis: a new method for the integration of a graph into a classification process., PLoS One 2011 ; 6(10): e26146.
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2010Distance between homologous chromosomes results from chromosome positioning constraints., J Cell Sci 2010 Dec; 123(Pt 23): 4063-75.
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2010Long noncoding RNAs with enhancer-like function in human cells, Cell 2010 Oct;143(1):46-58.
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2010Over-optimism in bioinformatics: an illustration., Bioinformatics 2010 Aug; 26(16): 1990-8.
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2010A novel, noncanonical mechanism of cytoplasmic polyadenylation operates in Drosophila embryogenesis, Genes Dev. 2010 Jan;24(2):129-34.
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2008The MoVIN server for the analysis of protein interaction networks, BMC Bioinformatics 2008 Mar;9 Suppl 2:S11.