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Oxford Nanopore sequencing for detection and surveillance of pathogens
Sylvain Brisse (PI)
This project intends to share expertise, developments, equipement and bioinformatics tools to apply Oxford Nanopore Technology sequencing to the detection, diagnostic and characterization of pathogens of public health importance. It corresponds to a collaboration […]
PhD in Sciences – Translational Medicine, Universidade Federal de São Paulo (UNIFESP), São Paulo, Brazil. Title of the Thesis: Molecular characterization of polymyxin resistance mechanisms among multidrug resistant Acinetobacter baumannii. Advisor: Ana Cristina Gales. Apr/2016-May/2020.
Master in Pharmaceutical Sciences, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil. Title of the Dissertation: Resistome analysis of carbapenemase-producing Enterobacteriaceae using Next-Generation Sequencing. Advisor: Afonso Luís Barth. Apr/2014-Mar/2016.
Bachelor’s in Pharmacy, UFRGS, Porto Alegre, Brazil. Project title: Frequency of imipenem heteroresistance among KPC-producing Enterobacteriaceae. Advisor: Afonso Luís Barth. Mar/2008-Dec/2013.
Co-advisor of the master’s dissertation of Felipe Alberto Lei, at the Federal University of São Paulo. Research topic: Diversity of carbapenemases among clinical isolates belonging to Pseudomonas putida group. Advisor: Ana Cristina Gales. Aug/2018-Dec/2020.
Co-advisor of the bachelor’s final project of Larissa Akie Natsumeda, at the Federal University of São Paulo. Research topic: Azithromycin resistance mechanisms among Neisseria gonorrhoeae clinical isolates. Advisor: Ana Cristina Gales. Mar/2018-Dec/2018.
Co-advisor of the bachelor’s final project of Lisiane Rech Pancotto, at the Federal University of Rio Grande do Sul. Research topic: Rapid phenotypic detection of carbapenemases among Enterobacteriaceae clinical isolates. Advisor: Afonso Luís Barth. Mar/2015-Dec/2015.
Assistant professor in the Clinical Bacteriology course, offered to Pharmacy students at the Federal University of Rio Grande do Sul. Teaching hours: 30 hours. Aug-Dec/2014.
In the last 3 years (2020-2022): 13
Total citations: 233 (as of 12.04.22, on Google Scholar)
Conference poster and oral presentations
In the last 3 years (2019-2021): 19
Presenting author: 11
Member of editorial board
German Journal of Microbiology (since 2021)
Frontiers in Microbiology (since 2022)
Memórias do Instituto Oswaldo Cruz (since 2022)
Biomedicine & Pharmacotherapy (since 2021)
Gene Reports (since 2021)
Frontiers in Cellular in Infection Microbiology (since 2021)
Microbial Pathogenesis (since 2021)
Journal of Microbiological Methods (since 2021)
Access Microbiology (since 2020)
Revista do Instituto de Medicina Tropical de São Paulo (since 2020)
Journal of Chemotherapy (since 2020)
Journal of Hospital Infection (since 2020)
Microbial Drug Resistance (since 2020)
Brazilian Journal of Microbiology (since 2020)
Medical Microbiology and Immunology (since 2019)
mSphere (since 2019)
Canadian Journal of Infectious Diseases & Medical Microbiology (since 2019)
Antimicrobial Agents and Chemotherapy (since 2019)
Journal of Medical Microbiology (since 2018)
Journal of Antimicrobial Chemotherapy (since 2018)
Journal of Global Antimicrobial Resistance (since 2017)
The Brazilian Journal of Infectious Diseases (since 2016)
2023Genetic and biochemical characterization of BIM-1, a novel acquired subgroup B1 MBL found in a Pseudomonas sp. strain from the Brazilian Amazon region., J Antimicrob Chemother 2023 Apr; (): .
2023Editorial: Mobile genetic elements as dissemination drivers of multidrug-resistant Gram-negative bacteria., Front Cell Infect Microbiol 2023 ; 13(): 1180510.
2022Characterization of a Carbapenem-Resistant BKC-1-Producing Clinical Isolate Belonging to the Pseudomonas putida Group from Brazil., Antimicrob Agents Chemother 2022 Nov; (): e0083922.
2022Unravelling complex transposable elements surrounding blaGES-16 in a Pseudomonas aeruginosa ExoU strain., J Glob Antimicrob Resist 2022 09; 30(): 143-147.
2022Kinetics Analysis of β-Lactams Hydrolysis by OXA-50 Variants of Pseudomonas aeruginosa., Microb Drug Resist 2022 Aug; 28(8): 849-852.
2022Genomic analyses of ciprofloxacin-resistant Neisseria gonorrhoeae isolates recovered from the largest South American metropolitan area., Genomics 2022 03; 114(2): 110287.
2022Spread of multidrug-resistant Acinetobacter baumannii isolates belonging to IC1 and IC5 major clones in Rondônia state., Braz J Microbiol 2022 Feb; (): .
2021pmrCAB Recombination Events among Colistin-Susceptible and -Resistant Acinetobacter baumannii Clinical Isolates Belonging to International Clone 7., mSphere 2021 Dec; 6(6): e0074621.
2021Genomic analysis of carbapenem-resistant Pseudomonas aeruginosa ST143 clone showing susceptibility to broad-spectrum cephalosporins., J Glob Antimicrob Resist 2021 09; 26(): 177-179.
2021In vitro activity of sulbactam/durlobactam against extensively drug-resistant Acinetobacter baumannii isolates belonging to South American major clones., J Glob Antimicrob Resist 2021 06; 25(): 363-366.
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