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© Research
Publication : International Conference on Data Integration in the Life Sciences

Conqur-bio: Consensus ranking with query reformulation for biological data

Scientific Fields
Diseases
Organisms
Applications
Technique

Published in International Conference on Data Integration in the Life Sciences - 17 Jul 2014

International Conference on Data Integration in the Life Sciences

DILS 2014

Abstract This paper introduces ConQuR-Bio which aims at assisting scientists when they query public biological databases. Various reformulations of the user query are generated using medical terminologies. Such alternative reformulations are then used to rank the query results using a new consensus ranking strategy. The originality of our approach thus lies in using consensus ranking techniques within the context of query reformulation. The ConQuR-Bio system is able to query the EntrezGene NCBI database. Our experiments demonstrate the benefit of using ConQuR-Bio compared to what is currently provided to users. ConQuR-Bio is available to the bioinformatics community at http://conqur-bio. lri. fr.

https://hal.inria.fr/hal-01091053/document