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© Michaela Muller-Trutwin
HIV
Publication : Epigenomics

Analysis and annotation of DNA methylation in two nonhuman primate species using the Infinium Human Methylation 450K and EPIC BeadChips.

Team: HIV, Inflammation and Persistence
Member: Michaela Muller-Trutwin
Member: Béatrice Jacquelin
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Epigenomics - 01 Feb 2021

Pichon F, Shen Y, Busato F, P Jochems S, Jacquelin B, Grand RL, Deleuze JF, Müller-Trutwin M, Tost J,

Link to Pubmed [PMID] – 33471557

Link to DOI – 10.2217/epi-2020-0200

Epigenomics 2021 02; 13(3): 169-186

Aim: Nonhuman primates are essential for research on many human diseases. The Infinium Human Methylation450/EPIC BeadChips are popular tools for the study of the methylation state across the human genome at affordable cost. Methods: We performed a precise evaluation and re-annotation of the BeadChip probes for the analysis of genome-wide DNA methylation patterns in rhesus macaques and African green monkeys through in silico analyses combined with functional validation by pyrosequencing. Results: Up to 165,847 of the 450K and 261,545 probes of the EPIC BeadChip can be reliably used. The annotation files are provided in a format compatible with a variety of standard bioinformatic pipelines. Conclusion: Our study will facilitate high-throughput DNA methylation analyses in Macaca mulatta and Chlorocebus sabaeus.