• 2024
  Bratuleanu BE, Chretien D, Bigot T, Regnault B, Pérot P, Savuta G, Eloit M, Temmam S, Insights into the virome of Hyalomma marginatum in the Danube Delta: a major vector of Crimean-Congo hemorrhagic fever virus in Eastern Europe., Parasit Vectors 2024 Nov; 17(1): 482.
• 2024
  Fourgeaud J, Regnault B, Ok V, Da Rocha N, Sitterlé É, Mekouar M, Faury H, Milliancourt-Seels C, Jagorel F, Chrétien D, Bigot T, Troadec É, Marques I, Serris A, Seilhean D, Neven B, Frange P, Ferroni A, Lecuit M, Nassif X, Lortholary O, Leruez-Ville M, Pérot P, Eloit M, Jamet A, Performance of clinical metagenomics in France: a prospective observational study., Lancet Microbe 2024 Jan; 5(1): e52-e61.
• 2023
  Bianca Elena Bratuleanu, Cristian Răileanu, Amal Bennouna, Delphine Chretien, Thomas Bigot, Pablo Guardado-Calvo, Gheorghe Savuta, Sara Moutailler, Marc Eloit, Sarah Temmam, Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses, Transboundary and emerging diseases, 2023, 2023, pp.1-14. ⟨10.1155/2023/6661723⟩.
• 2023
  Temmam S, Tu TC, Regnault B, Bonomi M, Chrétien D, Vendramini L, Duong TN, Phong TV, Yen NT, Anh HN, Son TH, Anh PT, Amara F, Bigot T, Munier S, Thong VD, van der Werf S, Nam VS, Eloit M, Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence., Viruses 2023 Sep; 15(9): .
• 2023
  Amal Bennouna, Michael Luciano Tantely, Vololoniaina Raharinosy, Soa Fy Andriamandimby, Thomas Bigot, Delphine Chrétien, Elise Jacquemet, Stevenn Volant, Sarah Temmam, Philippe Dussart, Vincent Lacoste, Romain Girod, Marc Eloit, Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar, Viruses, 2023, 15 (9), pp.1852. ⟨10.3390/v15091852⟩.
• 2023
  Julia Kende, Massimiliano Bonomi, Sarah Temmam, Béatrice Regnault, Philippe Pérot, Marc Eloit, Thomas Bigot, Virus Pop—Expanding Viral Databases by Protein Sequence Simulation, Viruses, 2023, 15 (6), pp.1227. ⟨10.3390/v15061227⟩.
• 2023
  Sarah Temmam, Xavier Montagutelli, Cécile Herate, Flora Donati, Béatrice Regnault, Mikael Attia, Eduard Baquero Salazar, Delphine Chretien, Laurine Conquet, Grégory Jouvion, Juliana Pipoli da Fonseca, Thomas Cokelaer, Faustine Amara, Francis Relouzat, Thibaut Naninck, Julien Lemaitre, Nathalie Derreudre-Bosquet, Quentin Pascal, Massimiliano Bonomi, Thomas Bigot, Sandie Munier, Felix Rey, Roger Le Grand, Sylvie van der Werf, Marc Eloit, SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19, EMBO Reports, 2023, 24 (4), pp.e56055. ⟨10.15252/embr.202256055⟩.
• 2023
  Bianca Elena Bratuleanu, Cristian Raileanu, Delphine Chrétien, Pablo Guardado-Calvo, Thomas Bigot, Gheorghe Savuta, Sarah Temmam, Marc Eloit, A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep, Microorganisms, 2023, 11 (1), pp.209. ⟨10.3390/microorganisms11010209⟩.
• 2022
  Pérot P, Bigot T, Temmam S, Regnault B, Eloit M, Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery., Viruses 2022 Sep; 14(9): .
• 2022
  Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero, Sandie Munier, Massimiliano Bonomi, Béatrice Regnault, Bounsavane Douangboubpha, Yasaman Karami, Delphine Chrétien, Daosavanh Sanamxay, Vilakhan Xayaphet, Phetphoumin Paphaphanh, Vincent Lacoste, Somphavanh Somlor, Khaithong Lakeomany, Nothasin Phommavanh, Philippe Pérot, Océane Dehan, Faustine Amara, Flora Donati, Thomas Bigot, Michael Nilges, Félix Rey, Sylvie van Der Werf, Paul Brey, Marc Eloit, Bat coronaviruses related to SARS-CoV-2 and infectious for human cells, Nature, 2022, 604 (7905), pp.330-336. ⟨10.1038/s41586-022-04532-4⟩.
• 2022
  Bratuleanu BE, Temmam S, Munier S, Chrétien D, Bigot T, van der Werf S, Savuta G, Eloit M, Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta., Front Vet Sci 2022 ; 9(): 863814.
• 2021
  Philippe Perot, Franck Bielle, Thomas Bigot, Vincent Foulongne, Karine Bolloré, Delphine Chrétien, Patricia Gil, Serafin Gutierrez, Grégory L’ambert, Karima Mokhtari, Jan Hellert, Marie Flamand, Carole Tamietti, Muriel Coulpier, Anne Huard de Verneuil, Sarah Temmam, Thérèse Couderc, Edouard de Sousa Cunha, Susana Boluda, Isabelle Plu, Marie Bernadette Delisle, Fabrice Bonneville, David Brassat, Claire Fieschi, Marion Malphettes, Charles Duyckaerts, Bertrand Mathon, Sophie Demeret, Danielle Seilhean, Marc Eloit, Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia, Clinical Infectious Diseases, 2021, 72 (10), pp.1701-1708. ⟨10.1093/cid/ciaa308⟩.
• 2021
  Bratuleanu BE, Temmam S, Chrétien D, Regnault B, Pérot P, Bouchier C, Bigot T, Savuța G, Eloit M, The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health., Transbound Emerg Dis 2022 May; 69(3): 1387-1403.
• 2021
  Sermet-Gaudelus I, Temmam S, Huon C, Behillil S, Gajdos V, Bigot T, Lurier T, Chrétien D, Backovic M, Delaunay-Moisan A, Donati F, Albert M, Foucaud E, Mesplées B, Benoist G, Faye A, Duval-Arnould M, Cretolle C, Charbit M, Aubart M, Auriau J, Lorrot M, Kariyawasam D, Fertitta L, Orliaguet G, Pigneur B, Bader-Meunier B, Briand C, Enouf V, Toubiana J, Guilleminot T, van der Werf S, Leruez-Ville M, Eloit M, Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020., Euro Surveill 2021 Apr; 26(13): .
• 2021
  Arnaud Fontanet, Laura Tondeur, Rebecca Grant, Sarah Temmam, Yoann Madec, Thomas Bigot, Ludivine Grzelak, Isabelle Cailleau, Camille Besombes, Marie-Noëlle Ungeheuer, Charlotte Renaudat, Blanca Liliana Perlaza, Laurence Arowas, Nathalie Jolly, Sandrine Fernandes Pellerin, Lucie Kuhmel, Isabelle Staropoli, Christèle Huon, Kuang-Yu Chen, Bernadette Crescenzo-Chaigne, Sandie Munier, Pierre Charneau, Caroline Demeret, Timothée Bruel, Marc Eloit, Olivier Schwartz, Bruno Hoen, SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020, Eurosurveillance, 2021, 26 (15), pp.2001695. ⟨10.2807/1560-7917.es.2021.26.15.2001695⟩.
• 2021
  Béatrice Regnault, Thomas Bigot, Laurence Ma, Philippe Pérot, Sarah Temmam, Marc Eloit, Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results, Viruses, 2021, 13 (2), pp.253. ⟨10.3390/v13020253⟩.
• 2020
  Sarah Temmam, Vibol Hul, Thomas Bigot, Mael Bessaud, Delphine Chrétien, Thavry Hoem, Christopher Gorman, Veasna Duong, Philippe Dussart, Julien Cappelle, Marc Eloit, Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization, Infection, Genetics and Evolution, 2020, 78, 5 p. ⟨10.1016/j.meegid.2019.104130⟩.
• 2020
  Lotty Birnberg, Sarah Temmam, Carles Aranda, Florencia Correa-Fiz, Sandra Talavera, Thomas Bigot, Marc Eloit, Núria Busquets, Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes, Viruses, 2020, 12, ⟨10.3390/v12030274⟩.
• 2020
  Mathilde Gondard, Sarah Temmam, Elodie Devillers, Valérie Pinarello, Thomas Bigot, Delphine Chrétien, Rosalie Aprelon, Muriel Vayssier Taussat, Emmanuel Albina, Marc Eloit, Sara Moutailler, RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles, Viruses, 2020, 12 (2), ⟨10.3390/v12020144⟩.
• 2019
  Sarah Temmam, Khamsing Vongphayloth, Jeffrey C. Hertz, Ian Sutherland, Bounsavane Douangboubpha, Marc Grandadam, Thomas Bigot, Paul T. Brey, Marc Eloit, Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies, Microbiology Resource Announcements, 2019, 8 (46), pp.e00733-19. ⟨10.1128/MRA.00733-19⟩.
• 2019
  Sarah Temmam, Thomas Bigot, Delphine Chrétien, Mathilde Gondard, Philippe Pérot, Virginie Pommelet, Evelyne Dufour, Stéphane Petres, Elodie Devillers, Thavry Hoem, Valérie Pinarello, Vibol Hul, Khamsing Vongphayloth, Jeffrey C Hertz, Irène Loiseau, Marine Dumarest, Veasna Duong, Muriel Vayssier Taussat, Marc Grandadam, Emmanuel Albina, Philippe Dussart, Sara Moutailler, Julien Cappelle, Paul T Brey, Marc Eloit, Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses, MSphere, 2019, 4 (6), pp.e00645-19. ⟨10.1128/mSphere.00645-19⟩.
• 2019
  Bigot T, Guglielmini J, Criscuolo A, Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences, Data Brief 25:104212.
• 2019
  Temmam S, Hul V, Bigot T, Hoem T, Gorman C, Duong V, Dussart P, Cappelle J, Eloit M, , A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools., Microbiol Resour Announc 2019 Apr; 8(15): .
• 2019
  Sarah Temmam, Delphine Chrétien, Thomas Bigot, Evelyne Dufour, Stéphane Petres, Marc Desquesnes, Elodie Devillers, Marine Dumarest, Léna Yousfi, Sathaporn Jittapalapong, Anamika Karnchanabanthoeng, Kittipong Chaisiri, Léa Gagnieur, Jean-Francois Cosson, Muriel Vayssier Taussat, Serge Morand, Sara Moutailler, Marc Eloit, Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand, Frontiers in Microbiology, 2019, 10, pp.2315. ⟨10.3389/fmicb.2019.02315⟩.
• 2019
  Thomas Bigot, Sarah Temmam, Philippe Pérot, Marc Eloit, RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved], F1000Research, 2020, 8, pp.530. ⟨10.12688/f1000research.18776.2⟩.
• 2017
  Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X, Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium, Genome Biol Evol 2017 12;9(12):3413-3431.
• 2015
  Ferrandiz-Rovira M, Bigot T, Allainé D, Callait-Cardinal MP, Cohas A, Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?, Heredity (Edinb) 2015 May;114(5):485-93.
• 2013
  Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY, Bio++: efficient extensible libraries and tools for computational molecular evolution, Mol. Biol. Evol. 2013 Aug;30(8):1745-50.
• 2013
  Bigot T, Daubin V, Lassalle F, Perrière G, TPMS: a set of utilities for querying collections of gene trees, BMC Bioinformatics 2013 Mar;14:109.
• 2012
  Käfer J, Talianová M, Bigot T, Michu E, Guéguen L, Widmer A, Žlůvová J, Glémin S, Marais GA, Patterns of molecular evolution in dioecious and non-dioecious Silene, J. Evol. Biol. 2013 Feb;26(2):335-46.