• 2025
  Ravneet Kaur Sidhu, Guillem Mas Fiol, Pierre Lê-Bury, Christian E Demeure, Emelyne Bougit, Rémi Beau, Charlotte Balière, Aurelia Kwasiborski, Valérie Caro, Jennifer Klunk, Daniel J Salkeld, Ann Carmichael, Nükhet Varlık, Debi Poinar, David J D Earn, Benjamin M Bolker, Jonathan Dushoff, G Brian Golding, Nicolas Rascovan, Olivier Dussurget, Edward C Holmes, Javier Pizarro-Cerdá, Hendrik N Poinar, Attenuation of virulence in Yersinia pestis across three plague pandemics, Science, 2025, 388 (6750), pp.eadt3880. ⟨10.1126/science.adt3880⟩.
• 2025
  Lopopolo M, Avanzi C, Duchene S, Luisi P, de Flamingh A, Ponce-Soto GY, Tressieres G, Neumeyer S, Lemoine F, Nelson EA, Iraeta-Orbegozo M, Cybulski JS, Mitchell J, Marks VT, Adams LB, Lindo J, DeGiorgio M, Ortiz N, Wiens C, Hiebert J, Bonifaz A, Montes de Oca G, Paredes-Solis V, Franco-Paredes C, Vera-Cabrera L, Pereira Brunelli JG, Jackson M, Spencer JS, Salgado CG, Han XY, Pearce CM, Warren AK, Rosa PS, de Finardi AJ, Belone AFF, Ferreira C, Suffys PN, Fontes ANB, Vasconcellos SEG, Schaub R, Couppié P, Drak Alsibai K, Hernández-Castro R, Silva Miranda M, Estrada-Garcia I, Jurado-Santacruz F, Orlando L, Schroeder H, Quintana-Murci L, Del Papa M, Lahiri R, Malhi RS, Rasmussen S, Rascovan N, Pre-European contact leprosy in the Americas and its current persistence., Science 2025 May; (): eadu7144.
• 2025
  Augias A, Ponce-Soto GY, Chimènes A, Charlier P, Rascovan N, An ancient Epstein-Barr virus genome recovered from a museum penis gourd from Papua., J Infect Dis 2025 Apr; (): .
• 2024
  Maroofian R, Pagnamenta AT, Navabazam A, Schwessinger R, Roberts HE, Lopopolo M, Dehghani M, Vahidi Mehrjardi MY, Haerian A, Soltanianzadeh M, Noori Kooshki MH, Knight SJL, Miller KA, McGowan SJ, Chatron N, Timberlake AT, Melo US, Mundlos S, Buck D, Twigg SRF, Taylor JC, Wilkie AOM, Calpena E, Familial severe skeletal Class II malocclusion with gingival hyperplasia caused by a complex structural rearrangement at the KCNJ2-KCNJ16 locus., HGG Adv 2024 Oct; 5(4): 100352.
• 2024
  Del Papa M, De Los Reyes M, Poiré DG, Rascovan N, Jofré G, Delgado M, Anthropic cut marks in extinct megafauna bones from the Pampean region (Argentina) at the last glacial maximum., PLoS One 2024 ; 19(7): e0304956.
• 2023
  Camila Duitama González, Riccardo Vicedomini, Téo Lemane, Nicolas Rascovan, Hugues Richard, Rayan Chikhi, decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods, Microbiome, 2023, 11 (1), pp.1-12. ⟨10.1186/s40168-023-01670-3⟩.
• 2023
  Quiroz-Morales SE, Muriel-Millán LF, Ponce-Soto GY, González-Valdez A, Castillo-Juárez I, Servín-González L, Soberón-Chávez G, Pseudomonas aeruginosa strains belonging to phylogroup 3 frequently exhibit an atypical quorum sensing response: the case of MAZ105, a tomato rhizosphere isolate., Microbiology (Reading) 2023 Oct; 169(10): .
• 2023
  Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E White, Arthur Kocher, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G Serrano, Julien Fumey, Kadir T Özdoğan, Kelly E Blevins, Kevin G Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J Bravo-Lopez, Mohamed S Sarhan, Nihan D Dagtas, Nikolay Oskolkov, Olivia S Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L Ramachandran, Valentina Vanghi, Christina Warinner, James A Fellows Yates, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT, F1000Research, 2023, 12, pp.926. ⟨10.12688/f1000research.134798.1⟩.
• 2023
  Legendre L, Rode J, Germon I, Pavie M, Quiviger C, Policarpo M, Leclercq J, Père S, Fumey J, Hyacinthe C, Ornelas-García P, Espinasa L, Rétaux S, Casane D, Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining., Zool Res 2023 Jul; 44(4): 701-711.
• 2023
  Borry M, Forsythe A, Andrades Valtueña A, Hübner A, Ibrahim A, Quagliariello A, White AE, Kocher A, Vågene ÅJ, Bartholdy BP, Spurīte D, Ponce-Soto GY, Neumann G, Huang IT, Light I, Velsko IM, Jackson I, Frangenberg J, Serrano JG, Fumey J, Özdoğan KT, Blevins KE, Daly KG, Lopopolo M, Moraitou M, Michel M, van Os M, Bravo-Lopez MJ, Sarhan MS, Dagtas ND, Oskolkov N, Smith OS, Lebrasseur O, Rozwalak P, Eisenhofer R, Wasef S, Ramachandran SL, Vanghi V, Warinner C, Fellows Yates JA, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT., F1000Res 2023 ; 12(): 926.
• 2022
  Foresto E, Revale S, Primo E, Nievas F, Carezzano E, Puente M, Alzari P, Martínez M, Ben-Assaya M, Mornico D, Santoro M, Martínez-Abarca F, Giordano W, Bogino P, , Complete Genome Sequence of Mesorhizobium ciceri Strain R30, a Rhizobium Used as a Commercial Inoculant for Chickpea in Argentina., Microbiol Resour Announc 2022 Nov; 11(11): e0077922.
• 2022
  Nievas F, Revale S, Foresto E, Cossovich S, Puente M, Alzari P, Martínez M, Ben-Assaya M, Mornico D, Santoro M, Martínez-Abarca F, Giordano W, Bogino P, , Complete Genome Sequence of Bradyrhizobium sp. Strain C-145, a Nitrogen-Fixing Rhizobacterium Used as a Peanut Inoculant in Argentina., Microbiol Resour Announc 2022 Aug; 11(8): e0050522.
• 2022
  Hajheidari M, Gerlach N, Dorau K, Omidbakhshfard MA, Pesch L, Hofmann J, Hallab A, Ponce-Soto GY, Kuhalskaya A, Medeiros DB, Bourceret A, , Usadel B, Mayer J, Fernie A, Mansfeldt T, Sonnewald U, Bucher M, Crop genetic diversity uncovers metabolites, elements, and gene networks predicted to be associated with high plant biomass yields in maize., PNAS Nexus 2022 Jul; 1(3): pgac068.
• 2022
  , A blood atlas of COVID-19 defines hallmarks of disease severity and specificity., Cell 2022 Mar; 185(5): 916-938.e58.
• 2022
  Planas D, Saunders N, Maes P, Guivel-Benhassine F, Planchais C, Buchrieser J, Bolland WH, Porrot F, Staropoli I, Lemoine F, Péré H, Veyer D, Puech J, Rodary J, Baele G, Dellicour S, Raymenants J, Gorissen S, Geenen C, Vanmechelen B, Wawina-Bokalanga T, Martí-Carreras J, Cuypers L, Sève A, Hocqueloux L, Prazuck T, Rey FA, Simon-Loriere E, Bruel T, Mouquet H, André E, Schwartz O, Considerable escape of SARS-CoV-2 Omicron to antibody neutralization., Nature 2022 Feb; 602(7898): 671-675.
• 2021
  Jansen K, Shikama-Dorn N, Attar M, Maio S, Lopopolo M, Buck D, Holländer GA, Sansom SN, RBFOX splicing factors contribute to a broad but selective recapitulation of peripheral tissue splicing patterns in the thymus., Genome Res 2021 Nov; 31(11): 2022-2034.
• 2021
  Thannesberger J, Rascovan N, Eisenmann A, Klymiuk I, Zittra C, Fuehrer HP, Scantlebury-Manning T, Gittens-St Hilaire M, Austin S, Landis RC, Steininger C, , Viral metagenomics reveals the presence of novel Zika virus variants in Aedes mosquitoes from Barbados., Parasit Vectors 2021 Jun; 14(1): 343.
• 2021
  Danko D, Bezdan D, Afshin EE, Ahsanuddin S, [70 authors], Rascovan N, [23 authors], Mason CE, , , A global metagenomic map of urban microbiomes and antimicrobial resistance., Cell 2021 Jun; 184(13): 3376-3393.e17.
• 2021
  Roberts HE, Lopopolo M, Pagnamenta AT, Sharma E, Parkes D, Lonie L, Freeman C, Knight SJL, Lunter G, Dreau H, Lockstone H, Taylor JC, Schuh A, Bowden R, Buck D, Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma., Sci Rep 2021 Mar; 11(1): 6408.
• 2020
  Mornico D, Hon CC, Koutero M, Weber C, Coppee JY, Dillies MA, Guillen N, , Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica., Sci Rep 2020 11; 10(1): 20190.
• 2020
  Thannesberger J, Rascovan N, Eisenmann A, Klymiuk I, Zittra C, Fuehrer HP, Scantlebury-Manning T, Gittens-St Hilaire M, Austin S, Landis RC, Steininger C, , Highly Sensitive Virome Characterization of Aedes aegypti and Culex pipiens Complex from Central Europe and the Caribbean Reveals Potential for Interspecies Viral Transmission., Pathogens 2020 Aug; 9(9): .
• 2020
  Vázquez-Rosas-Landa M, Ponce-Soto GY, Aguirre-Liguori JA, Thakur S, Scheinvar E, Barrera-Redondo J, Ibarra-Laclette E, Guttman DS, Eguiarte LE, Souza V, Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation., BMC Genomics 2020 Jun; 21(1): 418.
• 2020
  Liu Y, Cheng J, Siejka-Zielińska P, Weldon C, Roberts H, Lopopolo M, Magri A, D'Arienzo V, Harris JM, McKeating JA, Song CX, Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS., Genome Biol 2020 Mar; 21(1): 54.
• 2019
  Ramírez-Nava EJ, Ortega-Cuellar D, González-Valdez A, Castillo-Rodríguez RA, Ponce-Soto GY, Hernández-Ochoa B, Cárdenas-Rodríguez N, Martínez-Rosas V, Morales-Luna L, Serrano-Posada H, Sierra-Palacios E, Arreguin-Espinosa R, Cuevas-Cruz M, Rocha-Ramírez LM, Pérez de la Cruz V, Marcial-Quino J, Gómez-Manzo S, Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5., Int J Mol Sci 2019 Oct; 20(21): .
• 2019
  Martínez-Carranza E, Ponce-Soto GY, Servín-González L, Alcaraz LD, Soberón-Chávez G, Evolution of bacteria seen through their essential genes: the case of Pseudomonas aeruginosa and Azotobacter vinelandii., Microbiology (Reading) 2019 Sep; 165(9): 976-984.
• 2019
  García-Ulloa M, Ponce-Soto GY, González-Valdez A, González-Pedrajo B, Díaz-Guerrero M, Souza V, Soberón-Chávez G, Two Pseudomonas aeruginosa clonal groups belonging to the PA14 clade are indigenous to the Churince system in Cuatro Ciénegas Coahuila, México., Environ Microbiol 2019 Aug; 21(8): 2964-2976.
• 2019
  Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B, MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis., Mol Plant 2019 Jun; 12(6): 879-892.
• 2019
  Dávila Felipe M, Domelevo Entfellner JB, Lemoine F, Truszkowski J, Gascuel O, , Distribution and asymptotic behavior of the phylogenetic transfer distance., J Math Biol 2019 07; 79(2): 485-508.
• 2019
  Rascovan N, Sjögren KG, Kristiansen K, Nielsen R, Willerslev E, Desnues C, Rasmussen S, , Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline., Cell 2019 01; 176(1-2): 295-305.e10.
• 2018
  Vivanco L, Rascovan N, Austin AT, , Plant, fungal, bacterial, and nitrogen interactions in the litter layer of a native Patagonian forest., PeerJ 2018 ; 6(): e4754.
• 2018
  Martínez-Carranza E, Ponce-Soto GY, Díaz-Pérez AL, Cadenas E, Souza V, Campos-García J, Involvement of cyclodipeptides in the competition of bacterial communities in the oligotrophic Churince aquatic system of Cuatro Ciénegas Basin dominated by Gammaproteobacteria., Extremophiles 2018 Jan; 22(1): 73-85.
• 2018
  Martínez-Carranza E, Barajas H, Alcaraz LD, Servín-González L, Ponce-Soto GY, Soberón-Chávez G, Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli., Front Microbiol 2018 ; 9(): 1059.
• 2018
  Martínez-Carranza E, Barajas H, Alcaraz LD, Servín-González L, Ponce-Soto GY, Soberón-Chávez G, Corrigendum: Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli., Front Microbiol 2018 ; 9(): 2330.
• 2017
  Vázquez-Rosas-Landa M, Ponce-Soto GY, Eguiarte LE, Souza V, Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?, Pathog Dis 2017 Jul; 75(5): .
• 2017
  Urbieta MS, Rascovan N, Vázquez MP, Donati E, , Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities., BMC Genomics 2017 06; 18(1): 445.
• 2017
  Soberón-Chávez G, Alcaraz LD, Morales E, Ponce-Soto GY, Servín-González L, The Transcriptional Regulators of the CRP Family Regulate Different Essential Bacterial Functions and Can Be Inherited Vertically and Horizontally., Front Microbiol 2017 ; 8(): 959.
• 2016
  Lopopolo M, Børsting C, Pereira V, Morling N, A study of the peopling of Greenland using next generation sequencing of complete mitochondrial genomes., Am J Phys Anthropol 2016 Dec; 161(4): 698-704.
• 2016
  Grosso-Becerra MV, González-Valdez A, Granados-Martínez MJ, Morales E, Servín-González L, Méndez JL, Delgado G, Morales-Espinosa R, Ponce-Soto GY, Cocotl-Yañez M, Soberón-Chávez G, Pseudomonas aeruginosa ATCC 9027 is a non-virulent strain suitable for mono-rhamnolipids production., Appl Microbiol Biotechnol 2016 Dec; 100(23): 9995-10004.
• 2016
  Rascovan N, Telke A, Raoult D, Rolain JM, Desnues C, , Exploring divergent antibiotic resistance genes in ancient metagenomes and discovery of a novel beta-lactamase family., Environ Microbiol Rep 2016 Oct; 8(5): 886-895.
• 2016
  Rascovan N, Duraisamy R, Desnues C, , Metagenomics and the Human Virome in Asymptomatic Individuals., Annu Rev Microbiol 2016 09; 70(): 125-41.
• 2016
  Asmar S, Rascovan N, Robert C, Drancourt M, , Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424., Genome Announc 2016 Aug; 4(4): .
• 2016
  Rascovan N, Carbonetto B, Perrig D, Díaz M, Canciani W, Abalo M, Alloati J, González-Anta G, Vazquez MP, , Integrated analysis of root microbiomes of soybean and wheat from agricultural fields., Sci Rep 2016 06; 6(): 28084.
• 2016
  Rascovan N, Monteil Bouchard S, Grob JJ, Collet-Villette AM, Gaudy-Marqueste C, Penicaud M, Lepidi H, Raoult D, Desnues C, , Human Polyomavirus-6 Infecting Lymph Nodes of a Patient With an Angiolymphoid Hyperplasia With Eosinophilia or Kimura Disease., Clin Infect Dis 2016 06; 62(11): 1419-21.
• 2016
  Rascovan N, Maldonado J, Vazquez MP, Eugenia Farías M, , Metagenomic study of red biofilms from Diamante Lake reveals ancient arsenic bioenergetics in haloarchaea., ISME J 2016 Feb; 10(2): 299-309.
• 2016
  Rascovan N, Huynh H, Chouin G, Adekola K, Georges-Zimmermann P, Signoli M, Desfosses Y, Aboudharam G, Drancourt M, Desnues C, , Tracing back ancient oral microbiomes and oral pathogens using dental pulps from ancient teeth., NPJ Biofilms Microbiomes 2016 ; 2(): 6.
• 2015
  Asmar S, Rascovan N, Robert C, Drancourt M, , Draft Genome Sequence of Mycobacterium mucogenicum Strain CSUR P2099., Genome Announc 2015 Nov; 3(6): .
• 2015
  Asmar S, Rascovan N, Robert C, Drancourt M, , Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098., Genome Announc 2015 Nov; 3(6): .
• 2015
  Ponce-Soto GY, Aguirre-von-Wobeser E, Eguiarte LE, Elser JJ, Lee ZM, Souza V, Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment., Front Microbiol 2015 ; 6(): 246.
• 2014
  Colombo RP, Fernández Bidondo L, Silvani VA, Carbonetto MB, Rascovan N, Bompadre MJ, Pérgola M, Cuenca G, Godeas AM, , Diversity of arbuscular mycorrhizal fungi in soil from the Pampa Ondulada, Argentina, assessed by pyrosequencing and morphological techniques., Can J Microbiol 2014 Dec; 60(12): 819-27.
• 2014
  Urbieta MS, Rascovan N, Castro C, Revale S, Giaveno MA, Vazquez M, Donati ER, , Draft Genome Sequence of the Novel Thermoacidophilic Archaeon Acidianus copahuensis Strain ALE1, Isolated from the Copahue Volcanic Area in Neuquen, Argentina., Genome Announc 2014 May; 2(3): .
• 2014
  Aguirre-von-Wobeser E, Soberón-Chávez G, Eguiarte LE, Ponce-Soto GY, Vázquez-Rosas-Landa M, Souza V, Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment., Environ Microbiol 2014 May; 16(5): 1366-77.
• 2014
  Burguener GF, Maldonado MJ, Revale S, Fernández Do Porto D, Rascován N, Vázquez M, Farías ME, Marti MA, Turjanski AG, , Draft Genome Sequence of the Polyextremophilic Halorubrum sp. Strain AJ67, Isolated from Hyperarsenic Lakes in the Argentinian Puna., Genome Announc 2014 Feb; 2(1): .
• 2014
  Carbonetto B, Rascovan N, Álvarez R, Mentaberry A, Vázquez MP, , Structure, composition and metagenomic profile of soil microbiomes associated to agricultural land use and tillage systems in Argentine Pampas., PLoS One 2014 ; 9(6): e99949.
• 2013
  Rascovan N, Carbonetto B, Revale S, Reinert MD, Alvarez R, Godeas AM, Colombo R, Aguilar M, Novas MV, Iannone L, Zelada AM, Pardo A, Schrauf G, Mentaberry A, Vazquez MP, , The PAMPA datasets: a metagenomic survey of microbial communities in Argentinean pampean soils., Microbiome 2013 Jul; 1(1): 21.
• 2013
  Farías ME, Rascovan N, Toneatti DM, Albarracín VH, Flores MR, Poiré DG, Collavino MM, Aguilar OM, Vazquez MP, Polerecky L, , The discovery of stromatolites developing at 3570 m above sea level in a high-altitude volcanic lake Socompa, Argentinean Andes., PLoS One 2013 ; 8(1): e53497.
• 2009
  Schor IE, Rascovan N, Pelisch F, Alló M, Kornblihtt AR, , Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing., Proc Natl Acad Sci U S A 2009 Mar; 106(11): 4325-30.