• 2025
  Sonani RR, Liu Y, Xiang J, Cvirkaite-Krupovic V, Du S, Chen X, Krupovic M, Egelman EH, Tat-dependent bundling pilus of a halophilic archaeon assembles by a strand donation mechanism and facilitates biofilm formation., Proc Natl Acad Sci U S A 2025 Aug; 122(31): e2514980122.
• 2025
  Dai Y, Gomez-Raya-Vilanova MV, Teulière J, Toucourou M, Corel E, Haraoui LP, Lopez P, Lapointe FJ, Franceschi C, Baudisch A, Bhattacharya D, Cvirkaite-Krupovic V, Krupovic M, Bapteste E, Gene expression and co-expression heterogeneity patterns and biodemography analyses during the cell cycle encourage aging studies in archaea., Geroscience 2025 Jul; (): .
• 2025
  Miguel Gomez-Raya-Vilanova, Jérôme Teulière, Sofia Medvedeva, Yuping Dai, Eduardo Corel, Philippe Lopez, François-Joseph Lapointe, Debashish Bhattacharya, Louis-Patrick Haraoui, Elodie Turc, Marc Monot, Virginija Cvirkaite-Krupovic, Eric Bapteste, Mart Krupovic, Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes, Nature Communications, 2025, 16 (1), pp.5697. ⟨10.1038/s41467-025-60613-8⟩.
• 2025
  Diana P Baquero, Guillaume Borrel, Anastasia Gazi, Camille Martin-Gallausiaux, Virginija Cvirkaite-Krupovic, Pierre-Henri Commere, Nika Pende, Stéphane Tachon, Anna Sartori-Rupp, Thibaut Douché, Mariette Matondo, Simonetta Gribaldo, Mart Krupovic, Biogenesis of DNA-carrying extracellular vesicles by the dominant human gut methanogenic archaeon, Nature Communications, 2025, 16 (1), pp.5093. ⟨10.1038/s41467-025-60272-9⟩.
• 2025
  Krupovic M, Wang F, Cvirkaite-Krupovic V, Kuhn JH, Dolja VV, Prangishvili D, Egelman EH, Koonin EV, ICTV Virus Taxonomy Profile: Adnaviria 2025, J Gen Virol 2025 Mar; 106(3):002091.
• 2024
  Junfeng Liu, Gunnar N Eastep, Virginija Cvirkaite-Krupovic, Shane T Rich-New, Mark a B Kreutzberger, Edward H Egelman, Mart Krupovic, Fengbin Wang, Two distinct archaeal type IV pili structures formed by proteins with identical sequence, Nature Communications, 2024, 15 (1), pp.5049. ⟨10.1038/s41467-024-45062-z⟩.
• 2023
  Cantero M, Cvirkaite-Krupovic V, Krupovic M, de Pablo PJ, Mechanical tomography of an archaeal lemon-shaped virus reveals membrane-like fluidity of the capsid and liquid nucleoprotein cargo, Proc Natl Acad Sci U S A 2023 Oct; 120(42): e2307717120.
• 2023
  Kreutzberger MAB#, Cvirkaite-Krupovic V#, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F*, Krupovic M*, Egelman EH*, The evolution of archaeal flagellar filaments, Proc Natl Acad Sci U S A 2023 Jul; 120(28): e2304256120.
• 2023
  Baquero DP#, Cvirkaite-Krupovic V#, Hu SS, Fields JL, Liu X, Rensing C, Egelman EH*, Krupovic M*, Wang F*, Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes, Cell 2023 Jun; 186(13): 2853-2864.e8.
• 2023
  Beltran LC, Cvirkaite-Krupovic V, Miller J, Wang F, Kreutzberger MAB, Patkowski JB, Costa TRD, Schouten S, Levental I, Conticello VP, Egelman EH, Krupovic M, Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery, Nat Commun 2023 Feb; 14(1): 666.
• 2022
  Wang F, Cvirkaite-Krupovic V, Krupovic M*, Egelman EH*, Archaeal bundling pili of Pyrobaculum calidifontis reveal similarities between archaeal and bacterial biofilms, Proc Natl Acad Sci U S A 2022 Jun; 119(26): e2207037119.
• 2022
  Chang L, Wang F, Connolly K, Meng H, Su Z, Cvirkaite-Krupovic V, Krupovic M, Egelman EH, Si D, DeepTracer-ID: de novo protein identification from cryo-EM maps, Biophys J 2022 Aug; 121(15): 2840-2848.
• 2022
  Wang F#, Cvirkaite-Krupovic V#, Vos M, Beltran LC, Kreutzberger MAB, Winter JM, Su Z, Liu J, Schouten S, Krupovic M*, Egelman EH*, Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome, Cell 2022 Apr; 185(8): 1297-1307.e11.
• 2021
  Liu J, Cvirkaite-Krupovic V, Commere PH, Yang Y, Zhou F, Forterre P, Shen Y, Krupovic M, Archaeal extracellular vesicles are produced in an ESCRT-dependent manner and promote gene transfer and nutrient cycling in extreme environments, ISME J 2021 10; 15(10): 2892-2905.
• 2021
  Krupovic M, Turner D, Morozova V, Dyall-Smith M, Oksanen HM, Edwards R, Dutilh BE, Lehman SM, Reyes A, Baquero DP, Sullivan MB, Uchiyama J, Nakavuma J, Barylski J, Young MJ, Du S, Alfenas-Zerbini P, Kushkina A, Kropinski AM, Kurtböke I, Brister JR, Lood C, Sarkar BL, Yigang T, Liu Y, Huang L, Wittmann J, Chanishvili N, van Zyl LJ, Rumnieks J, Mochizuki T, Jalasvuori M, Aziz RK, Łobocka M, Stedman KM, Shkoporov AN, Gillis A, Peng X, Enault F, Knezevic P, Lavigne R, Rhee SK, Cvirkaite-Krupovic V, Moraru C, Moreno Switt AI, Poranen MM, Millard A, Prangishvili D, Adriaenssens EM, , Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021, Arch Virol 2021 Aug; (): .
• 2021
  Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M, New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae, Environ Microbiol 2021 Jun; 23(8):4612-4630.
• 2021
  Liu J, Soler N, Gorlas A, Cvirkaite-Krupovic V, Krupovic M, Forterre P, Extracellular membrane vesicles and nanotubes in Archaea, microLife. 2021 Jun; 2:uqab007.
• 2021
  Liu J, Cvirkaite-Krupovic V, Baquero DP, Yang Y, Zhang Q, Shen Y, Krupovic M, Virus-induced cell gigantism and asymmetric cell division in archaea, Proc Natl Acad Sci U S A 2021 Apr; 118(15):e2022578118.
• 2020
  Baquero DP, Contursi P, Piochi M, Bartolucci S, Liu Y, Cvirkaite-Krupovic V, Prangishvili D, Krupovic M, New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities, ISME J 2020 Jul; 14(7): 1821-1833.
• 2019
  Kim JG, Kim SJ, Cvirkaite-Krupovic V, Yu WJ, Gwak JH, López-Pérez M, Rodriguez-Valera F, Krupovic M, Cho JC, Rhee SK, Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea, Proc. Natl. Acad. Sci. U.S.A. 2019 Jul 30;116(31):15645-15650.
• 2019
  Wang F, Cvirkaite-Krupovic V, Kreutzberger MAB, Su Z, de Oliveira GAP, Osinski T, Sherman N, DiMaio F, Wall JS, Prangishvili D, Krupovic M*, Egelman EH*, An extensively glycosylated archaeal pilus survives extreme conditions, Nat Microbiol 2019 Aug;4(8):1401-1410.
• 2019
  Lisa MN, Cvirkaite-Krupovic V, Richet E, André-Leroux G, Alzari PM, Haouz A, Danot O, Double autoinhibition mechanism of signal transduction ATPases with numerous domains (STAND) with a tetratricopeptide repeat sensor, Nucleic Acids Res. 2019 Apr;47(7):3795-3810.
• 2018
  Krupovic M, Cvirkaite-Krupovic V, Iranzo J, Prangishvili D, Koonin EV, Viruses of archaea: Structural, functional, environmental and evolutionary genomics, Virus Res. 2018 Jan;244:181-193.
• 2015
  Krupovic M, Cvirkaite-Krupovic V, Prangishvili D, Koonin EV, Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease, Biol. Direct 2015;10:65.
• 2014
  Cvirkaite-Krupovic V, Carballido-López R, Tavares P, Virus evolution toward limited dependence on nonessential functions of the host: the case of bacteriophage SPP1, J. Virol. 2015 Mar;89(5):2875-83.
• 2014
  Gaudin M, Krupovic M, Marguet E, Gauliard E, Cvirkaite-Krupovic V, Le Cam E, Oberto J, Forterre P, Extracellular membrane vesicles harbouring viral genomes, Environ Microbiol. 2014 Apr;16(4):1167-75.
• 2012
  Krupovic M, Cvirkaite-Krupovic V, Towards a more comprehensive classification of satellite viruses, Nat. Rev. Microbiol. 2012; 10(3):234.
• 2012
  Krupovic M, Cvirkaite-Krupovic V, Sputnik and Mavirus: not more than satellite viruses, Nat. Rev. Microbiol. 2012; 10(1):78.
• 2011
  Krupovic M, Cvirkaite-Krupovic V, Virophages or satellite viruses?, Nat. Rev. Microbiol. 2011 Nov;9(11):762-3.
• 2010
  Cvirkaite-Krupovic V, Krupovic M, Daugelavicius R, Bamford DH, Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host, Virology 2010 Sep;405(1):120-8.
• 2010
  Cvirkaite-Krupovic V, Poranen MM, Bamford DH, Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage phi6, J. Gen. Virol. 2010 Aug;91(Pt 8):2116-20.
• 2010
  Krupovic M, Cvirkaite-Krupovic V, Bamford DH, Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins, Virus Res. 2010 Jul;151(1):97-101.
• 2008
  Krupovic M, Cvirkaite-Krupovic V, Bamford DH, Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1, Mol. Microbiol. 2008 Apr;68(2):492-503.
• 2007
  Daugelavicius R, Gaidelyte A, Cvirkaite-Krupovic V, Bamford DH, On-line monitoring of changes in host cell physiology during the one-step growth cycle of Bacillus phage Bam35, J. Microbiol. Methods 2007 Apr;69(1):174-9.
• 2006
  Gaidelyte A, Cvirkaite-Krupovic V, Daugelavicius R, Bamford JK, Bamford DH, The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis, J. Bacteriol. 2006 Aug;188(16):5925-34.
• 2005
  Daugelavicius R, Cvirkaite V, Gaidelyte A, Bakiene E, Gabrenaite-Verkhovskaya R, Bamford DH, Penetration of enveloped double-stranded RNA bacteriophages phi13 and phi6 into Pseudomonas syringae cells, J. Virol. 2005 Apr;79(8):5017-26.