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2025Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification., Elife 2025 Jan; 13(): .
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2024Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification, Elife.
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2024Genomic and epidemiological evidence for the emergence of a L. infantum/L. donovani hybrid with unusual epidemiology in northern Italy., mBio 2024 Jun; (): e0099524.
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2023BioConvert: a comprehensive format converter for life sciences, NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩.
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2023Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage., Proc Natl Acad Sci U S A 2023 Mar; 120(10): e2220828120.
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2022piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development., Dev Cell 2022 Jan; 57(2): 180-196.e7.
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2021Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis., Nat Commun 2021 06; 12(1): 3492.
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2021Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos., Nat Commun 2021 03; 12(1): 1441.
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2020Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants., Nat Cell Biol 2020 02; 22(2): 235-245.
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2018The somatic piRNA pathway controls germline transposition over generations, Nucleic Acids Research, gky761, https://doi.org/10.1093/nar/gky761.
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2017Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries, Mol. Cell 2017 May;66(3):411-419.e4.
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2016microRNA target prediction programs predict many false positives, Genome Res. 2017 Feb;27(2):234-245.
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2015MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells, PLoS Genet. 2015 May;11(5):e1005194.
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2014Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins, Mol. Biol. Evol. 2014 Jul;31(7):1697-709.
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2014Unravelling the distinct strains of Tharu ancestry, Eur. J. Hum. Genet. 2014 Dec;22(12):1404-12.
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2014Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions, Syst. Biol. 2014 Mar;63(2):272-9.
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2013Evaluating strategies of phylogenetic analyses by the coherence of their results, C. R. Palevol 2013 Sep; 12(2013):381-387.
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2009rely.py, a python script to detect reliable clades, Mol. Phylogenet. Evol. 2010 Jan;54(1):306-8.
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2009SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences, C. R. Biol. 2009 Sep;332(9):832-47.
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2009Agnathan brain anatomy and craniate phylogeny, Acta Zoologica 2009 May; 90(s1):52-68.
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2008RNF213, a new nuclear marker for acanthomorph phylogeny, Mol. Phylogenet. Evol. 2009 Feb;50(2):345-63.
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2008Formalizing reliability in the taxonomic congruence approach, Zool. Scripta 2009 Jan; 38(1):101-112.
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2006Systematic relationships of the bushy‐tailed and black‐footed mongooses (genus Bdeogale, Herpestidae, Carnivora) based on molecular, chromosomal and morphological evidence, J. Zool. Syst. Evol. Res. 2006 Aug; 44(3):251-259.