• 2025
  Fruchard L, Babosan A, Carvalho A, Lang M, Li B, Duchateau M, Giai Gianetto Q, Matondo M, Bonhomme F, Hatin I, Arbes H, Fabret C, Corler E, Sanchez G, Marchand V, Motorin Y, Namy O, de Crécy-Lagard V, Mazel D, Baharoglu Z, Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification., Elife 2025 Jan; 13(): .
• 2024
  Fruchard Louna, Babosan Anamaria, Carvalho Andre, Lang Manon, Li Blaise, Duchateau Magalie, Giai-Gianetto Quentin, Matondo Mariette, Bonhomme Frédéric, Hatin Isabelle, Arbes Hugo, Fabret Céline, Sanchez Guillaume, Marchand Virginie, Motorin Yuri, Namy Olivier, de Crécy-Lagard Valérie, Mazel Didier, Baharoglu Zeynep, Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification, Elife.
• 2024
  Bruno F, Castelli G, Li B, Reale S, Carra E, Vitale F, Scibetta S, Calzolari M, Varani S, Ortalli M, Franceschini E, Gennari W, Rugna G, Späth GF, Genomic and epidemiological evidence for the emergence of a L. infantum/L. donovani hybrid with unusual epidemiology in northern Italy., mBio 2024 Jun; (): e0099524.
• 2023
  Hugo Caro, Sulyvan Dollin, Anne Biton, Bryan Brancotte, Dimitri Desvillechabrol, Yoann Dufresne, Blaise Li, Etienne Kornobis, Frédéric Lemoine, Nicolas Maillet, Amandine Perrin, Nicolas Traut, Bertrand Néron, Thomas Cokelaer, BioConvert: a comprehensive format converter for life sciences, NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩.
• 2023
  Bussotti G, Li B, Pescher P, Vojtkova B, Louradour I, Pruzinova K, Sadlova J, Volf P, Späth GF, Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage., Proc Natl Acad Sci U S A 2023 Mar; 120(10): e2220828120.
• 2022
  Cornes E, Bourdon L, Singh M, Mueller F, Quarato P, Wernersson E, Bienko M, Li B, Cecere G, , piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development., Dev Cell 2022 Jan; 57(2): 180-196.e7.
• 2021
  Singh M, Cornes E, Li B, Quarato P, Bourdon L, Dingli F, Loew D, Proccacia S, Cecere G, , Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis., Nat Commun 2021 06; 12(1): 3492.
• 2021
  Quarato P, Singh M, Cornes E, Li B, Bourdon L, Mueller F, Didier C, Cecere G, , Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos., Nat Commun 2021 03; 12(1): 1441.
• 2020
  Barucci G, Cornes E, Singh M, Li B, Ugolini M, Samolygo A, Didier C, Dingli F, Loew D, Quarato P, Cecere G, , Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants., Nat Cell Biol 2020 02; 22(2): 235-245.
• 2018
  Barckmann B, El-Barouk M, Pélisson A, Mugat B, Li B, Franckhauser C, Fiston Lavier A-S, Mirouze M, Fablet M, Chambeyron S, The somatic piRNA pathway controls germline transposition over generations, Nucleic Acids Research, gky761, https://doi.org/10.1093/nar/gky761.
• 2017
  Akkouche A, Mugat B, Barckmann B, Varela-Chavez C, Li B, Raffel R, Pélisson A, Chambeyron S, Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries, Mol. Cell 2017 May;66(3):411-419.e4.
• 2016
  Pinzón N, Li B, Martinez L, Sergeeva A, Presumey J, Apparailly F, Seitz H, microRNA target prediction programs predict many false positives, Genome Res. 2017 Feb;27(2):234-245.
• 2015
  Mugat B, Akkouche A, Serrano V, Armenise C, Li B, Brun C, Fulga TA, Van Vactor D, Pélisson A, Chambeyron S, MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells, PLoS Genet. 2015 May;11(5):e1005194.
• 2014
  Li B, Lopes JS, Foster PG, Embley TM, Cox CJ, Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins, Mol. Biol. Evol. 2014 Jul;31(7):1697-709.
• 2014
  Chaubey G, Singh M, Crivellaro F, Tamang R, Nandan A, Singh K, Sharma VK, Pathak AK, Shah AM, Sharma V, Singh VK, Selvi Rani D, Rai N, Kushniarevich A, Ilumäe AM, Karmin M, Phillip A, Verma A, Prank E, Singh VK, Li B, Govindaraj P, Chaubey AK, Dubey PK, Reddy AG, Premkumar K, Vishnupriya S, Pande V, Parik J, Rootsi S, Endicott P, Metspalu M, Lahr MM, van Driem G, Villems R, Kivisild T, Singh L, Thangaraj K, Unravelling the distinct strains of Tharu ancestry, Eur. J. Hum. Genet. 2014 Dec;22(12):1404-12.
• 2014
  Cox CJ, Li B, Foster PG, Embley TM, Civán P, Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions, Syst. Biol. 2014 Mar;63(2):272-9.
• 2013
  Li B, Evaluating strategies of phylogenetic analyses by the coherence of their results, C. R. Palevol 2013 Sep; 12(2013):381-387.
• 2009
  Li B, Dettai A, Lecointre G, rely.py, a python script to detect reliable clades, Mol. Phylogenet. Evol. 2010 Jan;54(1):306-8.
• 2009
  Ropiquet A, Li B, Hassanin A, SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences, C. R. Biol. 2009 Sep;332(9):832-47.
• 2009
  Khonsari RH, Li B, Vernier P, Northcutt RG, Janvier P, Agnathan brain anatomy and craniate phylogeny, Acta Zoologica 2009 May; 90(s1):52-68.
• 2008
  Li B, Dettaï A, Cruaud C, Couloux A, Desoutter-Meniger M, Lecointre G, RNF213, a new nuclear marker for acanthomorph phylogeny, Mol. Phylogenet. Evol. 2009 Feb;50(2):345-63.
• 2008
  Li B, Lecointre G, Formalizing reliability in the taxonomic congruence approach, Zool. Scripta 2009 Jan; 38(1):101-112.
• 2006
  Perez M, Li B, Tillier A, Cruaud A, Veron G, Systematic relationships of the bushy‐tailed and black‐footed mongooses (genus Bdeogale, Herpestidae, Carnivora) based on molecular, chromosomal and morphological evidence, J. Zool. Syst. Evol. Res. 2006 Aug; 44(3):251-259.