• 2025
  Mareuil F, Torchet R, Ruano LC, Mallet V, Nilges M, Bouvier G, Sperandio O, InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep., Nucleic Acids Res 2025 May; (): .
• 2024
  Perraud V, Vanderhoydonck B, Bouvier G, Dias de Melo G, Kilonda A, Koukni M, Jochmans D, Rogée S, Ben Khalifa Y, Kergoat L, Lannoy J, Van Buyten T, Izadi-Pruneyre N, Chaltin P, Neyts J, Marchand A, Larrous F, Bourhy H, Mechanism of action of phthalazinone derivatives against rabies virus., Antiviral Res 2024 Apr; 224(): 105838.
• 2022
  Bouvier G, Bardiaux B, Pellarin R, Rapisarda C, Nilges M, , Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution., Biomolecules 2022 Sep; 12(9): .
• 2022
  Colcombet-Cazenave B, Cordier F, Zhu Y, Bouvier G, Litsardaki E, Laserre L, Prevost MS, Raynal B, Caillet-Saguy C, Wolff N, , Deciphering the Molecular Interaction Between the Adhesion G Protein-Coupled Receptor ADGRV1 and its PDZ-Containing Regulator PDZD7., Front Mol Biosci 2022 ; 9(): 923740.
• 2021
  Mallet V, Checa Ruano L, Moine Franel A, Nilges M, Druart K, Bouvier G, Sperandio O, InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions., Bioinformatics 2022 Feb; 38(5): 1261-1268.
• 2018
  Bouvier G, Simenel C, Jang J, Kalia NP, Choi I, Nilges M, Pethe K, Izadi-Pruneyre N. , Target engagement and binding mode of an anti-tuberculosis drug to its bacterial target deciphered in whole living cells by NMR., Biochemistry. 2019 Feb 12;58(6):526-533. doi: 10.1021/acs.biochem.8b00975. .
• 2018
  Xu C, Bouvier G, Bardiaux B, Nilges M, Malliavin T, Lisser A, Ordering Protein Contact Matrices, Comput Struct Biotechnol J. 2018 Mar;16:140-56.
• 2016
  Ferber M, Kosinski J, Ori A, Rashid UJ, Moreno-Morcillo M, Simon B, Bouvier G, Batista PR, Müller CW, Beck M, Nilges M, Automated structure modeling of large protein assemblies using crosslinks as distance restraints, Nat. Methods 2016 Jun;13(6):515-20.
• 2015
  Gault J, Ferber M, Machata S, Imhaus AF, Malosse C, Charles-Orszag A, Millien C, Bouvier G, Bardiaux B, Péhau-Arnaudet G, Klinge K, Podglajen I, Ploy MC, Seifert HS, Nilges M, Chamot-Rooke J, Duménil G, Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation, PLoS Pathog. 2015 Sep;11(9):e1005162.
• 2015
  Cortés-Ciriano I, van Westen GJ, Bouvier G, Nilges M, Overington JP, Bender A, Malliavin TE, , Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel., Bioinformatics 2016 Jan; 32(1): 85-95.
• 2015
  Cortes-Ciriano I, Bouvier G, Nilges M, Maragliano L, Malliavin TE, Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information, J Chem Theory Comput 2015 Jul;11(7):3446-54.
• 2015
  Harigua-Souiai E, Cortes-Ciriano I, Desdouits N, Malliavin TE, Guizani I, Nilges M, Blondel A, Bouvier G, Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis, BMC Bioinformatics 2015 Mar;16:93.
• 2014
  Bouvier G, Desdouits N, Ferber M, Blondel A, Nilges M, An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps, Bioinformatics 2015 May;31(9):1490-2.
• 2014
  Nivaskumar M, Bouvier G, Campos M, Nadeau N, Yu X, Egelman EH, Nilges M, Francetic O, Distinct docking and stabilization steps of the Pseudopilus conformational transition path suggest rotational assembly of type IV pilus-like fibers, Structure 2014 May;22(5):685-96.
• 2014
  Bouvier G, Duclert-Savatier N, Desdouits N, Meziane-Cherif D, Blondel A, Courvalin P, Nilges M, Malliavin TE, Functional motions modulating VanA ligand binding unraveled by self-organizing maps, J Chem Inf Model 2014 Jan;54(1):289-301.
• 2013
  Miri L, Bouvier G, Kettani A, Mikou A, Wakrim L, Nilges M, Malliavin TE, Stabilization of the integrase-DNA complex by Mg2+ ions and prediction of key residues for binding HIV-1 integrase inhibitors, Proteins 2014 Mar;82(3):466-78.
• 2012
  Spill YG, Bouvier G, Nilges M, A convective replica-exchange method for sampling new energy basins, J Comput Chem 2013 Jan;34(2):132-40.
• 2012
  Mantsyzov AB, Bouvier G, Evrard-Todeschi N, Bertho G, Contact-based ligand-clustering approach for the identification of active compounds in virtual screening, Adv Appl Bioinform Chem 2012;5:61-79.
• 2009
  Bouvier G, Evrard-Todeschi N, Girault JP, Bertho G, Automatic clustering of docking poses in virtual screening process using self-organizing map, Bioinformatics 2010 Jan;26(1):53-60.
• 2008
  Bertho G, Bouvier G, Hoa GH, Girault JP, The key-role of tyrosine 155 in the mechanism of prion transconformation as highlighted by a study of sheep mutant peptides, Peptides 2008 Jul;29(7):1073-84.