• 2025
  Morizet D, Foucher I, Mignerey I, Alunni A, Bally-Cuif L, Notch signaling blockade links transcriptome heterogeneity in quiescent neural stem cells with reactivation routes and potential., Sci Adv 2025 Aug; 11(35): eadu3189.
• 2025
  Bennabi I, Hansen P, Merle M, Pineau J, Lopez-Delisle L, Kolly D, Duboule D, Mayran A, Gregor T, Size-dependent temporal decoupling of morphogenesis and transcriptional programs in pseudoembryos., Sci Adv 2025 Aug; 11(34): eadv7790.
• 2025
  Guibert N, Mocho JP, Bally-Cuif L, Bedu S, Balance Between Daily Water Renewal and Nitrate Levels in a Recirculating Zebrafish Housing System., Zebrafish 2025 Aug; (): .
• 2025
  Levayer R, Special issue: “Novel functions of programmed cell death in development: Current status and future challenges”., Semin Cell Dev Biol 2025 Jul; 174(): 103637.
• 2025
  Thetiot M, Cossart P, Bally-Cuif L, Mini-organs and early embryos in vitro: what is at stake?, C R Biol 2025 Jul; 348(): 159-166.
• 2025
  Chen PT, Levo M, Zoller B, Gregor T, A conserved coupling of transcriptional ON and OFF periods underlies bursting dynamics., Nat Struct Mol Biol 2025 Jul; (): .
• 2025
  Morizet D, Bally-Cuif L, Reduced Adult Neurogenesis in Humans Results From a Tradeoff Rather Than Direct Negative Selection., Bioessays 2025 Jul; (): e70041.
• 2025
  Marlies E Oomen, A Nicole Fox, Inma Gonzalez, Amandine Molliex, Thaleia Papadopoulou, Pablo Navarro, Job Dekker, Mitotic chromosomes harbor cell type and species-specific structural features within a universal loop array conformation, Genome Research, In press, ⟨10.1101/gr.280648.125⟩.
• 2025
  Kalfon J, Samaran J, Peyré G, Cantini L, scPRINT: pre-training on 50 million cells allows robust gene network predictions., Nat Commun 2025 Apr; 16(1): 3607.
• 2025
  Grata A, Levayer R, Epithelial cell extrusion at a glance., J Cell Sci 2025 Apr; 138(8): .
• 2025
  Thetiot M, Sart S, Cussigh D, Coolen M, Baroud CN, Bally-Cuif L, Generation and Pharmacological Manipulation of 3D-Spheroid Cultures Derived From Zebrafish Adult Neural Stem Cells in a Droplet-Based Microfluidic Platform., Biol Cell 2025 Apr; 117(4): e70007.
• 2025
  Michaut A, Chamolly A, Villedieu A, Corson F, Gros J, A tension-induced morphological transition shapes the avian extra-embryonic territory., Curr Biol 2025 Mar; (): .
• 2025
  Camard L, Stephen T, Yahia-Cherbal H, Guillemot V, Mella S, Baillet V, Lopez-Maestre H, Capocefalo D, Cantini L, Leloup C, Marsande J, Garro K, Sienes Bailo J, Dangien A, Pietrosemoli N, Hasan M, Wang H, Eckle SBG, Fourie AM, Greving C, Joyce-Shaikh B, Parker R, Cua DJ, Bianchi E, Rogge L, IL-23 tunes inflammatory functions of human mucosal-associated invariant T cells., iScience 2025 Feb; 28(2): 111898.
• 2024
  Rosa F, Dray N, Bedu S, Bally-Cuif L, Non-apoptotic caspase events and Atf3 expression underlie direct neuronal differentiation of adult neural stem cells., Development 2024 Nov; 151(22): .
• 2024
  Chouly M, Bally-Cuif L, Generating neurons in the embryonic and adult brain: compared principles and mechanisms., C R Biol 2024 Nov; 347(): 199-221.
• 2024
  Foley T, Thetiot M, Bally-Cuif L, Neural Stem Cell Regulation in Zebrafish., Annu Rev Genet 2024 Nov; 58(1): 249-272.
• 2024
  Nicola Festuccia, Sandrine Vandormael-Pournin, Almira Chervova, Anna Geiselman, Francina Langa, Rémi-Xavier Coux, Inma Gonzalez, Guillaume Giraud Collet, Michel Cohen-Tannoudji, Pablo Navarro, Nr5a2 is dispensable for zygotic genome activation but essential for morula development, Science, 2024, 386 (6717), pp.eadg7325. ⟨10.1126/science.adg7325⟩.
• 2024
  Caldarelli P, Chamolly A, Villedieu A, Alegria-Prévot O, Phan C, Gros J, Corson F, Self-organized tissue mechanics underlie embryonic regulation., Nature 2024 Sep; (): .
• 2024
  Samaran J, Peyré G, Cantini L, scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features., Nat Commun 2024 Sep; 15(1): 7762.
• 2024
  Monticelli S, Sommer A, AlHajj Hassan Z, Garcia Rodriguez C, Adé K, Cattenoz P, Delaporte C, Gomez Perdiguero E, Giangrande A, Early-wave macrophages control late hematopoiesis., Dev Cell 2024 May; 59(10): 1284-1301.e8.
• 2024
  Morizet D, Foucher I, Alunni A, Bally-Cuif L, Reconstruction of macroglia and adult neurogenesis evolution through cross-species single-cell transcriptomic analyses., Nat Commun 2024 Apr; 15(1): 3306.
• 2024
  Trimbour R, Deutschmann IM, Cantini L, Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS., Bioinformatics 2024 Mar; (): .
• 2024
  Labusch M, Thetiot M, Than-Trong E, Morizet D, Coolen M, Varet H, Legendre R, Ortica S, Mancini L, Bally-Cuif L, Prosaposin maintains adult neural stem cells in a state associated with deep quiescence., Stem Cell Reports 2024 Apr; 19(4): 515-528.
• 2024
  Levayer R, Staying away from the breaking point: Probing the limits of epithelial cell elimination., Curr Opin Cell Biol 2024 Jan; 86(): 102316.
• 2024
  Matamoro-Vidal A, Cumming T, Davidović A, Levillayer F, Levayer R, Patterned apoptosis has an instructive role for local growth and tissue shape regulation in a fast-growing epithelium., Curr Biol 2024 Jan; (): .
• 2024
  Chervova A, Molliex A, Baymaz HI, Coux RX, Papadopoulou T, Mueller F, Hercul E, Fournier D, Dubois A, Gaiani N, Beli P, Festuccia N, Navarro P, Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells., Nat Struct Mol Biol 2024 Jan; (): .
• 2023
  Huizing GJ, Deutschmann IM, Peyré G, Cantini L, Paired single-cell multi-omics data integration with Mowgli., Nat Commun 2023 Nov; 14(1): 7711.
• 2023
  Stevick RJ, Audrain B, Bedu S, Dray N, Ghigo JM, Pérez-Pascual D, Anti-diarrheal drug loperamide induces dysbiosis in zebrafish microbiota via bacterial inhibition., Microbiome 2023 Nov; 11(1): 252.
• 2023
  Crozet F, Levayer R, Emerging roles and mechanisms of ERK pathway mechanosensing., Cell Mol Life Sci 2023 Nov; 80(12): 355.
• 2023
  Banach-Latapy A, Rincheval V, Briand D, Guénal I, Spéder P, Differential adhesion during development establishes individual neural stem cell niches and shapes adult behaviour in Drosophila., PLoS Biol 2023 Nov; 21(11): e3002352.
• 2023
  Crochemore C, Chica C, Garagnani P, Lattanzi G, Horvath S, Sarasin A, Franceschi C, Bacalini MG, Ricchetti M, Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome., Aging Cell 2023 Sep; (): e13959.
• 2023
  Laure Mancini, Boris Guirao, Sara Ortica, Miriam Labusch, Felix Cheysson, Valentin Bonnet, Minh Son Phan, Sébastien Herbert, Pierre Mahou, Emilie Menant, Sébastien Bedu, Jean-Yves Tinevez, Charles Baroud, Emmanuel Beaurepaire, Yohanns Bellaiche, Laure Bally-Cuif, Nicolas Dray, Apical size and deltaA expression predict adult neural stem cell decisions along lineage progression, Science Advances , 2023, 9 (35), pp.eadg7519. ⟨10.1126/sciadv.adg7519⟩.
• 2023
  Sutcu HH, Montagne B, Ricchetti M, DNA-PKcs regulates myogenesis in an Akt-dependent manner independent of induced DNA damage., Cell Death Differ 2023 Jul; (): .
• 2023
  Cumming T, Levayer R, Toward a predictive understanding of epithelial cell death., Semin Cell Dev Biol 2023 Jul; (): .
• 2023
  Brückner DB, Chen H, Barinov L, Zoller B, Gregor T, Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome., Science 2023 Jun; 380(6652): 1357-1362.
• 2023
  Villars A, Letort G, Valon L, Levayer R, DeXtrusion: automatic recognition of epithelial cell extrusion through machine learning in vivo., Development 2023 Jul; 150(13): .
• 2023
  Murayama E, Vivier C, Schmidt A, Herbomel P, Alcam-a and Pdgfr-α are essential for the development of sclerotome-derived stromal cells that support hematopoiesis., Nat Commun 2023 Mar; 14(1): 1171.
• 2023
  Moigneu C, Abdellaoui S, Ramos-Brossier M, Pfaffenseller B, Wollenhaupt-Aguiar B, de Azevedo Cardoso T, Chiche A, Kuperwasser N, Azevedo da Silva R, Pedrotti Moreira F, Li H, Oury F, Kapczinski F, Lledo PM, Katsimpardi L, , Systemic GDF11 attenuates depression-like phenotype in aged mice via stimulation of neuronal autophagy., Nat Aging 2023 Feb; 3(2): 213-228.
• 2023
  Gonen N, Eozenou C, Mitter R, Elzaiat M, Stévant I, Aviram R, Bernardo AS, Chervova A, Wankanit S, Frachon E, Commère PH, Brailly-Tabard S, Valon L, Barrio Cano L, Levayer R, Mazen I, Gobaa S, Smith JC, McElreavey K, Lovell-Badge R, Bashamboo A, , In vitro cellular reprogramming to model gonad development and its disorders., Sci Adv 2023 Jan; 9(1): eabn9793.
• 2023
  Staneva R, Levayer R, Cell polarity and extrusion: How to polarize extrusion and extrude misspolarized cells?, Curr Top Dev Biol 2023 ; 154(): 131-167.
• 2023
  Netta Haroush, Michal Levo, Eric Wieschaus, Thomas Gregor, Functional analysis of the Drosophila eve locus in response to non-canonical combinations of gap gene expression levels, Developmental Cell, In press, ⟨10.1016/j.devcel.2023.10.001⟩.
• 2022
  Demy DL, Touret AL, Lancino M, Tauzin M, Capuana L, Pierre C, Herbomel P, , Trim33 conditions the lifespan of primitive macrophages and onset of definitive macrophage production., Development 2022 Sep; (): .
• 2022
  Crochemore C, Cimmaruta C, Fernández-Molina C, Ricchetti M, , Reactive Species in Progeroid Syndromes and Aging-Related Processes., Antioxid Redox Signal 2022 07; 37(1-3): 208-228.
• 2022
  Ichim G, Gibert B, Adriouch S, Brenner C, Davoust N, Desagher S, Devos D, Dokudovskaya S, Dubrez L, Estaquier J, Gillet G, Guénal I, Juin PP, Kroemer G, Legembre P, Levayer R, Manon S, Mehlen P, Meurette O, Micheau O, Mignotte B, Nguyen-Khac F, Popgeorgiev N, Poyet JL, Priault M, Ricci JE, Riquet FB, Susin SA, Suzanne M, Vacher P, Walter L, Mollereau B, Keeping Cell Death Alive: An Introduction into the French Cell Death Research Network., Biomolecules 2022 Jun; 12(7): .
• 2022
  Villars A, Matamoro-Vidal A, Levillayer F, Levayer R, , Microtubule disassembly by caspases is an important rate-limiting step of cell extrusion., Nat Commun 2022 Jun; 13(1): 3632.
• 2022
  Grimaldi A, Comai G, Mella S, Tajbakhsh S, , Identification of bipotent progenitors that give rise to myogenic and connective tissues in mouse., Elife 2022 Feb; 11(): .
• 2022
  Alexis Villars, Romain Levayer, Collective effects in epithelial cell death and cell extrusion, Current Opinion in Genetics and Development, 2022, 72, pp.8-14. ⟨10.1016/j.gde.2021.09.004⟩.
• 2022
  Cornes E, Bourdon L, Singh M, Mueller F, Quarato P, Wernersson E, Bienko M, Li B, Cecere G, , piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development., Dev Cell 2022 Jan; 57(2): 180-196.e7.
• 2021
  Levayer R, , Cell competition: Bridging the scales through cell-based modeling., Curr Biol 2021 Jul; 31(13): R856-R858.
• 2021
  Herbert S, Valon L, Mancini L, Dray N, Caldarelli P, Gros J, Esposito E, Shorte SL, Bally-Cuif L, Aulner N, Levayer R, Tinevez JY, LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images., BMC Biol 2021 Jul; 19(1): 136.
• 2021
  Valon L, Davidović A, Levillayer F, Villars A, Chouly M, Cerqueira-Campos F, Levayer R, , Robustness of epithelial sealing is an emerging property of local ERK feedback driven by cell elimination., Dev Cell 2021 06; 56(12): 1700-1711.e8.
• 2020
  Than-Trong E, Kiani B, Dray N, Ortica S, Simons B, Rulands S, Alunni A, Bally-Cuif L, , Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells., Sci Adv 2020 May; 6(18): eaaz5424.
• 2020
  Corman R, Boutu W, Campalans A, Radicella P, Duarte J, Kholodtsova M, Bally-Cuif L, Dray N, Harms F, Dovillaire G, Bucourt S, Merdji H, , Lensless microscopy platform for single cell and tissue visualization., Biomed Opt Express 2020 May; 11(5): 2806-2817.
• 2020
  Villars A, Levayer R, , Cell Extrusion: Crowd Pushing and Sticky Neighbours., Curr Biol 2020 02; 30(4): R168-R171.
• 2020
  Labusch M, Mancini L, Morizet D, Bally-Cuif L, , Conserved and Divergent Features of Adult Neurogenesis in Zebrafish., Front Cell Dev Biol 2020 ; 8(): 525.
• 2019
  Couturier L, Mazouni K, Corson F, Schweisguth F, Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila., Nat Commun 2019 Aug; 10(1): 3486.
• 2019
  Viswanathan R, Necakov A, Trylinski M, Harish RK, Krueger D, Esposito E, Schweisguth F, Neveu P, De Renzis S, Optogenetic inhibition of Delta reveals digital Notch signalling output during tissue differentiation, EMBO Rep. 2019 Oct;:e47999.
• 2019
  Trylinski M, Schweisguth F, Activation of Arp2/3 by WASp Is Essential for the Endocytosis of Delta Only during Cytokinesis in Drosophila, Cell Rep 2019 Jul;28(1):1-10.e3.
• 2019
  Schweisguth F, Corson F, Self-Organization in Pattern Formation, Dev. Cell 2019 Jun;49(5):659-677.
• 2019
  Gervais L, van den Beek M, Josserand M, Sallé J, Stefanutti M, Perdigoto CN, Skorski P, Mazouni K, Marshall OJ, Brand AH, Schweisguth F, Bardin AJ, Stem Cell Proliferation Is Kept in Check by the Chromatin Regulators Kismet/CHD7/CHD8 and Trr/MLL3/4, Dev. Cell 2019 May;49(4):556-573.e6.
• 2019
  Levayer R, , Solid stress, competition for space and cancer: The opposing roles of mechanical cell competition in tumour initiation and growth., Semin Cancer Biol 2020 06; 63(): 69-80.
• 2019
  Henrique D, Schweisguth F, Mechanisms of Notch signaling: a simple logic deployed in time and space, Development 2019 Feb;146(3).
• 2019
  Moreno E, Valon L, Levillayer F, Levayer R, , Competition for Space Induces Cell Elimination through Compaction-Driven ERK Downregulation., Curr Biol 2019 01; 29(1): 23-34.e8.
• 2018
  Andriatsilavo M, Stefanutti M, Siudeja K, Perdigoto CN, Boumard B, Gervais L, Gillet-Markowska A, Al Zouabi L, Schweisguth F, Bardin AJ, Spen limits intestinal stem cell self-renewal, PLoS Genet. 2018 11;14(11):e1007773.
• 2016
  Levayer R, Dupont C, Moreno E, , Tissue Crowding Induces Caspase-Dependent Competition for Space., Curr Biol 2016 Mar; 26(5): 670-7.