• 2024
  Izadi-Pruneyre, N., Karami, Y., Nilges, M., Structure and Dynamics of Type 4a Pili and Type 2 Secretion System Endopili, In: Macromolecular Protein Complexes V, vol 104. Chapter 21. p549-563.
• 2022
  Temmam S, Vongphayloth K, Baquero E, Munier S, Bonomi M, Regnault B, Douangboubpha B, Karami Y, Chrétien D, Sanamxay D, Xayaphet V, Paphaphanh P, Lacoste V, Somlor S, Lakeomany K, Phommavanh N, Pérot P, Dehan O, Amara F, Donati F, Bigot T, Nilges M, Rey FA, van der Werf S, Brey PT, Eloit M, Bat coronaviruses related to SARS-CoV-2 and infectious for human cells., Nature 2022 Apr; 604(7905): 330-336.
• 2022
  Yasaman Karami, Samuel Murail, Julien Giribaldi, Benjamin Lefranc, Jérôme Leprince, Sjoerd J. de Vries, Pierre Tufféry, A novel computational method for head-to-tail peptide cyclization: application to urotensin II, bioRxiv 2022.01.05.475045; doi: https://doi.org/10.1101/2022.01.05.475045.
• 2021
  Karami Y, López-Castilla A, Ori A, Thomassin JL, Bardiaux B, Malliavin T, Izadi-Pruneyre N, Francetic O, Nilges M, Computational and biochemical analysis of type IV pilus dynamics and stability., Structure 2021 Dec; 29(12): 1397-1409.e6.
• 2021
  Khakzad H, Happonen L, Karami Y, Chowdhury S, Bergdahl GE, Nilges M, Tran Van Nhieu G, Malmström J, Malmström L, , Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology., PLoS Comput Biol 2021 Jan; 17(1): e1008169.
• 2021
  Spill YG, Karami Y, Maisonneuve P, Wolff N, Nilges M, , Automatic Bayesian Weighting for SAXS Data., Front Mol Biosci 2021 ; 8(): 671011.
• 2020
  Karami Y, Saighi P, Vanderhaegen R, Gerlier D, Longhi S, Laine E, Carbone A, , Predicting substitutions to modulate disorder and stability in coiled-coils., BMC Bioinformatics 2020 Dec; 21(Suppl 19): 573.
• 2019
  Laine E, Karami Y, Carbone A, GEMME: a simple and fast global epistatic model predicting mutational effects, Mol. Biol. Evol. 2019 Aug;.
• 2019
  Karami Y, Rey J, Postic G, Murail S, Tufféry P, de Vries SJ, DaReUS-Loop: a web server to model multiple loops in homology models, Nucleic Acids Res. 2019 May;.
• 2018
  Karami Y, Bitard-Feildel T, Laine E, Carbone A, “Infostery” analysis of short molecular dynamics simulations identifies highly sensitive residues and predicts deleterious mutations, Sci Rep 2018 Oct;8(1):16126.
• 2018
  Karami Y, Guyon F, De Vries S, Tufféry P, DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins, Sci Rep 2018 Sep;8(1):13673.
• 2016
  Karami Y, Laine E, Carbone A, Dissecting protein architecture with communication blocks and communicating segment pairs, BMC Bioinformatics 2016 Jan;17 Suppl 2:13.