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© Research
Member: PhD Student - Alumni

Jean Cury

Alumni
Former member at Microbial Evolutionary Genomics
Scientific Fields
Diseases
Organisms
Applications
Technique

News
News

Emerging diseases: a highly mutant strain of the Elizabethkingia bacterium caused an ou...

24
May 2017
Microbial Evolutionary Genomics
Bioinformatics and Biostatistics HUB
Mutualized Platform for Microbiology
PIBnet – Pasteur International Bioresources network
LabEx IBEID – Integrative Biology of Emerging Infectious Diseases
Genomes and Genetics
Infection & Epidemiology
Center of Bioinformatics, Biostatistics and Integrative Biology
Amandine Perrin
Elise Larsonneur
Olaya Rendueles-Garcia
Jean Cury
Perrine Hugon
Dominique Clermont
Vincent Enouf
Eduardo Rocha
Alexis Criscuolo
Marie Touchon
Sylvain Brisse

Scientists from the Institut Pasteur and the CNRS, working in collaboration with US and Australian teams, have completed the full genomic and evolutionary characterization of the strain of the Elizabethkingia anophelis bacterium that affected […]

Projects

project
Ongoing
7 Members

ANR Magisbac : Genesis and Maintenance of Bacterial Secondary Chromosomes

Eduardo Rocha (PI)

Bacterial genomes are mainly composed of two types of replicons: chromosomes and plasmids. Plasmids are accessory mobile genetic elements acquired by horizontal transfer between strains or species. Their domestication by new hosts is of […]
project
Ongoing
7 Members

ERC-2011-StG EVOMOBILOME

Eduardo Rocha (PI)

Prokaryotes evolve rapidly new functionalities by horizontal gene transfer delivered by mobile genetic elements (MGE). MGE increase relatedness between individuals and thereby might also promote the establishment of microbial social networks. Many studies have […]

Software

software
Ongoing
3 Members

IntegronFinder

Eduardo Rocha (PI)

IntegronFinder is a program that detects integrons in DNA sequences. The program is available on a webserver (Galaxy), or by command line (IntegronFinder on github). Integrons are major genetic element, notorious for their major […]
software
Ongoing
5 Members

CONJscan-T4SSscan

Eduardo Rocha (PI)

Scans a set of protein sequences for type IV secretion systems and relaxases using HMM profiles. See Guglielmini et al. (2011) for our criteria to class loci on the basis of this output. Except […]

Publications