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© Research
Course

Bacterial strain nomenclatures applied to international epidemiological surveillance: A Theoretical and Hands-on Course

Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
29
Oct 2018
Ending Date
30
Oct 2018
Time
10:00:00
25 Rue du Dr Roux, 75015 Paris, France
Address
Building: Building 23 Room: Room Module 4
Location
2018-10-29 10:00:00 2018-10-30 17:00:00 Europe/Paris Bacterial strain nomenclatures applied to international epidemiological surveillance: A Theoretical and Hands-on Course This two-day course will provide participants both theory and hands-on practical exercises on bacterial strain nomenclatures using the core genome MLST concept. Focus will be put on the BIGSdb software tool and database and […] 25 Rue du Dr Roux, 75015 Paris, France Sylvain Brisse sylvain.brisse@pasteur.fr

This two-day course will provide participants both theory and hands-on practical exercises on bacterial strain nomenclatures using the core genome MLST concept. Focus will be put on the BIGSdb software tool and database and its interface with other molecular epidemiology software including BioNumerics.  The cgMLST approach and in particular, cgMLST schemes for Listeria and Campylobacter public health surveillance, will be used in exercises.

The overall objective of the course is to create a distributed community of curators of cgMLST nomenclature databases that will be dedicated to implement genomic epidemiological surveillance of bacterial pathogens using a unified nomenclature of alleles and bacterial genotypes.

The priority focus of the course will be Listeria and Campylobacter, although the concepts and tools that will be presented may be applicable to other bacterial pathogens such as E. coli or Salmonella.  

****

This course is organized with support from :
* Institut Pasteur
* Institut Français de Bioinformatique
* Pulse-Net International
* Association of Public Health Laboratories

Faculty:
* Sylvain Brisse, Institut Pasteur
* Joao Carriço: University of Lisbon, Portugal
* Keith Jolley, Oxford University, UK
* Martin Maiden, Oxford University, UK
* Hannes Pouseele: Applied-Maths, Belgium

Location

Location: 25 Rue du Dr Roux, 75015 Paris, France