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© Research
Publication : Extremophiles : life under extreme conditions

Rahnella sikkimica sp. nov., a novel cold-tolerant bacterium isolated from the glacier of Sikkim Himalaya with plant growth-promoting properties.

Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Extremophiles : life under extreme conditions - 15 Nov 2022

Kumar A, Le Flèche-Matéos A, Kumar R, Lomprez F, Fichenick F, Singh D, Grimont PAD, Kumar S

Link to Pubmed [PMID] – 36378360

Link to DOI – 10.1007/s00792-022-01283-y

Extremophiles 2022 Nov; 26(3): 35

The current study describes a novel species with the strain name ERMR1:05T isolated from the forefield soil of East Rathong Glacier in West Sikkim Himalaya (India). The isolate was facultatively anaerobic, gram-stain negative, non-spore-forming, rod-shaped, and oxidase negative. Whole-genome-based bacterial core gene phylogenetic analysis placed the strain in the genus Rahnella, well separated from Rouxiella spp. The digital DNA-DNA hybridisation and average nucleotide identity values between strain ERMR1:05T and other members of genus Rahnella were below the proposed thresholds for the species delineation. Based on these results, a new species, Rahnella sikkimica sp. nov., is proposed with strain ERMR1:05T (CIP 111636T, MTCC 12598T) as the type strain. The bacterium showed upregulation of cold-stress genes in cold conditions. Additionally, the genome analysis of the bacterium showed the presence of plant growth-promotion factors suggesting its role in crop improvement in cold hilly regions.