Ligne de temps

24 janv. 2023
publication

In-Depth Characterization of Full-Length Archived Viral Genomes after Nine Years of Posttreatment HIV Control.

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06 juil. 2022
publication

Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.

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28 sept. 2021
publication

Drug resistance mutations in HIV: new bioinformatics approaches and challenges.

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09 août 2021
publication

Cuban history of CRF19 recombinant subtype of HIV-1.

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01 août 2021
publication

Using machine learning and big data to explore the drug resistance landscape in HIV.

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24 nov. 2020
publication

Origin, evolution and global spread of SARS-CoV-2

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22 oct. 2020
publication

The seventh pandemic of cholera in Europe revisited by microbial genomics.

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12 oct. 2020
publication

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM.

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03 juin 2020
software

COVID-Align

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26 mars 2020
project

The dynamics of HIV-1 epidemics in Cuba (Campus France)

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24 mars 2020
project

Applying machine learning to sequence analysis (PhD project)

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12 mars 2020
project

Phylogeography

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12 mars 2020
course

Introduction to Molecular Phylogenetics – ENS Paris

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12 mars 2020
event

MCEB 2020

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09 nov. 2019
course

Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019

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09 nov. 2019
course

Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019

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09 nov. 2019
course

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

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01 sept. 2019
publication

A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios

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20 août 2019
publication

A Darwinian Uncertainty Principle

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02 août 2019
publication

PastView: a user-friendly interface to explore ancestral scenarios

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02 juil. 2019
publication

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

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04 juin 2019
event

MCEB 2019

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04 juin 2019
course

Introduction à la phylogénie moléculaire

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29 avr. 2019
publication

Distribution and asymptotic behavior of the phylogenetic transfer distance.

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12 avr. 2019
publication

Accounting for ambiguity in ancestral sequence reconstruction

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06 févr. 2019
publication

Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability

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19 juil. 2018
software

NGPhylogeny.fr

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19 juil. 2018
software

PastML

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19 juil. 2018
software

Booster

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19 juil. 2018
project

The phylodynamics of partner notification and contact tracing in HIV epidemics

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26 juin 2018
course

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

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15 juin 2018
project

Renewing Felsenstein’s phylogenetic bootstrap.

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01 juin 2018
project

Ancestral Reconstruction

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18 avr. 2018
publication

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

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11 avr. 2018
event

MCEB 2018

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29 mars 2018
publication

Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty

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02 janv. 2018
publication

Improving pairwise comparison of protein sequences with domain co-occurrence

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23 oct. 2017
course

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

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06 oct. 2017
publication

The Role of Phylogenetics as a Tool to Predict the Spread of Resistance

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01 sept. 2017
publication

SMS: Smart Model Selection in PhyML

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14 juin 2017
publication

[The tenth gene of HIV]

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10 mai 2017
event

MCEB 2017

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06 mars 2017
publication

Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study

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27 janv. 2017
news

Inauguration du C3BI

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01 janv. 2017
publication

Special Issue: Mathematical and Computational Evolutionary Biology-2015

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14 oct. 2016
project

HIV-1 Drug Resistance Mutation analysis

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14 oct. 2016
event

MCEB 2016

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14 oct. 2016
project

Virogenesis

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14 oct. 2016
project

NGPhylogeny.fr

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11 oct. 2016
publication

The combinatorics of overlapping genes

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26 sept. 2016
publication

Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic.

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24 sept. 2016
publication

In-depth analysis of HIV-1 drug resistance mutations in HIV-infected individuals failing first-line regimens in West and Central Africa

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01 avr. 2016
publication

A ‘stochastic safety radius’ for distance-based tree reconstruction

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07 janv. 2016
publication

Fast and accurate branch lengths estimation for phylogenomic trees

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15 nov. 2015
event

C3BI Mini Symposium – New Data, New Questions, New Methods

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01 oct. 2015
publication

FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program

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24 sept. 2015
publication

A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK

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16 sept. 2015
publication

Fast Dating Using Least-Squares Criteria and Algorithms

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08 avr. 2015
publication

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction

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24 oct. 2014
publication

FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets

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05 juin 2014
publication

Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection

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01 mai 2014
publication

Predicting the ancestral character changes in a tree is typically easier than predicting the root state

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03 févr. 2014
publication

Deep conservation of human protein tandem repeats within the eukaryotes

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