• 2020
  Than-Trong E, Kiani B, Dray N, Ortica S, Simons B, Rulands S, Alunni A, Bally-Cuif L, , Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells., Sci Adv 2020 May; 6(18): eaaz5424.
• 2020
  Than-Trong E, Kiani B, Dray N, Ortica-Gatti S, Simons B, Rulands S, Alunni A, Bally-Cuif L , Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells, Science Advances (in press) BioRxiv.
• 2020
  Coolen M, Labusch M, Mannioui A, Bally-Cuif L, Mosaic Heterochrony in Neural Progenitors Sustains Accelerated Brain Growth and Neurogenesis in the Juvenile Killifish N. furzeri, Curr. Biol. 2020 Jan;.
• 2018
  Than-Trong E, Ortica-Gatti S, Mella S, Nepal C, Alunni A, Bally-Cuif L, Neural stem cell quiescence and stemness are molecularly distinct outputs of the Notch3 signalling cascade in the vertebrate adult brain, Development 2018 05;145(10).
• 2018
  Lange M, Froc C, Grunwald H, Norton WHJ, Bally-Cuif L, Pharmacological analysis of zebrafish lphn3.1 morphant larvae suggests that saturated dopaminergic signaling could underlie the ADHD-like locomotor hyperactivity, Prog. Neuropsychopharmacol. Biol. Psychiatry 2018 Jun;84(Pt A):181-189.
• 2017
  Furlan G, Cuccioli V, Vuillemin N, Dirian L, Muntasell AJ, Coolen M, Dray N, Bedu S, Houart C, Beaurepaire E, Foucher I, Bally-Cuif L, Life-Long Neurogenic Activity of Individual Neural Stem Cells and Continuous Growth Establish an Outside-In Architecture in the Teleost Pallium, Curr. Biol. 2017 Nov;27(21):3288-3301.e3.
• 2016
  Katz S, Cussigh D, Urbán N, Blomfield I, Guillemot F, Bally-Cuif L, Coolen M, A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States, Cell Rep 2016 Oct;17(5):1383-1398.
• 2016
  Galant S, Furlan G, Coolen M, Dirian L, Foucher I, Bally-Cuif L, Embryonic origin and lineage hierarchies of the neural progenitor subtypes building the zebrafish adult midbrain, Dev. Biol. 2016 Dec;420(1):120-135.
• 2016
  Chitnis A, Bally-Cuif L, The Notch meeting: an odyssey from structure to function, Development 2016 Apr;143(7):1229.
• 2016
  Alunni A, Bally-Cuif L, A comparative view of regenerative neurogenesis in vertebrates, Development 2016 Mar;143(5):741-53.
• 2015
  Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, Müller F, Lenhard B, Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs, Nucleic Acids Res. 2016 Apr;44(7):3070-81.
• 2015
  Xing L, Son JH, Stevenson TJ, Lillesaar C, Bally-Cuif L, Dahl T, Bonkowsky JL, A Serotonin Circuit Acts as an Environmental Sensor to Mediate Midline Axon Crossing through EphrinB2, J. Neurosci. 2015 Nov;35(44):14794-808.
• 2015
  Dray N, Bedu S, Vuillemin N, Alunni A, Coolen M, Krecsmarik M, Supatto W, Beaurepaire E, Bally-Cuif L, Large-scale live imaging of adult neural stem cells in their endogenous niche, Development 2015 Oct;142(20):3592-600.
• 2015
  Ishibashi M, Manning E, Shoubridge C, Krecsmarik M, Hawkins TA, Giacomotto J, Zhao T, Mueller T, Bader PI, Cheung SW, Stankiewicz P, Bain NL, Hackett A, Reddy CC, Mechaly AS, Peers B, Wilson SW, Lenhard B, Bally-Cuif L, Gecz J, Becker TS, Rinkwitz S, Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene, Hum. Genet. 2015 Nov;134(11-12):1163-82.
• 2015
  Than-Trong E, Bally-Cuif L, Radial glia and neural progenitors in the adult zebrafish central nervous system, Glia 2015 Aug;63(8):1406-28.
• 2015
  Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, Lenhard B, Bally-Cuif L, van Heyningen V, FitzPatrick DR, Becker TS, Roest Crollius H, Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome, Nat Commun 2015;6:6904.
• 2015
  Rodriguez Viales R, Diotel N, Ferg M, Armant O, Eich J, Alunni A, März M, Bally-Cuif L, Rastegar S, Strähle U, The helix-loop-helix protein id1 controls stem cell proliferation during regenerative neurogenesis in the adult zebrafish telencephalon, Stem Cells 2015 Mar;33(3):892-903.
• 2015
  Cellerino A, Bally-Cuif L, Pizzorusso T, Editorial for “Regulatory RNAs in the nervous system”, Front Cell Neurosci 2015;9:38.
• 2014
  von Trotha JW, Vernier P, Bally-Cuif L, Emotions and motivated behavior converge on an amygdala-like structure in the zebrafish, Eur. J. Neurosci. 2014 Nov;40(9):3302-15.
• 2014
  Salta E, Lau P, Sala Frigerio C, Coolen M, Bally-Cuif L, De Strooper B, A self-organizing miR-132/Ctbp2 circuit regulates bimodal notch signals and glial progenitor fate choice during spinal cord maturation, Dev. Cell 2014 Aug;30(4):423-36.
• 2014
  Dirian L, Galant S, Coolen M, Chen W, Bedu S, Houart C, Bally-Cuif L, Foucher I, Spatial regionalization and heterochrony in the formation of adult pallial neural stem cells, Dev. Cell 2014 Jul;30(2):123-36.
• 2013
  Coolen M, Katz S, Bally-Cuif L, miR-9: a versatile regulator of neurogenesis, Front Cell Neurosci 2013;7:220.
• 2013
  Coolen M, Bally-Cuif L, [miR-9: a key factor of the physiopathological regulation of the neural progenitor state], Med Sci (Paris) 2013 Nov;29(11):1010-7.
• 2013
  Sun M, Hölter SM, Stepan J, Garrett L, Genius J, Kremmer E, Hrabě de Angelis M, Wurst W, Lie DC, Bally-Cuif L, Eder M, Rujescu D, Graw J, Crybb2 coding for βB2-crystallin affects sensorimotor gating and hippocampal function, Mamm. Genome 2013 Oct;24(9-10):333-48.
• 2013
  Lange M, Neuzeret F, Fabreges B, Froc C, Bedu S, Bally-Cuif L, Norton WH, Inter-individual and inter-strain variations in zebrafish locomotor ontogeny, PLoS ONE 2013;8(8):e70172.
• 2013
  Alunni A, Krecsmarik M, Bosco A, Galant S, Pan L, Moens CB, Bally-Cuif L, Notch3 signaling gates cell cycle entry and limits neural stem cell amplification in the adult pallium, Development 2013 Aug;140(16):3335-47.
• 2013
  Kalueff AV, Gebhardt M, Stewart AM, Cachat JM, Brimmer M, Chawla JS, Craddock C, Kyzar EJ, Roth A, Landsman S, Gaikwad S, Robinson K, Baatrup E, Tierney K, Shamchuk A, Norton W, Miller N, Nicolson T, Braubach O, Gilman CP, Pittman J, Rosemberg DB, Gerlai R, Echevarria D, Lamb E, Neuhauss SC, Weng W, Bally-Cuif L, Schneider H, , Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond, Zebrafish 2013 Mar;10(1):70-86.
• 2013
  Bosco A, Bureau C, Affaticati P, Gaspar P, Bally-Cuif L, Lillesaar C, Development of hypothalamic serotoninergic neurons requires Fgf signalling via the ETS-domain transcription factor Etv5b, Development 2013 Jan;140(2):372-84.
• 2012
  Coolen M, Thieffry D, Drivenes Ø, Becker TS, Bally-Cuif L, miR-9 controls the timing of neurogenesis through the direct inhibition of antagonistic factors, Dev. Cell 2012 May;22(5):1052-64.
• 2012
  Strähle U, Bally-Cuif L, Kelsh R, Beis D, Mione M, Panula P, Figueras A, Gothilf Y, Brösamle C, Geisler R, Knedlitschek G, EuFishBioMed (COST Action BM0804): a European network to promote the use of small fishes in biomedical research, Zebrafish 2012 Jun;9(2):90-3.
• 2012
  Amir-Zilberstein L, Blechman J, Sztainberg Y, Norton WH, Reuveny A, Borodovsky N, Tahor M, Bonkowsky JL, Bally-Cuif L, Chen A, Levkowitz G, Homeodomain protein otp and activity-dependent splicing modulate neuronal adaptation to stress, Neuron 2012 Jan;73(2):279-91.
• 2011
  Baumgart EV, Barbosa JS, Bally-Cuif L, Götz M, Ninkovic J, Stab wound injury of the zebrafish telencephalon: a model for comparative analysis of reactive gliosis, Glia 2012 Mar;60(3):343-57.
• 2011
  Norton WH, Stumpenhorst K, Faus-Kessler T, Folchert A, Rohner N, Harris MP, Callebert J, Bally-Cuif L, Modulation of Fgfr1a signaling in zebrafish reveals a genetic basis for the aggression-boldness syndrome, J. Neurosci. 2011 Sep;31(39):13796-807.
• 2011
  Chapouton P, Webb KJ, Stigloher C, Alunni A, Adolf B, Hesl B, Topp S, Kremmer E, Bally-Cuif L, Expression of hairy/enhancer of split genes in neural progenitors and neurogenesis domains of the adult zebrafish brain, J. Comp. Neurol. 2011 Jun;519(9):1748-69.
• 2011
  Webb KJ, Coolen M, Gloeckner CJ, Stigloher C, Bahn B, Topp S, Ueffing M, Bally-Cuif L, The Enhancer of split transcription factor Her8a is a novel dimerisation partner for Her3 that controls anterior hindbrain neurogenesis in zebrafish, BMC Dev. Biol. 2011;11:27.
• 2011
  Rothenaigner I, Krecsmarik M, Hayes JA, Bahn B, Lepier A, Fortin G, Götz M, Jagasia R, Bally-Cuif L, Clonal analysis by distinct viral vectors identifies bona fide neural stem cells in the adult zebrafish telencephalon and characterizes their division properties and fate, Development 2011 Apr;138(8):1459-69.
• 2011
  Radosevic M, Robert-Moreno A, Coolen M, Bally-Cuif L, Alsina B, Her9 represses neurogenic fate downstream of Tbx1 and retinoic acid signaling in the inner ear, Development 2011 Feb;138(3):397-408.
• 2010
  Norton W, Bally-Cuif L, Adult zebrafish as a model organism for behavioural genetics, BMC Neurosci 2010;11:90.
• 2010
  Chapouton P, Skupien P, Hesl B, Coolen M, Moore JC, Madelaine R, Kremmer E, Faus-Kessler T, Blader P, Lawson ND, Bally-Cuif L, Notch activity levels control the balance between quiescence and recruitment of adult neural stem cells, J. Neurosci. 2010 Jun;30(23):7961-74.
• 2010
  Henrique D, Bally-Cuif L, A cross-disciplinary approach to understanding neural stem cells in development and disease, Development 2010 Jun;137(12):1933-8.
• 2010
  Sinha DK, Neveu P, Gagey N, Aujard I, Le Saux T, Rampon C, Gauron C, Kawakami K, Leucht C, Bally-Cuif L, Volovitch M, Bensimon D, Jullien L, Vriz S, Photoactivation of the CreER T2 recombinase for conditional site-specific recombination with high spatiotemporal resolution, Zebrafish 2010 Jun;7(2):199-204.
• 2010
  März M, Chapouton P, Diotel N, Vaillant C, Hesl B, Takamiya M, Lam CS, Kah O, Bally-Cuif L, Strähle U, Heterogeneity in progenitor cell subtypes in the ventricular zone of the zebrafish adult telencephalon, Glia 2010 May;58(7):870-88.
• 2009
  Coolen M, Bally-Cuif L, MicroRNAs in brain development and physiology, Curr. Opin. Neurobiol. 2009 Oct;19(5):461-70.
• 2009
  Webb KJ, Norton WH, Trümbach D, Meijer AH, Ninkovic J, Topp S, Heck D, Marr C, Wurst W, Theis FJ, Spaink HP, Bally-Cuif L, Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine, Genome Biol. 2009;10(7):R81.
• 2009
  Lillesaar C, Stigloher C, Tannhäuser B, Wullimann MF, Bally-Cuif L, Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish, Danio rerio, using transgenics to visualize raphe-specific pet1 expression, J. Comp. Neurol. 2009 Jan;512(2):158-82.
• 2008
  Söker T, Dalke C, Puk O, Floss T, Becker L, Bolle I, Favor J, Hans W, Hölter SM, Horsch M, Kallnik M, Kling E, Moerth C, Schrewe A, Stigloher C, Topp S, Gailus-Durner V, Naton B, Beckers J, Fuchs H, Ivandic B, Klopstock T, Schulz H, Wolf E, Wurst W, Bally-Cuif L, de Angelis MH, Graw J, Pleiotropic effects in Eya3 knockout mice, BMC Dev. Biol. 2008;8:118.
• 2008
  Norton WH, Folchert A, Bally-Cuif L, Comparative analysis of serotonin receptor (HTR1A/HTR1B families) and transporter (slc6a4a/b) gene expression in the zebrafish brain, J. Comp. Neurol. 2008 Dec;511(4):521-42.
• 2008
  Coolen M, Bally-Cuif L, [A microRNA as a gatekeeper of the midbrain-hindbrain boundary], Med Sci (Paris) 2008 Oct;24(10):787-9.
• 2008
  Topp S, Stigloher C, Komisarczuk AZ, Adolf B, Becker TS, Bally-Cuif L, Fgf signaling in the zebrafish adult brain: association of Fgf activity with ventricular zones but not cell proliferation, J. Comp. Neurol. 2008 Oct;510(4):422-39.
• 2008
  Blin M, Norton W, Bally-Cuif L, Vernier P, NR4A2 controls the differentiation of selective dopaminergic nuclei in the zebrafish brain, Mol. Cell. Neurosci. 2008 Dec;39(4):592-604.
• 2008
  Komisarczuk AZ, Topp S, Stigloher C, Kapsimali M, Bally-Cuif L, Becker TS, Enhancer detection and developmental expression of zebrafish sprouty1, a member of the fgf8 synexpression group, Dev. Dyn. 2008 Sep;237(9):2594-603.
• 2008
  Ninkovic J, Stigloher C, Lillesaar C, Bally-Cuif L, Gsk3beta/PKA and Gli1 regulate the maintenance of neural progenitors at the midbrain-hindbrain boundary in concert with E(Spl) factor activity, Development 2008 Sep;135(18):3137-48.
• 2008
  Leucht C, Stigloher C, Wizenmann A, Klafke R, Folchert A, Bally-Cuif L, MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary, Nat. Neurosci. 2008 Jun;11(6):641-8.
• 2007
  Stigloher C, Chapouton P, Adolf B, Bally-Cuif L, Identification of neural progenitor pools by E(Spl) factors in the embryonic and adult brain, Brain Res. Bull. 2008 Mar;75(2-4):266-73.
• 2007
  Chapouton P, Jagasia R, Bally-Cuif L, Adult neurogenesis in non-mammalian vertebrates, Bioessays 2007 Aug;29(8):745-57.
• 2007
  Lillesaar C, Tannhäuser B, Stigloher C, Kremmer E, Bally-Cuif L, The serotonergic phenotype is acquired by converging genetic mechanisms within the zebrafish central nervous system, Dev. Dyn. 2007 Apr;236(4):1072-84.
• 2007
  Bally-Cuif L, Breaking symmetry on time, Dev. Cell 2007 Jan;12(1):1-2.
• 2006
  Chapouton P, Adolf B, Leucht C, Tannhäuser B, Ryu S, Driever W, Bally-Cuif L, her5 expression reveals a pool of neural stem cells in the adult zebrafish midbrain, Development 2006 Nov;133(21):4293-303.
• 2006
  Stigloher C, Ninkovic J, Laplante M, Geling A, Tannhäuser B, Topp S, Kikuta H, Becker TS, Houart C, Bally-Cuif L, Segregation of telencephalic and eye-field identities inside the zebrafish forebrain territory is controlled by Rx3, Development 2006 Aug;133(15):2925-35.
• 2006
  Ninkovic J, Bally-Cuif L, The zebrafish as a model system for assessing the reinforcing properties of drugs of abuse, Methods 2006 Jul;39(3):262-74.
• 2006
  Adolf B, Chapouton P, Lam CS, Topp S, Tannhäuser B, Strähle U, Götz M, Bally-Cuif L, Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon, Dev. Biol. 2006 Jul;295(1):278-93.
• 2006
  Foucher I, Mione M, Simeone A, Acampora D, Bally-Cuif L, Houart C, Differentiation of cerebellar cell identities in absence of Fgf signalling in zebrafish Otx morphants, Development 2006 May;133(10):1891-900.
• 2006
  Ninkovic J, Folchert A, Makhankov YV, Neuhauss SC, Sillaber I, Straehle U, Bally-Cuif L, Genetic identification of AChE as a positive modulator of addiction to the psychostimulant D-amphetamine in zebrafish, J. Neurobiol. 2006 Apr;66(5):463-75.
• 2006
  Bally-Cuif L, Teleosts: simple organisms? Complex behavior, Zebrafish 2006;3(2):127-30.
• 2005
  Hamade A, Deries M, Begemann G, Bally-Cuif L, Genêt C, Sabatier F, Bonnieu A, Cousin X, Retinoic acid activates myogenesis in vivo through Fgf8 signalling, Dev. Biol. 2006 Jan;289(1):127-40.
• 2005
  Beis D, Bartman T, Jin SW, Scott IC, D'Amico LA, Ober EA, Verkade H, Frantsve J, Field HA, Wehman A, Baier H, Tallafuss A, Bally-Cuif L, Chen JN, Stainier DY, Jungblut B, Genetic and cellular analyses of zebrafish atrioventricular cushion and valve development, Development 2005 Sep;132(18):4193-204.
• 2005
  Holzschuh J, Wada N, Wada C, Schaffer A, Javidan Y, Tallafuss A, Bally-Cuif L, Schilling TF, Requirements for endoderm and BMP signaling in sensory neurogenesis in zebrafish, Development 2005 Aug;132(16):3731-42.
• 2005
  Loeb-Hennard C, Kremmer E, Bally-Cuif L, Prominent transcription of zebrafish N-myc (nmyc1) in tectal and retinal growth zones during embryonic and early larval development, Gene Expr. Patterns 2005 Feb;5(3):341-7.
• 2005
  Ninkovic J, Tallafuss A, Leucht C, Topczewski J, Tannhäuser B, Solnica-Krezel L, Bally-Cuif L, Inhibition of neurogenesis at the zebrafish midbrain-hindbrain boundary by the combined and dose-dependent activity of a new hairy/E(spl) gene pair, Development 2005 Jan;132(1):75-88.
• 2004
  Adolf B, Bellipanni G, Huber V, Bally-Cuif L, atoh1.2 and beta3.1 are two new bHLH-encoding genes expressed in selective precursor cells of the zebrafish anterior hindbrain, Gene Expr. Patterns 2004 Nov;5(1):35-41.
• 2004
  Haffner C, Frauli M, Topp S, Irmler M, Hofmann K, Regula JT, Bally-Cuif L, Haass C, Nicalin and its binding partner Nomo are novel Nodal signaling antagonists, EMBO J. 2004 Aug;23(15):3041-50.
• 2004
  Geling A, Plessy C, Rastegar S, Strähle U, Bally-Cuif L, Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary, Development 2004 May;131(9):1993-2006.
• 2004
  Chapouton P, Bally-Cuif L, Neurogenesis, Methods Cell Biol. 2004;76:163-206.
• 2003
  Tallafuss A, Bally-Cuif L, Tracing of her5 progeny in zebrafish transgenics reveals the dynamics of midbrain-hindbrain neurogenesis and maintenance, Development 2003 Sep;130(18):4307-23.
• 2003
  Tallafuss A, Adolf B, Bally-Cuif L, Selective control of neuronal cluster size at the forebrain/midbrain boundary by signaling from the prechordal plate, Dev. Dyn. 2003 Aug;227(4):524-35.
• 2003
  Geling A, Itoh M, Tallafuss A, Chapouton P, Tannhäuser B, Kuwada JY, Chitnis AB, Bally-Cuif L, bHLH transcription factor Her5 links patterning to regional inhibition of neurogenesis at the midbrain-hindbrain boundary, Development 2003 Apr;130(8):1591-604.
• 2003
  Bally-Cuif L, Hammerschmidt M, Induction and patterning of neuronal development, and its connection to cell cycle control, Curr. Opin. Neurobiol. 2003 Feb;13(1):16-25.
• 2002
  Bellipanni G, Rink E, Bally-Cuif L, Cloning of two tryptophan hydroxylase genes expressed in the diencephalon of the developing zebrafish brain, Mech. Dev. 2002 Dec;119 Suppl 1:S215-20.
• 2002
  Bellipanni G, Rink E, Bally-Cuif L, Cloning of two tryptophan hydroxylase genes expressed in the diencephalon of the developing zebrafish brain, Gene Expr. Patterns 2002 Dec;2(3-4):251-6.
• 2002
  Geling A, Steiner H, Willem M, Bally-Cuif L, Haass C, A gamma-secretase inhibitor blocks Notch signaling in vivo and causes a severe neurogenic phenotype in zebrafish, EMBO Rep. 2002 Jul;3(7):688-94.
• 2002
  Lele Z, Folchert A, Concha M, Rauch GJ, Geisler R, Rosa F, Wilson SW, Hammerschmidt M, Bally-Cuif L, parachute/n-cadherin is required for morphogenesis and maintained integrity of the zebrafish neural tube, Development 2002 Jul;129(14):3281-94.
• 2002
  Tallafuss A, Bally-Cuif L, Formation of the head-trunk boundary in the animal body plan: an evolutionary perspective, Gene 2002 Apr;287(1-2):23-32.