• 2018
  Cury J, Oliveira PH, de la Cruz F, Rocha EPC, Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements, Mol. Biol. Evol. 2018 Jun;.
• 2017
  Oliveira PH, Touchon M, Cury J, Rocha EPC, The chromosomal organization of horizontal gene transfer in bacteria, Nat Commun 2017 Oct;8(1):841.
• 2016
  Pedro H. Oliveira, Marie Touchon, and Eduardo P. C. Rocha, Regulation of genetic flux between bacteria by restriction-modification systems., Proc Natl Acad Sci U S A. 2016 May 17;113(20):5658-63. doi: 10.1073/pnas.1603257113. .
• 2015
  Oliveira PH, Mairhofer J, Alves PM, Lara AR, Kontoravdi C, Advances in the Development of Biotherapeutics, Biomed Res Int 2015;2015:793876.
• 2014
  Oliveira PH, da Silva CL, Cabral JM, Concise review: Genomic instability in human stem cells: current status and future challenges, Stem Cells 2014 Nov;32(11):2824-32.
• 2014
  Oliveira PH, Touchon M, Rocha EP, The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts, Nucleic Acids Res. 2014;42(16):10618-31.
• 2014
  Gonçalves GA, Oliveira PH, Gomes AG, Prather KL, Lewis LA, Prazeres DM, Monteiro GA, Evidence that the insertion events of IS2 transposition are biased towards abrupt compositional shifts in target DNA and modulated by a diverse set of culture parameters, Appl. Microbiol. Biotechnol. 2014 Aug;98(15):6609-19.
• 2013
  Oliveira PH, Mairhofer J, Marker-free plasmids for biotechnological applications – implications and perspectives, Trends Biotechnol. 2013 Sep;31(9):539-47.
• 2013
  Oliveira PH, da Silva CL, Cabral JM, An appraisal of human mitochondrial DNA instability: new insights into the role of non-canonical DNA structures and sequence motifs, PLoS ONE 2013;8(3):e59907.
• 2012
  Oliveira PH, Boura JS, Abecasis MM, Gimble JM, da Silva CL, Cabral JM, Impact of hypoxia and long-term cultivation on the genomic stability and mitochondrial performance of ex vivo expanded human stem/stromal cells, Stem Cell Res 2012 Nov;9(3):225-36.
• 2012
  Lewis LA, Astatke M, Umekubo PT, Alvi S, Saby R, Afrose J, Oliveira PH, Monteiro GA, Prazeres DM, Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition, Mob DNA 2012;3(1):1.
• 2011
  Oliveira PH, Prather KL, Prazeres DM, Monteiro GA, Mutation detection in plasmid-based biopharmaceuticals, Biotechnol J 2011 Apr;6(4):378-91.
• 2010
  Oliveira PH, Prather KJ, Prazeres DM, Monteiro GA, Analysis of DNA repeats in bacterial plasmids reveals the potential for recurrent instability events, Appl. Microbiol. Biotechnol. 2010 Aug;87(6):2157-67.
• 2009
  Oliveira PH, Prazeres DM, Monteiro GA, Deletion formation mutations in plasmid expression vectors are unfavored by runaway amplification conditions and differentially selected under kanamycin stress, J. Biotechnol. 2009 Sep;143(4):231-8.
• 2009
  Oliveira PH, Prather KJ, Prazeres DM, Monteiro GA, Structural instability of plasmid biopharmaceuticals: challenges and implications, Trends Biotechnol. 2009 Sep;27(9):503-11.
• 2008
  Oliveira PH, Lemos F, Monteiro GA, Prazeres DM, Recombination frequency in plasmid DNA containing direct repeats–predictive correlation with repeat and intervening sequence length, Plasmid 2008 Sep;60(2):159-65.
• 2008
  Ribeiro SC, Oliveira PH, Prazeres DM, Monteiro GA, High frequency plasmid recombination mediated by 28 bp direct repeats, Mol. Biotechnol. 2008 Nov;40(3):252-60.
• 2006
  Oliveira PH, Batagov A, Ward J, Baganz F, Krabben P, Identification of erythrobactin, a hydroxamate-type siderophore produced by Saccharopolyspora erythraea, Lett. Appl. Microbiol. 2006 Apr;42(4):375-80.