• 2025
  Benimam MM, Meas-Yedid V, Mukherjee S, Frafjord A, Corthay A, Lagache T, Olivo-Marin JC, Statistical analysis of spatial patterns in tumor microenvironment images., Nat Commun 2025 Mar; 16(1): 3090.
• 2024
  Antoine Habis, Vannary Meas-Yedid, Elsa Angelini, Jean-Christophe Olivo-Marin, Deep ContourFlow: Advancing Active Contours with Deep Learning, arXiv:2407.10696.
• 2024
  Benjamin Dorra; Giacomo Nardi; Antoine Habis; Jean-Philippe Annereau; Jean-Christophe Olivo-Marin; Luis Briseno-Roa & Vannary Meas-Yedid, Semi-Supervised Segmentation with Topological Penalization for Quantifying Retinal Degeneration in Histological Sections, 2024 IEEE International Symposium on Biomedical Imaging (ISBI).
• 2024
  Antoine Habis, Roy Rosman Nathanson, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images, Computer Science.
• 2023
  Jules Scholler, Diana Mandache, Marie Christine Mathieu, Aïcha Ben Lakhdar, Marie Darche, Tual Monfort, Claude Boccara, Jean-Christophe Olivo-Marin, Kate Grieve, Vannary Meas-Yedid, Emilie Benoit a la Guillaume, Olivier Thouvenin, Automatic diagnosis and classification of breast surgical samples with dynamic full-field OCT and machine learning, Journal of Medical Imaging, Vol. 10, Issue 3, 034504.
• 2022
  Antoine Habis; Vannary Meas-Yedid; Daniel Felipe González Obando; Jean-Christophe Olivo-Marin BioImage Analysis Unit, Institut Pasteur, CNRS UMR 3691, Paris, France ; Elsa D. Angelini, Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images, 2022 IEEE International Conference on Image Processing (ICIP).
• 2022
  Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin, Spatial Analysis For Histopathology: A Statistical Approach, 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761498⟩.
• 2021
  D. Mandache, E. B. à. l. Guillaume, M. . -C. Mathieu, J. . -C. Olivo-Marin and V. Meas-Yedid, Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).
• 2021
  D. Mandache, E. B. á. l. Guillaume, J. . -C. Olivo-Marin and V. Meas-Yedid, Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).
• 2021
  Alice Koenig, Sarah Mezaache, Jasper Callemeyn, Thomas Barba, Virginie Mathias, Antoine Sicard, Béatrice Charreau, Maud Rabeyrin, Frédérique Dijoud, Cécile Picard, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin, Emmanuel Morelon, Maarten Naesens, Valérie Dubois and Olivier Thaunat, Missing Self-Induced Activation of NK Cells Combines with Non-Complement-Fixing Donor-Specific Antibodies to Accelerate Kidney Transplant Loss in Chronic Antibody-Mediated Rejection, J Am Soc Nephrol . 2021 Feb;32(2):479-494.
• 2020
  Callemeyn J, Lerut E, de Loor H, Arijs I, Thaunat O, Koenig A, Meas-Yedid V, Olivo-Marin JC, Halloran P, Chang J, Thorrez L, Kuypers D, Sprangers B, Van Lommel L, Schuit F, Essig M, Gwinner W, Anglicheau D, Marquet P, Naesens M, , Transcriptional Changes in Kidney Allografts with Histology of Antibody-Mediated Rejection without Anti-HLA Donor-Specific Antibodies., J Am Soc Nephrol 2020 09; 31(9): 2168-2183.
• 2019
  Gonzalez Obando, D.F., Mandache, D., Olivo-Marin, JC., Meas-Yedid, V, Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images, vol 11435.
• 2018
  D. Mandache, E. Dalimier, J. R. Durkin, C. Boceara, J. . -C. Olivo-Marin and V. Meas-Yedid, Basal cell carcinoma detection in full field OCT images using convolutional neural networks, 2016 IEEE International Conference on Multimedia & Expo Workshops (ICMEW).
• 2017
  Sicard A, Meas-Yedid V, Rabeyrin M, Koenig A, Ducreux S, Dijoud F, Hervieu V, Badet L, Morelon E, Olivo-Marin JC, Dubois V, Thaunat O, Computer-assisted topological analysis of renal allograft inflammation adds to risk evaluation at diagnosis of humoral rejection, Kidney Int. 2017 07;92(1):214-226.
• 2017
  Jasiek M, Karras A, Le Guern V, Krastinova E, Mesbah R, Faguer S, Jourde-Chiche N, Fauchais AL, Chiche L, Dernis E, Moulis G, Fraison JB, Lazaro E, Jullien P, Hachulla E, Le Quellec A, Rémy P, Hummel A, Costedoat-Chalumeau N, Ronco P, Vanhille P, Meas-Yedid V, Cordonnier C, Ferlicot S, Daniel L, Seror R, Mariette X, Thervet E, François H, Terrier B, A multicentre study of 95 biopsy-proven cases of renal disease in primary Sjögren’s syndrome, Rheumatology (Oxford) 2017 Mar;56(3):362-370.
• 2017
  Barinov A, Luo L, Gasse P, Meas-Yedid V, Donnadieu E, Arenzana-Seisdedos F, Vieira P, Essential role of immobilized chemokine CXCL12 in the regulation of the humoral immune response, Proc. Natl. Acad. Sci. U.S.A. 2017 Feb;114(9):2319-2324.
• 2014
  Xu-Dubois YC, Hertig A, Lebranchu Y, Hurault de Ligny B, Thervet E, Jauréguy M, Touchard G, Le Pogamp P, Le Meur Y, Toupance O, Heng AE, Bayle F, Girardot-Seguin S, Servais A, Meas-Yedid V, Rondeau E, Progression of pulse pressure in kidney recipients durably exposed to CsA is a risk factor for epithelial phenotypic changes: an ancillary study of the CONCEPT trial, Transpl. Int. 2014 Apr;27(4):344-52.
• 2014
  Boncompain G, Müller C, Meas-Yedid V, Schmitt-Kopplin P, Lazarow PB, Subtil A, The intracellular bacteria Chlamydia hijack peroxisomes and utilize their enzymatic capacity to produce bacteria-specific phospholipids, PLoS ONE 2014;9(1):e86196.
• 2012
  Fabrice de Chaumont, Stéphane Dallongeville, Nicolas Chenouard, Nicolas Hervé, Sorin Pop, Thomas Provoost, Vannary Meas-Yedid, Praveen Pankajakshan, Timothée Lecomte, Yoann Le Montagner, Thibault Lagache, Alexandre Dufour, Jean-Christophe Olivo-Marin, Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 2012, 9 (7), pp.690-696. ⟨10.1038/nmeth.2075⟩.
• 2002
  Zimmer C, Labruyère E, Meas-Yedid V, Guillén N, Olivo-Marin JC, Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing, IEEE Trans Med Imaging 2002 Oct;21(10):1212-21.