• 2025
  Raphael Reme; Alasdair Newson; Elsa Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache, SINETRA: A Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals, ISBI, Houston, TX, USA, 2025, pp. 1-5.
• 2025
  Benimam MM, Meas-Yedid V, Mukherjee S, Frafjord A, Corthay A, Lagache T, Olivo-Marin JC, Statistical analysis of spatial patterns in tumor microenvironment images., Nat Commun 2025 Mar; 16(1): 3090.
• 2025
  Perochon T, Krsnik Z, Massimo M, Ruchiy Y, Romero AL, Mohammadi E, Li X, Long KR, Parkkinen L, Blomgren K, Lagache T, Menassa DA, Holcman D, Unraveling microglial spatial organization in the developing human brain with DeepCellMap, a deep learning approach coupled with spatial statistics, Nat Commun. 2025 Feb 13;16(1):1577..
• 2025
  M Doggaz, Anne Brelot, Jean-Christophe Olivo-Marin, Thibault Lagache, Giacomo Nardi, Neural-network model for characterizing stochastic dynamic variability of cellular particles, International Symposium on Biomedical Imaging, 2025..
• 2024
  Giacomo Nardi, Matheus Santos Sano, Anne Brelot, Jean-Christophe Olivo-Marin, Thibault Lagache, A machine learning approach to distinguish different subdiffusive dynamics in particle tracking, International Symposium on Biomedical Imaging (ISBI), IEEE, May 2024, Athens (Greece), Greece.
• 2024
  Raphael Reme, Alasdair Newson, Elsa Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache, PARTICLE TRACKING IN BIOLOGICAL IMAGES WITH OPTICAL-FLOW ENHANCED KALMAN FILTERING, International Symposium on Biomedical Imaging (ISBI), IEEE, May 2024, Athens (Greece), France.
• 2024
  Alison Hanson, Raphael Reme, Noah Telerman, Wataru Yamamoto, Jean-Christophe Olivo-Marin, Thibault Lagache, Rafael Yuste, Automatic monitoring of neural activity with single-cell resolution in behaving Hydra, Scientific Reports, 2024, 14 (1), pp.5083. ⟨10.1038/s41598-024-55608-2⟩.
• 2023
  Hanson A, Reme R, Telerman N, Yamamoto W, Olivo-Marin JC, Lagache T, Yuste R, Automatic, bioRxiv 2023 Sep; (): .
• 2023
  Raphael Reme, Victor Piriou, Alison Hanson, Rafael Yuste, Alasdair Newson, Elsa Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache, Tracking Intermittent Particles with Self-Learned Visual Features, IEEE Xplore, IEEE, pp.1-5, 2023, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 978-1-6654-7358-3. ⟨10.1109/ISBI53787.2023.10230664⟩.
• 2022
  Momboisse F, Nardi G, Colin P, Hery M, Cordeiro N, Blachier S, Schwartz O, Arenzana-Seisdedos F, Sauvonnet N, Olivo-Marin JC, Lagane B, Lagache T, Brelot A, Tracking receptor motions at the plasma membrane reveals distinct effects of ligands on CCR5 dynamics depending on its dimerization status., Elife 2022 Jul; 11(): .
• 2022
  Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin, Spatial Analysis For Histopathology: A Statistical Approach, 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761498⟩.
• 2022
  Samuel Kubler, Jean-Christophe Olivo-Marin, Thibault Lagache, Statistical Coupling Between time Point-Processes, 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, France. pp.1-4, ⟨10.1109/ISBI52829.2022.9761557⟩.
• 2021
  Lagache T, Hanson A, Pérez-Ortega JE, Fairhall A, Yuste R, Tracking calcium dynamics from individual neurons in behaving animals., PLoS Comput Biol 2021 Oct; 17(10): e1009432.
• 2021
  C. Inizan, M. Caillet, A. Desrames, A. David, Perrine Bomme, A. Mallet, K. Bourdic, O. Lambotte, F. Boufassa, M. Mesel-Lemoine, F. Tangy, G. Pancino, H. Mouquet, T. Lagache, A. Dufour, J.- Olivo-Marin, F.A. Rey, A. Saez-Cirion, M.-I. Thoulouze, HIV-1 hijacks the cell extracellular matrix to spread collectively and efficiently between T lymphocytes, 2021.
• 2021
  Salavessa L, Lagache T, Malardé V, Grassart A, Olivo-Marin JC, Canette A, Trichet M, Sansonetti PJ, Sauvonnet N, Cytokine receptor cluster size impacts its endocytosis and signaling., Proc Natl Acad Sci U S A 2021 Sep; 118(37): .
• 2021
  Samuel Kubler, Suvadip Mukherjee, Jean-Christophe Olivo-Marin, Thibault Lagache, A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. pp.375-379, ⟨10.1109/ISBI48211.2021.9433951⟩.
• 2020
  Suvadip Mukherjee; Thibault Lagache; Jean-Christophe Olivo-Marin , Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index, IEEE Transactions on Image Processing, vol. 30, pp. 386-401, 2021.
• 2020
  Mukherjee S, Lagache T, Olivo-Marin JC, Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index., IEEE Trans Image Process 2021 ; 30(): 386-401.
• 2020
  Thibault Lagache, Alison Hanson, Adrienne Fairhall, Rafael Yuste, Robust single neuron tracking of calcium imaging in behaving Hydra, 2020.
• 2020
  Suvadip Mukherjee, Catalina Gonzalez-Gomez, Lydia Danglot, Thibault Lagache, Jean-Christophe Olivo-Marin, Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging, IEEE Signal Processing Letters, 2020, 27, pp.1085-1089. ⟨10.1109/LSP.2020.3003821⟩.
• 2019
  Lagache T, Jayant K, Yuste R, Electrodiffusion models of synaptic potentials in dendritic spines., J Comput Neurosci 2019 Aug; 47(1): 77-89.
• 2019
  Demarta-Gatsi C, Rivkin A, Di Bartolo V, Peronet R, Ding S, Commere PH, Guillonneau F, Bellalou J, Brûlé S, Abou Karam P, Cohen SR, Lagache T, Janse CJ, Regev-Rudzki N, Mécheri S, Histamine releasing factor and elongation factor 1 alpha secreted via malaria parasites extracellular vesicles promote immune evasion by inhibiting specific T cell responses., Cell Microbiol 2019 Jul; 21(7): e13021.
• 2019
  de Chaumont F, Ey E, Torquet N, Lagache T, Dallongeville S, Imbert A, Legou T, Le Sourd AM, Faure P, Bourgeron T, Olivo-Marin JC, Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning., Nat Biomed Eng 2019 Nov; 3(11): 930-942.
• 2019
  Thibault Lagache, Krishna Jayant, Rafael Yuste, Electrodiffusion models of synaptic potentials in dendritic spines, Journal of Computational Neuroscience, 2019, 47 (1), pp.77-89. ⟨10.1007/s10827-019-00725-5⟩.
• 2018
  Lagache T, Grassart A, Dallongeville S, Faklaris O, Sauvonnet N, Dufour A, Danglot L, Olivo-Marin JC, Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics., Nat Commun 2018 Feb; 9(1): 698.
• 2018
  Bertot L, Grassart A, Lagache T, Nardi G, Basquin C, Olivo-Marin JC, Sauvonnet N, Quantitative and Statistical Study of the Dynamics of Clathrin-Dependent and -Independent Endocytosis Reveal a Differential Role of EndophilinA2., Cell Rep 2018 Feb; 22(6): 1574-1588.
• 2017
  Escoll P, Song OR, Viana F, Steiner B, Lagache T, Olivo-Marin JC, Impens F, Brodin P, Hilbi H, Buchrieser C, Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages., Cell Host Microbe 2017 Sep; 22(3): 302-316.e7.
• 2017
  Thibault Lagache, Christian Sieben, Tim Meyer, Andreas Herrmann, David Holcman, Stochastic Model of Acidification, Activation of Hemagglutinin and Escape of Influenza Viruses from an Endosome, Frontiers in Physics, 2017, 5, ⟨10.3389/fphy.2017.00025⟩.
• 2017
  Thibault Lagache, D. Holcman, Extended Narrow Escape with Many Windows for Analyzing Viral Entry into the Cell Nucleus, Journal of Statistical Physics, 2017, 166 (2), pp.244-266. ⟨10.1007/s10955-016-1691-9⟩.
• 2016
  Alessandro Pagliuso, To Nam Tham, Julia K Stevens, Thibault Lagache, Roger Persson, Audrey Salles, Jean‐christophe Olivo‐marin, Stéphane Oddos, Anne Spang, Pascale Cossart, Fabrizia Stavru, A role for septin 2 in Drp1-mediated mitochondrial fission., EMBO Reports, 2016, 17 (6), pp.858-73. ⟨10.15252/embr.201541612⟩.
• 2015
  Basquin C, Trichet M, Vihinen H, Malardé V, Lagache T, Ripoll L, Jokitalo E, Olivo-Marin JC, Gautreau A, Sauvonnet N, Membrane protrusion powers clathrin-independent endocytosis of interleukin-2 receptor., EMBO J 2015 Aug; 34(16): 2147-61.
• 2015
  Lagache T, Sauvonnet N, Danglot L, Olivo-Marin JC, Statistical analysis of molecule colocalization in bioimaging., Cytometry A 2015 Jun; 87(6): 568-79.
• 2015
  Li MY, Grandadam M, Kwok K, Lagache T, Siu YL, Zhang JS, Sayteng K, Kudelko M, Qin CF, Olivo-Marin JC, Bruzzone R, Wang PG, KDEL Receptors Assist Dengue Virus Exit from the Endoplasmic Reticulum., Cell Rep 2015 Mar; 10(9): 1496-1507.
• 2015
  Santi-Rocca J, Chenouard N, Fort C, Lagache T, Olivo-Marin JC, Bastin P, Imaging intraflagellar transport in trypanosomes., Methods Cell Biol 2015 ; 127(): 487-508.
• 2014
  Boissan M, Montagnac G, Shen Q, Griparic L, Guitton J, Romao M, Sauvonnet N, Lagache T, Lascu I, Raposo G, Desbourdes C, Schlattner U, Lacombe ML, Polo S, van der Bliek AM, Roux A, Chavrier P, Membrane trafficking. Nucleoside diphosphate kinases fuel dynamin superfamily proteins with GTP for membrane remodeling., Science 2014 Jun; 344(6191): 1510-5.
• 2014
  Soyer M, Charles-Orszag A, Lagache T, Machata S, Imhaus AF, Dumont A, Millien C, Olivo-Marin JC, Duménil G, Early sequence of events triggered by the interaction of Neisseria meningitidis with endothelial cells., Cell Microbiol 2014 Jun; 16(6): 878-95.
• 2013
  Lagache T, Lang G, Sauvonnet N, Olivo-Marin JC, Analysis of the spatial organization of molecules with robust statistics., PLoS One 2013 ; 8(12): e80914.
• 2012
  Johanna Buisson, Nicolas Chenouard, Thibault Lagache, Thierry Blisnick, Jean-Christophe Olivo-Marin, Philippe Bastin, Intraflagellar transport proteins cycle between the flagellum and its base, Journal of Cell Science, 2013, 126 (1), pp.327-338. ⟨10.1242/jcs.117069⟩.
• 2012
  Mounier J, Boncompain G, Senerovic L, Lagache T, Chrétien F, Perez F, Kolbe M, Olivo-Marin JC, Sansonetti PJ, Sauvonnet N, Shigella effector IpaB-induced cholesterol relocation disrupts the Golgi complex and recycling network to inhibit host cell secretion, Cell Host Microbe 2012 Sep;12(3):381-9.
• 2012
  Fabrice de Chaumont, Stéphane Dallongeville, Nicolas Chenouard, Nicolas Hervé, Sorin Pop, Thomas Provoost, Vannary Meas-Yedid, Praveen Pankajakshan, Timothée Lecomte, Yoann Le Montagner, Thibault Lagache, Alexandre Dufour, Jean-Christophe Olivo-Marin, Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 2012, 9 (7), pp.690-696. ⟨10.1038/nmeth.2075⟩.
• 2012
  Lagache T, Danos O, Holcman D, Modeling the step of endosomal escape during cell infection by a nonenveloped virus, Biophys. J. 2012 Mar;102(5):980-9.
• 2009
  Lagache T, Dauty E, Holcman D, Quantitative analysis of virus and plasmid trafficking in cells, Phys Rev E Stat Nonlin Soft Matter Phys 2009 Jan;79(1 Pt 1):011921.
• 2008
  Lagache T, Holcman D, Quantifying intermittent transport in cell cytoplasm, Phys Rev E Stat Nonlin Soft Matter Phys 2008 Mar;77(3 Pt 1):030901.