-
2024Interrogating Aptamer Chemical Space Through Modified Nucleotide Substitution Facilitated by Enzymatic DNA Synthesis, ChemBioChem 2024, 25, e202300539.
-
2022Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution., Biomolecules 2022 Sep; 12(9): .
-
2021Advanced In Vivo Cross-Linking Mass Spectrometry Platform to Characterize Proteome-Wide Protein Interactions., Anal Chem 2021 Feb; (): .
-
2019Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling, Structure 27 (2019) 175-188.
-
2018Simultaneous Determination of Protein Structure and Dynamics Using Cryo-Electron Microscopy, Biophys. J. 2018 Apr;114(7):1604-1613.
-
2018Integrative structure and functional anatomy of a nuclear pore complex, Nature 2018 03;555(7697):475-482.
-
2018Integrative structure modeling with the Integrative Modeling Platform, Protein Sci. 2018 01;27(1):245-258.
-
2017Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5, Cell Rep 2017 03;18(11):2651-2663.
-
2016A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions, J Phys Chem B 2017 04;121(15):3493-3501.
-
2016Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform, Volume 167, Issue 5, p1215–1228.e25.
-
2016Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform, Cell 2016 11;167(5):1215-1228.e25.
-
2016Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling, Mol. Cell Proteomics 2016 08;15(8):2730-43.
-
2015Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH, Mol. Cell 2015 Sep;59(5):794-806.
-
2014Uncertainty in integrative structural modeling, Curr. Opin. Struct. Biol. 2014 Oct;28:96-104.
-
2014Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex, Cell 2014 Aug;158(5):1123-35.
-
2014Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex, Mol. Cell Proteomics 2014 Nov;13(11):2927-43.
-
2014Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling, J. Mol. Biol. 2014 Nov;426(22):3713-28.
-
2014Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data, Mol. Cell Proteomics 2014 Nov;13(11):2812-23.
-
2014Cys-scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ, Structure 2014 Sep;22(9):1239-1251.
-
2014Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway, Mol. Cell Proteomics 2014 Nov;13(11):2855-70.
-
2014Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone, J. Mol. Biol. 2014 Jun;426(12):2393-404.
-
2014Modeling of proteins and their assemblies with the Integrative Modeling Platform, Methods Mol. Biol. 2014;1091:277-95.
-
2013Methylations of tryptophan-modified naphthoquinone affect its inhibitory potential toward Aβ aggregation, J Phys Chem B 2013 Feb;117(6):1780-9.
-
2012Optimization of designed armadillo repeat proteins by molecular dynamics simulations and NMR spectroscopy, Protein Sci. 2012 Sep;21(9):1298-314.
-
2012Photocontrol of reversible amyloid formation with a minimal-design peptide, J Phys Chem B 2012 Aug;116(30):8961-73.
-
2011Structural basis for inhibiting β-amyloid oligomerization by a non-coded β-breaker-substituted endomorphin analogue, ACS Chem. Biol. 2011 Nov;6(11):1265-76.
-
2010Amyloid fibril polymorphism is under kinetic control, J. Am. Chem. Soc. 2010 Oct;132(42):14960-70.
-
2010Complete phenotypic recovery of an Alzheimer’s disease model by a quinone-tryptophan hybrid aggregation inhibitor, PLoS ONE 2010;5(6):e11101.
-
2009How does a simplified-sequence protein fold?, Biophys. J. 2009 Sep;97(6):1737-46.
-
20099,10-Anthraquinone hinders beta-aggregation: how does a small molecule interfere with Abeta-peptide amyloid fibrillation?, Protein Sci. 2009 Apr;18(4):792-800.
-
2008Amyloid aggregation on lipid bilayers and its impact on membrane permeability, J. Mol. Biol. 2009 Mar;387(2):407-15.
-
2007Designed armadillo repeat proteins as general peptide-binding scaffolds: consensus design and computational optimization of the hydrophobic core, J. Mol. Biol. 2008 Mar;376(5):1282-304.
-
2007Pathways and intermediates of amyloid fibril formation, J. Mol. Biol. 2007 Dec;374(4):917-24.
-
2006Interpreting the aggregation kinetics of amyloid peptides, J. Mol. Biol. 2006 Jul;360(4):882-92.
-
2005Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences, Protein Sci. 2005 Oct;14(10):2723-34.
-
2005Organism complexity anti-correlates with proteomic beta-aggregation propensity, Protein Sci. 2005 Oct;14(10):2735-40.
-
2004Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations, J. Am. Chem. Soc. 2004 Nov;126(46):15277-86.
-
2004The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates, Protein Sci. 2004 Jul;13(7):1939-41.