• 2020
  Kazlauskas D, Krupovic M, Guglielmini J, Forterre P, Venclovas Č, Diversity and evolution of B-family DNA polymerases, Nucleic Acids Res 2020 Oct; 48(18): 10142-10156.
• 2020
  Guglielmini J, Woo AC, Krupovic M, Forterre P, Gaia M, Reply to Ku and Sun: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes, Proc. Natl. Acad. Sci. U.S.A. 2020 Feb;117(6):2749-2750.
• 2020
  Baidaliuk A, Lequime S, Moltini-Conclois I, Dabo S, Dickson LB, Prot M, Duong V, Dussart P, Boyer S, Shi C, Matthijnssens J, Guglielmini J, Gloria-Soria A, Simon-Lorière E, Lambrechts L, , Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations., Virus Evol 2020 Jan; 6(1): veaa018.
• 2019
  Savin C, Criscuolo A, Guglielmini J, Le Guern AS, Carniel E, Pizarro-Cerdá J, Brisse S, Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization, Microb Genom 2019 Oct;.
• 2019
  Guglielmini J, Woo AC, Krupovic M, Forterre P, Gaia M, Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes, Proc. Natl. Acad. Sci. U.S.A. 2019 Sep;116(39):19585-19592.
• 2019
  Singh P, Alaganan A, More KR, Lorthiois A, Thiberge S, Gorgette O, Guillotte Blisnick M, Guglielmini J, Aguilera SS, Touqui L, Singh S, Chitnis CE, , Role of a patatin-like phospholipase in Plasmodium falciparum gametogenesis and malaria transmission., 2019 08; 116(35): 17498-17508.
• 2019
  Bigot T, Guglielmini J, Criscuolo A, Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences, Data Brief 25:104212.
• 2019
  Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M, Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance, PLoS Negl Trop Dis 2019 Apr;13(4):e0007374.
• 2018
  Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S, Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough, Emerging Infect. Dis. 2018 Jun;24(6):988-994.
• 2017
  Lago M, Monteil V, Douche T, Guglielmini J, Criscuolo A, Maufrais C, Matondo M, Norel F, , Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation., Sci Rep 2017 05; 7(1): 2127.
• 2016
  Sophie S. Abby, Jean Cury, Julien Guglielmini, Bertrand Néron, Marie Touchon & Eduardo P. C. Rocha, Identification of protein secretion systems in bacterial genomes, Scientific Reports 6, 23080 (2016).
• 2016
  Bidet P, Basmaci R, Guglielmini J, Doit C, Jost C, Birgy A, Bonacorsi S, Genome Analysis of Kingella kingae Strain KWG1 Reveals How a β-Lactamase Gene Inserted in the Chromosome of This Species, Antimicrob. Agents Chemother. 2015;60(1):703-8.
• 2015
  Xue H, Cordero OX, Camas FM, Trimble W, Meyer F, Guglielmini J, Rocha EP, Polz MF, Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations, MBio 2015;6(3):e00552-15.
• 2014
  Sanderson-Smith M, De Oliveira DM, Guglielmini J, McMillan DJ, Vu T, Holien JK, Henningham A, Steer AC, Bessen DE, Dale JB, Curtis N, Beall BW, Walker MJ, Parker MW, Carapetis JR, Van Melderen L, Sriprakash KS, Smeesters PR, , A systematic and functional classification of Streptococcus pyogenes that serves as a new tool for molecular typing and vaccine development, J. Infect. Dis. 2014 Oct;210(8):1325-38.
• 2014
  Guglielmini J, Néron B, Abby SS, Garcillán-Barcia MP, de la Cruz F, Rocha EP, Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion, Nucleic Acids Res. 2014 May;42(9):5715-27.
• 2013
  McMillan DJ, Drèze PA, Vu T, Bessen DE, Guglielmini J, Steer AC, Carapetis JR, Van Melderen L, Sriprakash KS, Smeesters PR, Updated model of group A Streptococcus M proteins based on a comprehensive worldwide study, Clin. Microbiol. Infect. 2013 May;19(5):E222-9.
• 2012
  Guglielmini J, de la Cruz F, Rocha EP, Evolution of conjugation and type IV secretion systems, Mol. Biol. Evol. 2013 Feb;30(2):315-31.
• 2011
  Guglielmini J, Van Melderen L, Bacterial toxin-antitoxin systems: Translation inhibitors everywhere, Mob Genet Elements 2011 Nov;1(4):283-290.
• 2011
  Guglielmini J, Quintais L, Garcillán-Barcia MP, de la Cruz F, Rocha EP, The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation, PLoS Genet. 2011 Aug;7(8):e1002222.
• 2011
  Leplae R, Geeraerts D, Hallez R, Guglielmini J, Drèze P, Van Melderen L, Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families, Nucleic Acids Res. 2011 Jul;39(13):5513-25.
• 2011
  Henquell C, Guglielmini J, Verbeeck J, Mahul A, Thibault V, Lebray P, Laperche S, Trimoulet P, Foucher J, Le Guillou-Guillemette H, Fouchard-Hubert I, Legrand-Abravanel F, Métivier S, Gaudy C, D'Alteroche L, Rosenberg AR, Podevin P, Plantier JC, Riachi G, Saoudin H, Coppere H, André E, Gournay J, Feray C, Vallet S, Nousbaum JB, Baazia Y, Roulot D, Alain S, Loustaud-Ratti V, Schvoerer E, Habersetzer F, Pérez-Serra RJ, Gourari S, Mirand A, Odent-Malaure H, Garraud O, Izopet J, Bommelaer G, Peigue-Lafeuille H, van Ranst M, Abergel A, Bailly JL, Evolutionary history of hepatitis C virus genotype 5a in France, a multicenter ANRS study, Infect. Genet. Evol. 2011 Mar;11(2):496-503.
• 2009
  Van Doninck K, Mandigo ML, Hur JH, Wang P, Guglielmini J, Milinkovitch MC, Lane WS, Meselson M, Phylogenomics of unusual histone H2A Variants in Bdelloid rotifers, PLoS Genet. 2009 Mar;5(3):e1000401.
• 2009
  Mine N, Guglielmini J, Wilbaux M, Van Melderen L, The decay of the chromosomally encoded ccdO157 toxin-antitoxin system in the Escherichia coli species, Genetics 2009 Apr;181(4):1557-66.
• 2008
  Guglielmini J, Szpirer C, Milinkovitch MC, Automated discovery and phylogenetic analysis of new toxin-antitoxin systems, BMC Microbiol. 2008;8:104.