• 2023
  Smith DRM, Chervet S, Pinettes T, Shirreff G, Jijón S, Oodally A, Jean K, Opatowski L, Kernéis S, Temime L, How have mathematical models contributed to understanding the transmission and control of SARS-CoV-2 in healthcare settings? A systematic search and review., J Hosp Infect 2023 Nov; 141(): 132-141.
• 2023
  Smith DRM, Shirreff G, Temime L, Opatowski L, Collateral impacts of pandemic COVID-19 drive the nosocomial spread of antibiotic resistance: A modelling study., PLoS Med 2023 Jun; 20(6): e1004240.
• 2023
  Smith DRM, Jijón S, Oodally A, Shirreff G, Aït Bouziad K, Ante-Testard PA, Bastard J, Bouziri H, Daouda OS, Duchemin T, Godon-Rensonnet AS, Henriot P, Houri Y, Neynaud H, Perozziello A, Thonon F, Crépey P, Dab W, Jean K, Temime L, Sick leave due to COVID-19 during the first pandemic wave in France, 2020., Occup Environ Med 2023 May; 80(5): 268-272.
• 2022
  Jijón S, Al Shafie A, Hassan E, , Temime L, Jean K, El-Kassas M, Estimating the risk of incident SARS-CoV-2 infection among healthcare workers in quarantine hospitals: the Egyptian example., Sci Rep 2022 Nov; 12(1): 19773.
• 2022
  Shirreff G, Zahar JR, Cauchemez S, Temime L, Opatowski L, Measuring Basic Reproduction Number to Assess Effects of Nonpharmaceutical Interventions on Nosocomial SARS-CoV-2 Transmission., Emerg Infect Dis 2022 Jul; 28(7): 1345-1354.
• 2022
  Smith DRM, Duval A, Zahar JR, , Opatowski L, Temime L, Rapid antigen testing as a reactive response to surges in nosocomial SARS-CoV-2 outbreak risk., Nat Commun 2022 Jan; 13(1): 236.
• 2020
  Raman J, Gast L, Balawanth R, Tessema S, Brooke B, Maharaj R, Munhenga G, Tshikae P, Lakan V, Mwamba T, Makowa H, Sangweni L, Mkhabela M, Zondo N, Mohulatsi E, Nyawo Z, Ngxongo S, Msimang S, Dagata N, Greenhouse B, Birkholtz LM, Shirreff G, Graffy R, Qwabe B, Moonasar D, High levels of imported asymptomatic malaria but limited local transmission in KwaZulu-Natal, a South African malaria-endemic province nearing malaria elimination., Malar J 2020 Apr; 19(1): 152.
• 2019
  Davies C, Graffy R, Shandukani M, Baloyi E, Gast L, Kok G, Mbokazi F, Zita A, Zwane M, Magagula R, Mabuza A, Ramkrishna W, Morris N, Porteous J, Shirreff G, Blumberg L, Misiani E, Moonasar D, Effectiveness of 24-h mobile reporting tool during a malaria outbreak in Mpumalanga Province, South Africa., Malar J 2019 Feb; 18(1): 45.
• 2018
  Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S, Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics., PLoS Pathog 2018 Feb; 14(2): e1006895.
• 2017
  Shirreff G, Wadood MZ, Vaz RG, Sutter RW, Grassly NC, Estimated Effect of Inactivated Poliovirus Vaccine Campaigns, Nigeria and Pakistan, January 2014-April 2016., Emerg Infect Dis 2017 Feb; 23(2): 258-263.
• 2016
  White MT, Shirreff G, Karl S, Ghani AC, Mueller I, Variation in relapse frequency and the transmission potential of Plasmodium vivax malaria., Proc Biol Sci 2016 Mar; 283(1827): 20160048.
• 2014
  Fraser C, Lythgoe K, Leventhal GE, Shirreff G, Hollingsworth TD, Alizon S, Bonhoeffer S, Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective., Science 2014 Mar; 343(6177): 1243727.
• 2013
  Shirreff G, Alizon S, Cori A, Günthard HF, Laeyendecker O, van Sighem A, Bezemer D, Fraser C, How effectively can HIV phylogenies be used to measure heritability?, Evol Med Public Health 2013 Jan; 2013(1): 209-24.
• 2011
  Shirreff G, Pellis L, Laeyendecker O, Fraser C, Transmission selects for HIV-1 strains of intermediate virulence: a modelling approach., PLoS Comput Biol 2011 Oct; 7(10): e1002185.
• 2010
  Hollingsworth TD, Laeyendecker O, Shirreff G, Donnelly CA, Serwadda D, Wawer MJ, Kiwanuka N, Nalugoda F, Collinson-Streng A, Ssempijja V, Hanage WP, Quinn TC, Gray RH, Fraser C, HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda., PLoS Pathog 2010 May; 6(5): e1000876.