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2025Template Learning: Deep learning with domain randomization for particle picking in cryo-electron tomography., Nat Commun 2025 Oct; 16(1): 8833.
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2023MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package., Int J Mol Sci 2023 Dec; 25(1): .
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2023Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM., Acta Crystallogr D Struct Biol 2023 Jul; 79(Pt 7): 569-584.
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2023MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation., J Mol Biol 2023 May; 435(9): 167951.
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2022ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data., J Struct Biol 2022 Dec; 214(4): 107906.
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2022ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation., J Struct Biol 2022 Sep; 214(3): 107872.
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2022TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow., J Mol Biol 2022 Jan; 434(2): 167381.
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2021Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion., Molecules 2021 Oct; 26(20): .
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2021HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes., Front Mol Biosci 2021 ; 8(): 663121.
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2020Hybrid Electron Microscopy Normal Mode Analysis with Scipion., Protein Sci 2020 Jan; 29(1): 223-236.
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