GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 6134,
label: 'Dynamique des interactions hôte-pathogène',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_453295a-f1.2-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=13
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8308,
label: 'Laurence Langlais',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_laurencelanglais-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/laurence-langlais/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61348308,
size: 0.5,
source: 6134,
target: 8308 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8309,
label: 'Laurent Audry',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/laurent-audry/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61348309,
size: 0.5,
source: 6134,
target: 8309 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4242,
label: 'Patricia Latour-Lambert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_latourlambert-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/patricia-latour-lambert/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61344242,
size: 0.5,
source: 6134,
target: 4242 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4236,
label: 'Laura Barrio Cano',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_laurabarrio-131x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/laura-barrio-cano/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61344236,
size: 0.5,
source: 6134,
target: 4236 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 78120,
label: 'Magdalena Gil-Tarán',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/12/research.pasteur.fr_maggie-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/magdalena-gil-taran/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 613478120,
size: 0.5,
source: 6134,
target: 78120 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 70061,
label: 'Sonja Kuhn',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_ben9278be-cut-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/sonja-kuhn/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 613470061,
size: 0.5,
source: 6134,
target: 70061 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 73642,
label: 'Yuen Yan Chang',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/06/research_pasteur-profile_pic2-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/yuen-yan-chang/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 613473642,
size: 0.5,
source: 6134,
target: 73642 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 123292,
label: 'Camila Valenzuela-Montenegro',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-img_6998-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/camila-valenzuela-montenegro/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6134123292,
size: 0.5,
source: 6134,
target: 123292 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 78112,
label: 'Chak Hon LUK',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/10/research.pasteur.fr_jakson-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/chak-hon-luk/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 613478112,
size: 0.5,
source: 6134,
target: 78112 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 100514,
label: 'Lisa Sanchez',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/lisa-sanchez/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6134100514,
size: 0.5,
source: 6134,
target: 100514 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 120295,
label: 'Lea Swistak',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-lea-swistak-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/lea-swistak/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6134120295,
size: 0.5,
source: 6134,
target: 120295 });
//check if content already exist
x_site = Math.cos(2 * 11 * Math.PI / N) * 2;
y_site = Math.sin(2 * 11 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 128269,
label: 'Arthur Bienvenu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-img_0483-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/arthur-bienvenu/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6134128269,
size: 0.5,
source: 6134,
target: 128269 });
//check if content already exist
x_site = Math.cos(2 * 12 * Math.PI / N) * 2;
y_site = Math.sin(2 * 12 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4237,
label: 'Jost Enninga',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_jost2015-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/jost-enninga/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61344237,
size: 0.5,
source: 6134,
target: 4237 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=14
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 105543,
label: 'EVENT: Pasteur-Weizmann Council Seminar hosted by the Department of Cell Biology and infection – “Characterizing the Host-pathogen Crosstalk at Early Stages of Infection”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/event/bci-seminar-weizmann-institute-of-sciences-seminar-characterizing-the-host-pathogen-crosstalk-at-early-stages-of-infection-by-roi-avraham/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6134105543,
size: 0.5,
source: 6134,
target: 105543 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4237) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1055434237,
size: 0.5,
source: 105543,
target: 4237 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4987,
label: 'Chiara Zurzolo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-chiara-zurzolo-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/chiara-zurzolo/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1055434987,
size: 0.5,
source: 105543,
target: 4987 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 102865,
label: 'EVENT: “Metabolism meets virulence: critical roles for host and bacterial metabolites during infections ” by Andrew Roe',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/event/metabolism-meets-virulence-critical-roles-host-bacterial-metabolites-infections-andrew-roe/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6134102865,
size: 0.5,
source: 6134,
target: 102865 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4118,
label: 'Hilde De Reuse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_hilde_de_reuse-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/hilde-de-reuse/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1028654118,
size: 0.5,
source: 102865,
target: 4118 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4237) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1028654237,
size: 0.5,
source: 102865,
target: 4237 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 98434,
label: 'EVENT: “Host cell colonization by Mycobacterium tuberculosis: recent insights on the early onset” – Priscille Brodin',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/event/host-cell-colonization-by-mycobacterium-tuberculosis-recent-insights-on-the-early-onset-priscille-brodin/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 613498434,
size: 0.5,
source: 6134,
target: 98434 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 51154,
label: 'Guillaume Dumenil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_research.pasteur.fr_fig101-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/guillaume-dumenil/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 9843451154,
size: 0.5,
source: 98434,
target: 51154 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4237) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 984344237,
size: 0.5,
source: 98434,
target: 4237 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 79846,
label: 'EVENT: Cell Biology and Infection Day – December 1, 2016 Institut Pasteur, Paris, France Amphithéâtre Duclaux',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_bci-day_advertisement-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/event/cell-biology-and-infection-day-december-1-2016-institut-pasteur-paris-france-amphitheatre-duclaux/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 613479846,
size: 0.5,
source: 6134,
target: 79846 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4987) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 798464987,
size: 0.5,
source: 79846,
target: 4987 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6368,
label: 'Giulia Manina',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_me2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/giulia-manina/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 798466368,
size: 0.5,
source: 79846,
target: 6368 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4242) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 798464242,
size: 0.5,
source: 79846,
target: 4242 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4247,
label: 'Cécile Leduc',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig12-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/cecile-leduc/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 798464247,
size: 0.5,
source: 79846,
target: 4247 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 78778,
label: 'EVENT: New insights into the regulation of inflammation during Shigella flexneri infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/10/research.pasteur.fr_3i_cecile-arrieumerlou-142x150.jpg',
page_url: 'https://research.pasteur.fr/fr/event/new-insights-into-the-regulation-of-inflammation-during-shigella-flexneri-infection/',
size: 24,
color: '#DDDDDD'
});
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 85643,
label: 'Inès Mouyokolo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/03/research.pasteur.fr_ines_mod-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/ines-mouyokolo/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2158985643,
size: 0.5,
source: 21589,
target: 85643 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6837,
label: 'Elodie Brient-Litzler',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-photoebl2019-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/elodie-brient-litzler/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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id: 215896837,
size: 0.5,
source: 21589,
target: 6837 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 388) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
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if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
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}
});
//link to content
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size: 0.5,
source: 21589,
target: 388 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7071,
label: 'Isabelle Buckle',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/isabelle-buckle/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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target: 7071 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4365,
label: 'Marie-Lise Gougeon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_marie-lise-gougeon-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/marie-lise-gougeon/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 215894365,
size: 0.5,
source: 21589,
target: 4365 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4107,
label: 'Christophe D’Enfert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/denfert_0-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/christophe-denfert/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 4987) {
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if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
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n.size = biggest_node_size;
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//link to content
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target: 4987 });
//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 4118) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
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g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4435,
label: 'Monique Lafon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_m-lafon-site-web-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/monique-lafon/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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size: 0.5,
source: 21589,
target: 4435 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2500,
label: 'Daniel Larzul',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/daniel-larzul/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 215892500,
size: 0.5,
source: 21589,
target: 2500 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4848,
label: 'Gérald Spaeth',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-spaeth-gerald-us-visa-format-numerique-900x900-px-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/gerald-spaeth/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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size: 0.5,
source: 21589,
target: 4848 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4204,
label: 'Françoise Dromer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/04/research_pasteur-phototetefd_042019-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/francoise-dromer/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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size: 0.5,
source: 21589,
target: 4204 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 21582,
label: 'PROGRAM_PROJECT: Milieu Intérieur [LabEx]',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_dsc-tb0313_01-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/program_project/milieu-interieur-labex/',
size: 24,
color: '#DDDDDD'
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//link content to central post
g.edges.push({
id: 613421582,
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source: 6134,
target: 21582 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 96962,
label: 'Julien Desclés',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/12/research_pasteur-profil2-150x150.png',
page_url: 'https://research.pasteur.fr/fr/member/julien-descles/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
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size: 0.5,
source: 21582,
target: 96962 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4715,
label: 'Lluis Quintana-Murci',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_quintana_photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/lluis-quintana-murci/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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size: 0.5,
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target: 4715 });
//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7844,
label: 'Darragh Duffy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo5-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/darragh-duffy/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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id: 215827844,
size: 0.5,
source: 21582,
target: 7844 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3982,
label: 'Philippe Bousso',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photopb-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/philippe-bousso/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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id: 215823982,
size: 0.5,
source: 21582,
target: 3982 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 23974,
label: 'Olivier Lantz',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig105-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/epartner/olivier-lantz/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2158223974,
size: 0.5,
source: 21582,
target: 23974 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 23983,
label: 'Antoine Toubert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig108-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/epartner/antoine-toubert/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2158223983,
size: 0.5,
source: 21582,
target: 23983 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 23972,
label: 'Serge Hercberg',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/epartner/serge-hercberg/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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id: 2158223972,
size: 0.5,
source: 21582,
target: 23972 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4180,
label: 'James Di Santo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_photojd-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/james-di-santo/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
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id: 215824180,
size: 0.5,
source: 21582,
target: 4180 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 71912,
label: '(EN) Jacques Fellay',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_jacques-fellay.png',
page_url: 'https://research.pasteur.fr/fr/epartner/jacques-fellay/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2158271912,
size: 0.5,
source: 21582,
target: 71912 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 71909,
label: '(EN) Kalle Astrom',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_kalle-astrom-150x150.png',
page_url: 'https://research.pasteur.fr/fr/epartner/kalle-astrom/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2158271909,
size: 0.5,
source: 21582,
target: 71909 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 15,
label: 'DEPARTMENT: Biologie cellulaire et infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cells_under_a_microscope-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/department/cell-biology-infection/',
size: 24,
color: '#DDDDDD'
});
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g.edges.push({
id: 613415,
size: 0.5,
source: 6134,
target: 15 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 107500,
label: 'Gessyca Geoffroy',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/gessyca-geoffroy/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 15107500,
size: 0.5,
source: 15,
target: 107500 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4470,
label: 'Marc Lecuit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-sans-titre-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/marc-lecuit/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 154470,
size: 0.5,
source: 15,
target: 4470 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 51154) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6134) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1551154,
size: 0.5,
source: 15,
target: 51154 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});