GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4421,
label: 'Martial Marbouty',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-martial-marbouty-fullsizerender-150x150.jpeg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=10
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 210695,
label: 'PROJECT: AFRIBIOTA 2',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/project/210695/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4421210695,
size: 0.5,
source: 4421,
target: 210695,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 197302,
label: 'Jean-Marc Collard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/02/research_pasteur-jean-marc-collard-jean-marc-collard-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/jean-marc-collard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 210695197302,
size: 0.5,
source: 210695,
target: 197302 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 75605,
label: 'Violeta Moya Alvarez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/08/research_pasteur-violeta-moya-alvarez-violeta-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/violeta-moya-alvarez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 21069575605,
size: 0.5,
source: 210695,
target: 75605 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4418,
label: 'Romain Koszul',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_romain-koszul-sc201-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/romain-koszul/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2106954418,
size: 0.5,
source: 210695,
target: 4418 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2106954421,
size: 0.5,
source: 210695,
target: 4421 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 72419,
label: 'Emmanuel Nakouné',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/riip_member/emmanuel-nakoune/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 21069572419,
size: 0.5,
source: 210695,
target: 72419 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 11481,
label: 'Alexandre Manirakiza',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-alexandre-manirakiza_4-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/riip_member/alexandre-manirakiza/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 21069511481,
size: 0.5,
source: 210695,
target: 11481 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4780,
label: 'Philippe Sansonetti',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_philippe-sansonetti-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/philippe-sansonetti__trashed/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2106954780,
size: 0.5,
source: 210695,
target: 4780 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4794,
label: 'Pascale Vonasch',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_pascale1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/pascale-vonasch/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2106954794,
size: 0.5,
source: 210695,
target: 4794 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 193985,
label: 'PROGRAM_PROJECT: Microbiotalogie',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/program_project/microbiotalogy/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4421193985,
size: 0.5,
source: 4421,
target: 193985,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 58995,
label: 'Mallory Perrin-Wolff',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-mallory-perrin-wolff-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/mallory-perrin-wolff/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 19398558995,
size: 0.5,
source: 193985,
target: 58995 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 187008,
label: 'Elodie Dandelot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/09/research_pasteur-elodie-dandelot-1516808045836-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/elodie-dandelot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 193985187008,
size: 0.5,
source: 193985,
target: 187008 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4225,
label: 'Gérard Eberl',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_eberl-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/gerard-eberl/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1939854225,
size: 0.5,
source: 193985,
target: 4225 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 102850,
label: 'Marion Berard',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/marion-berard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 193985102850,
size: 0.5,
source: 193985,
target: 102850 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4282,
label: 'Laurent Debarbieux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_ld-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/laurent-debarbieux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1939854282,
size: 0.5,
source: 193985,
target: 4282 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4094,
label: 'Javier Pizarro-Cerda',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-javier-pizarro-cerda-javier-pizarro-1300-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/javier-pizarro-cerda/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1939854094,
size: 0.5,
source: 193985,
target: 4094 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2669,
label: 'Sean Kennedy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/Kennedy-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/sean-kennedy/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1939852669,
size: 0.5,
source: 193985,
target: 2669 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 194664,
label: 'TEAM: Organisation et dynamiques des génomes viraux',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-enorganization-and-dynamics-of-viral-genomesfrorganisation-et-dynamiques-des-genomes-viraux-institutpasteur-i04324-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/team/organization-and-dynamics-of-viral-genomes/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4421194664,
size: 0.5,
source: 4421,
target: 194664,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 121143,
label: 'Amaury Bignaud',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-amaury-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/amaury-bignaud/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 194664121143,
size: 0.5,
source: 194664,
target: 121143 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 157879,
label: 'Devon Conti',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/04/research_pasteur-devon-conti-screenshot-2022-01-16-at-17.58.20-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/devon-conti/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 194664157879,
size: 0.5,
source: 194664,
target: 157879 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1946644421,
size: 0.5,
source: 194664,
target: 4421 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 170804,
label: 'NEWS: Romain Koszul and Martial Marbouty discuss the use of 3C to understand phage-bacteria interaction on La Méthode Scientifique – France Culture',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/romain-kozul-and-martial-marbouty-discuss-the-use-of-3c-in-understanding-phage-bacteria-interaction-on-la-methode-scientifique-france-culture/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4421170804,
size: 0.5,
source: 4421,
target: 170804,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4418) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1708044418,
size: 0.5,
source: 170804,
target: 4418 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1708044421,
size: 0.5,
source: 170804,
target: 4421 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 169440,
label: 'NEWS: Back on: Science Outreach during the Departmental retreat in Pornichet 2021',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/back-on-science-outreach-during-the-departmental-retreat-in-pornichet-2021/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4421169440,
size: 0.5,
source: 4421,
target: 169440,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 157672,
label: 'Olivier Cordin',
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 120747,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 144615120747,
size: 0.5,
source: 144615,
target: 120747 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1446154421,
size: 0.5,
source: 144615,
target: 4421 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4418) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1446154418,
size: 0.5,
source: 144615,
target: 4418 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 88823,
label: 'EVENT: « Joint analysis of multiple phenotypes using GWAS summary statistics» by Hugues ASCHARD',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/event/joint-analysis-of-multiple-phenotypes-using-gwas-summary-statistics-by-hugues-aschard/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
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size: 0.5,
source: 4421,
target: 88823,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4407) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 888234407,
size: 0.5,
source: 88823,
target: 4407 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 888234421,
size: 0.5,
source: 88823,
target: 4421 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 25653,
label: 'Olaya Rendueles-Garcia',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-photo_olaya2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/olaya-rendueles-garcia/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 8882325653,
size: 0.5,
source: 88823,
target: 25653 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4009,
label: 'Carmen Buchrieser',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_carmen1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/carmen-buchrieser/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 888234009,
size: 0.5,
source: 88823,
target: 4009 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 44044,
label: 'SOFTWARE: GRAAL: genome assembly from chromosome contact frequencies',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_graal-150x150.png',
page_url: 'https://research.pasteur.fr/fr/software/graal-software-for-genome-assembly-from-chromosome-contact-frequencies/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
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id: 442144044,
size: 0.5,
source: 4421,
target: 44044,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 45155) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 4404445155,
size: 0.5,
source: 44044,
target: 45155 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4424) {
n.size = n.size + 8;
}
});
//link to content
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id: 440444424,
size: 0.5,
source: 44044,
target: 4424 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 440444421,
size: 0.5,
source: 44044,
target: 4421 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6939,
label: 'Nancy Guillen',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-nancy-guillen-nancy-150x150.png',
page_url: 'https://research.pasteur.fr/fr/member/nancy-guillen/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 440446939,
size: 0.5,
source: 44044,
target: 6939 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4977) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 440444977,
size: 0.5,
source: 44044,
target: 4977 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4418) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 440444418,
size: 0.5,
source: 44044,
target: 4418 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 17343,
label: 'SOFTWARE: META3C (MetaHiC), metaTOR',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_1409664514-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/software/meta3c-metahic/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
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size: 0.5,
source: 4421,
target: 17343,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4418) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 173434418,
size: 0.5,
source: 17343,
target: 4418 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 173434421,
size: 0.5,
source: 17343,
target: 4421 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 95663,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1734395663,
size: 0.5,
source: 17343,
target: 95663 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7730) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 173437730,
size: 0.5,
source: 17343,
target: 7730 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4424) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 173434424,
size: 0.5,
source: 17343,
target: 4424 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 6116,
label: 'TEAM: Régulation Spatiale des Génomes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_spatial-genome-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/team/spatial-regulation-of-genomes/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 44216116,
size: 0.5,
source: 4421,
target: 6116,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4421) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61164421,
size: 0.5,
source: 6116,
target: 4421 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4424) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61164424,
size: 0.5,
source: 6116,
target: 4424 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7050,
label: 'Florence Dumonteil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-florence-dumonteil-capture-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/florence-dumonteil/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61167050,
size: 0.5,
source: 6116,
target: 7050 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8375) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61168375,
size: 0.5,
source: 6116,
target: 8375 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137984) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6116137984,
size: 0.5,
source: 6116,
target: 137984 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 138451,
label: 'Léa Meneu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/01/research_pasteur-lea-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/lea-meneu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116138451,
size: 0.5,
source: 6116,
target: 138451 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 146490,
label: 'Jacques Serizay',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/jacques-serizay/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116146490,
size: 0.5,
source: 6116,
target: 146490 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175141,
label: 'Sébastien Gradit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/01/research_pasteur-sebastien-gradit-id-sg-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/sebastien-gradit/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116175141,
size: 0.5,
source: 6116,
target: 175141 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 188118,
label: 'Justine Groseille',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/10/research_pasteur-justine-groseille-img-8097-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/justine-groseille/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116188118,
size: 0.5,
source: 6116,
target: 188118 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 183886,
label: 'Manon Perrot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/07/research_pasteur-manon-perrot-index-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/manon-perrot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116183886,
size: 0.5,
source: 6116,
target: 183886 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 217419,
label: 'Theopisti Nikolaou',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/theopisti-nikolaou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116217419,
size: 0.5,
source: 6116,
target: 217419 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 217429,
label: 'Pauline Larrous',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/pauline-larrous/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116217429,
size: 0.5,
source: 6116,
target: 217429 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 222005,
label: 'Maëlys Delouis',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/03/research_pasteur-enmaelys-delouisfrmaelys-delouis-delouis-maelys-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/maelys-delouis/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116222005,
size: 0.5,
source: 6116,
target: 222005 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 234315,
label: 'Manuela Baquero Perez',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/manuela-baquero-perez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6116234315,
size: 0.5,
source: 6116,
target: 234315 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4418) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61164418,
size: 0.5,
source: 6116,
target: 4418 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});