GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4411,
label: 'Cosmin Saveanu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-cosmin-saveanu-img-20230106-112459small-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=11
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 233903,
label: 'COURSE: Multiple roles of RNAs',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/02/research_pasteur-multiple-roles-of-rnas-upfnetwork-150x150.png',
page_url: 'https://research.pasteur.fr/fr/course/multiple-roles-of-rnas/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4411233903,
size: 0.5,
source: 4411,
target: 233903,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57915,
label: 'Rachel Legendre',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-rachel-legendre-img-20201028-145758-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/rachel-legendre/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 23390357915,
size: 0.5,
source: 233903,
target: 57915 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7762,
label: 'Stevenn Volant',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_stevennvolant-150x150.png',
page_url: 'https://research.pasteur.fr/fr/member/stevenn-volant/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2339037762,
size: 0.5,
source: 233903,
target: 7762 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2339034411,
size: 0.5,
source: 233903,
target: 4411 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 917,
label: 'Odile Sismeiro',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/OdileSismeiro-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/odile-sismeiro/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 233903917,
size: 0.5,
source: 233903,
target: 917 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8323,
label: 'Laurence Decourty',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_laurence2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/laurence-decourty/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2339038323,
size: 0.5,
source: 233903,
target: 8323 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 190913,
label: 'NEWS: “RNA modifications and epitranscriptomics” – November 14th, 2023',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/rna-modifications-and-epitranscriptomics-november-14th-2023/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4411190913,
size: 0.5,
source: 4411,
target: 190913,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4535,
label: 'Zeynep Baharoglu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_zb-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/zeynep-baharoglu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1909134535,
size: 0.5,
source: 190913,
target: 4535 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 67565,
label: 'Sebastian Baumgarten',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_img_0098-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/sebastian-baumgarten/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 19091367565,
size: 0.5,
source: 190913,
target: 67565 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1909134411,
size: 0.5,
source: 190913,
target: 4411 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 187719,
label: 'EVENT: Symposium: RNA modifications and epitranscriptomics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/event/symposium-rna-modifications-and-epitranscriptomics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4411187719,
size: 0.5,
source: 4411,
target: 187719,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1877194535,
size: 0.5,
source: 187719,
target: 4535 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1877194411,
size: 0.5,
source: 187719,
target: 4411 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 67565) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18771967565,
size: 0.5,
source: 187719,
target: 67565 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 175708,
label: 'COURSE: Multiple roles of RNAs',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/02/research_pasteur-multiple-roles-of-rnas-upfnetwork-150x150.png',
page_url: 'https://research.pasteur.fr/fr/course/multiple-roles-of-rnas-2/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4411175708,
size: 0.5,
source: 4411,
target: 175708,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4406,
label: 'Gwenaël Badis-Breard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_badis-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/gwenael-badis-breard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1757084406,
size: 0.5,
source: 175708,
target: 4406 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1757084411,
size: 0.5,
source: 175708,
target: 4411 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 57915) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 17570857915,
size: 0.5,
source: 175708,
target: 57915 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7762) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1757087762,
size: 0.5,
source: 175708,
target: 7762 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 917) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 175708917,
size: 0.5,
source: 175708,
target: 917 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7199,
label: 'Hervé Waxin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_herve-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/herve-waxin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1757087199,
size: 0.5,
source: 175708,
target: 7199 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 169440,
label: 'NEWS: Back on: Science Outreach during the Departmental retreat in Pornichet 2021',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/back-on-science-outreach-during-the-departmental-retreat-in-pornichet-2021/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4411169440,
size: 0.5,
source: 4411,
target: 169440,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 157672,
label: 'Olivier Cordin',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/olivier-cordin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 169440157672,
size: 0.5,
source: 169440,
target: 157672 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4407,
label: 'Micheline Fromont-Racine',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_photos_mfr-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/micheline-fromont-racine/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1694404407,
size: 0.5,
source: 169440,
target: 4407 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4421,
label: 'Martial Marbouty',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-martial-marbouty-fullsizerender-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/martial-marbouty/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1694404421,
size: 0.5,
source: 169440,
target: 4421 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4533,
label: 'Céline Loot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_21712-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/celine-loot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1694404533,
size: 0.5,
source: 169440,
target: 4533 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4406) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1694404406,
size: 0.5,
source: 169440,
target: 4406 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 99732,
label: 'Amandine Nucci',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-screen-shot-2019-02-22-at-3.19.38-pm-150x150.png',
page_url: 'https://research.pasteur.fr/fr/member/amandine-nucci/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 16944099732,
size: 0.5,
source: 169440,
target: 99732 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4408,
label: 'Alain Jacquier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_identite-alain-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/alain-jacquier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1694404408,
size: 0.5,
source: 169440,
target: 4408 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4118,
label: 'Hilde De Reuse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_hilde_de_reuse-150x150.jpg',
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4017,
label: 'Christophe Rusniok',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_rusniok-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/christophe-rusniok/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
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source: 49392,
target: 4017 });
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if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
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target: 4411 });
//check if content already exist
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if (n.id == 4415) {
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target: 4415 });
// adding node
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var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 24331,
label: 'TEAM: Groupe: Dégradation de l’ARN et traduction',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_molecular-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/team/group-cosmin-saveanu/',
size: 35,
color: '#DDDDDD'
});
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target: 24331,
});
//check if content already exist
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if (n.id == 8323) {
n.size = n.size + 8;
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});
//link to content
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size: 0.5,
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target: 8323 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
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});
//link to content
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// adding node
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var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 24312,
label: 'TEAM: Biologie des ARN des Pathogènes Fongiques',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_i00638-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/team/rna-biology-of-fungal-pathogens/',
size: 35,
color: '#DDDDDD'
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 146175,
label: 'Jessie Colin',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/jessie-colin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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target: 146175 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
id: 8641,
label: 'Catherine Comte',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/catherine-comte/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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size: 0.5,
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target: 8641 });
//check if content already exist
// update node size depending on the amount of edges
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n.size = n.size + 8;
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});
//link to content
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id: 24312840,
size: 0.5,
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target: 840 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 118618,
label: 'Alícia Corbellini Piffer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-img-20181231-wa00244-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/alicia-corbellini-piffer/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 233604,
label: 'Tonia Dargham',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/tonia-dargham/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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source: 24312,
target: 233604 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8323) {
n.size = n.size + 8;
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});
//link to content
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id: 243128323,
size: 0.5,
source: 24312,
target: 8323 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 226468,
label: 'Cassandre Deculty',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/cassandre-deculty/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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target: 226468 });
//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 220417,
label: 'Shana Delfosse',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/shana-delfosse/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 24312220417,
size: 0.5,
source: 24312,
target: 220417 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 119254,
label: 'Benjamin Devauchelle',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-capture-decran-2019-03-01-a-14.34.49-150x150.png',
page_url: 'https://research.pasteur.fr/fr/member/fr-benjamin-devauchelle/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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size: 0.5,
source: 24312,
target: 119254 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 233601,
label: 'Keita Kayama',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/11/research_pasteur-enkeita-kayamafrkeita-kayama-img-3989-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/fr/member/keita-kayama/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 24312233601,
size: 0.5,
source: 24312,
target: 233601 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6822,
label: 'Corinne Maufrais',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig36-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/corinne-maufrais/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 243126822,
size: 0.5,
source: 24312,
target: 6822 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4450,
label: 'Isabelle Mouyna',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_isabelle-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/isabelle-mouyna/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 243124450,
size: 0.5,
source: 24312,
target: 4450 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8188,
label: 'Frédérique Moyrand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_moyrand-150x150.gif',
page_url: 'https://research.pasteur.fr/fr/member/frederique-moyrand/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 243128188,
size: 0.5,
source: 24312,
target: 8188 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8325,
label: 'Lucia Oreus',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_lucia-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/lucia-oreus/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 243128325,
size: 0.5,
source: 24312,
target: 8325 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 243124411,
size: 0.5,
source: 24312,
target: 4411 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4109,
label: 'Guilhem Janbon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-img_0255r-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/guilhem-janbon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 243124109,
size: 0.5,
source: 24312,
target: 4109 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 16336,
label: 'PROJECT: Non-sense mediated mRNA decay mechanisms',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_nmdfactorsoverview-150x150.png',
page_url: 'https://research.pasteur.fr/fr/project/gimnmd/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 441116336,
size: 0.5,
source: 4411,
target: 16336,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8323) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163368323,
size: 0.5,
source: 16336,
target: 8323 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4416,
label: 'Abdelkader Namane',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/?post_type=member&p=4416',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 163364416,
size: 0.5,
source: 16336,
target: 4416 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4406) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163364406,
size: 0.5,
source: 16336,
target: 4406 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 123368,
label: 'Agathe Gilbert',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/?post_type=member&p=123368',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 16336123368,
size: 0.5,
source: 16336,
target: 123368 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 117053,
label: 'Léna Audebert',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/?post_type=member&p=117053',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 16336117053,
size: 0.5,
source: 16336,
target: 117053 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163364411,
size: 0.5,
source: 16336,
target: 4411 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 16340,
label: 'PROJECT: Genome-wide genetic screens by GIM (Genetic Interactions Mapping)',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_ripples-150x150.gif',
page_url: 'https://research.pasteur.fr/fr/project/gimscreens/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 441116340,
size: 0.5,
source: 4411,
target: 16340,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4408) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163404408,
size: 0.5,
source: 16340,
target: 4408 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8323) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163408323,
size: 0.5,
source: 16340,
target: 8323 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4415) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163404415,
size: 0.5,
source: 16340,
target: 4415 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 163404411,
size: 0.5,
source: 16340,
target: 4411 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});