GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4138,
label: 'Marc Delarue',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_marc2-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 219807,
label: 'NEWS: Des moteurs moléculaires produisent l’énergie nécessaire pour nourrir les bactéries',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/des-moteurs-moleculaires-produisent-lenergie-necessaire-pour-nourrir-les-bacteries__trashed/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138219807,
size: 0.5,
source: 4138,
target: 219807,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2198074138,
size: 0.5,
source: 219807,
target: 4138 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4148,
label: 'Nadia Izadi-Pruneyre',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo_site-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/nadia-izadi-pruneyre/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2198074148,
size: 0.5,
source: 219807,
target: 4148 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4426,
label: 'Daniel Ladant',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_dl-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/daniel-ladant/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2198074426,
size: 0.5,
source: 219807,
target: 4426 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 200999,
label: 'PROJECT: DNA-binding mechanism and evolution of replication protein A',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/project/dna-binding-mechanism-and-evolution-of-replication-protein-a/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138200999,
size: 0.5,
source: 4138,
target: 200999,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 170355,
label: 'Markel Martinez Carranza',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/11/research_pasteur-markel-martinez-carranza-cropped1-scaled-e1650636496331-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/markel-martinez-carranza/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 200999170355,
size: 0.5,
source: 200999,
target: 170355 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 165873,
label: 'Maelenn Chevreuil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-maelenn-chevreuil-photo-cv-lm-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/maelenn-chevreuil/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 200999165873,
size: 0.5,
source: 200999,
target: 165873 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 1035,
label: 'Bertrand Raynal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/Bertrand1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/bertrand-raynal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2009991035,
size: 0.5,
source: 200999,
target: 1035 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 796,
label: 'Ahmed Haouz',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/04/ahmed-haouz-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/ahmed-haouz/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 200999796,
size: 0.5,
source: 200999,
target: 796 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2009994138,
size: 0.5,
source: 200999,
target: 4138 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4287,
label: 'Mart Krupovic',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-mart_krupovic-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/mart-krupovic/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2009994287,
size: 0.5,
source: 200999,
target: 4287 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4143,
label: 'Ludovic Sauguet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-ludovic-sauguet-photo-sauguet-ludovic-scaled-e1650635785861-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/ludovic-sauguet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2009994143,
size: 0.5,
source: 200999,
target: 4143 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 180406,
label: 'NEWS: Lauréats du prix de thèse 2022 de l’AFC : Darius Czernecki',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/news/laureats-du-prix-de-these-2022-de-lafc-darius-czernecki/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138180406,
size: 0.5,
source: 4138,
target: 180406,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1804064138,
size: 0.5,
source: 180406,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 158464,
label: 'PROGRAM_PROJECT: Initiative Cancer',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/05/research_pasteur-encancer-initiativefrinitiative-cancer-institutpasteur-i05997-axe-cancer-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/program_project/cancer-initiative/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138158464,
size: 0.5,
source: 4138,
target: 158464,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4176,
label: 'Ludovic Deriano',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/07/research.pasteur.fr_sans-titre-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/ludovic-deriano/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1584644176,
size: 0.5,
source: 158464,
target: 4176 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4246,
label: 'Sandrine Etienne-Manneville',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_sandrine_etienne-manneville-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/sandrine-etienne-manneville/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1584644246,
size: 0.5,
source: 158464,
target: 4246 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4962,
label: 'Jean-Pierre Vartanian',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/09/research_pasteur-jean-pierre-vartanian-photo-jpv--150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/jean-pierre-vartanian/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1584644962,
size: 0.5,
source: 158464,
target: 4962 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4483,
label: 'Han Li',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_han_li_small-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/han-li/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1584644483,
size: 0.5,
source: 158464,
target: 4483 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1584644138,
size: 0.5,
source: 158464,
target: 4138 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4355,
label: 'Ivo Gomperts Boneca',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-ivo-gomperts-boneca-p9090188-copie-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/ivo-gomperts-boneca/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1584644355,
size: 0.5,
source: 158464,
target: 4355 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 154014,
label: 'SOFTWARE: MinActionPath',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/02/research_pasteur-minactionpath-minactionpath-150x150.png',
page_url: 'https://research.pasteur.fr/fr/software/minactionpath/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138154014,
size: 0.5,
source: 4138,
target: 154014,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1540144138,
size: 0.5,
source: 154014,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 121952,
label: 'TEAM: Biologie Moléculaire Structurale et Processus Infectieux',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/team/structural-molecular-biology-and-infectious-process/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4138121952,
size: 0.5,
source: 4138,
target: 121952,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1219524138,
size: 0.5,
source: 121952,
target: 4138 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4426) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1219524426,
size: 0.5,
source: 121952,
target: 4426 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 31379,
label: 'PROJECT: Development of methods in computational structural biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research_pasteur-development-of-methods-in-computational-structural-biology-img-1285-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/project/development-of-methods-in-computational-structural-biology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 413831379,
size: 0.5,
source: 4138,
target: 31379,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 313794138,
size: 0.5,
source: 31379,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 30443,
label: 'PROJECT: DNA Polymerases Engineering and Synthetic Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research_pasteur-dna-polymerases-engineering-and-synthetic-biology-polb-hna-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/project/dna-replication-and-synthetic-biology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 413830443,
size: 0.5,
source: 4138,
target: 30443,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 304434138,
size: 0.5,
source: 30443,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 30274,
label: 'SOFTWARE: NOMAD-Ref',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research_pasteur-nomad-ref-cover-image-pbmb-150x150.png',
page_url: 'https://research.pasteur.fr/fr/software/nomad-ref/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 413830274,
size: 0.5,
source: 4138,
target: 30274,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 302744138,
size: 0.5,
source: 30274,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 30262,
label: 'PROJECT: DNA Repair and Cancer',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research_pasteur-dna-repair-and-cancer-polmu-fig8-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/project/dna-repair/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 413830262,
size: 0.5,
source: 4138,
target: 30262,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 302624138,
size: 0.5,
source: 30262,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 21003,
label: 'PROJECT: Ligand-gated Ion channels',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research_pasteur-ligand-gated-ion-channels-cover-image-cell-rep-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/project/structural-dynamics-of-macromolecules/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 413821003,
size: 0.5,
source: 4138,
target: 21003,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 210034138,
size: 0.5,
source: 21003,
target: 4138 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 6153,
label: 'TEAM: Architecture et Dynamique des Macromolécules Biologiques',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_423851-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/team/architecture-and-dynamics-of-biological-macromolecules/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 41386153,
size: 0.5,
source: 4138,
target: 6153,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4143) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61534143,
size: 0.5,
source: 6153,
target: 4143 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 92036,
label: 'Marie De Tarragon',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/marie-de-tarragon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 615392036,
size: 0.5,
source: 6153,
target: 92036 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 149036,
label: 'Leonardo Betancurt',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/10/research_pasteur-leonardo-betancurt-leo-scaled-e1650635907635-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/leonardo-betancurt-anzola/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153149036,
size: 0.5,
source: 6153,
target: 149036 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 154241,
label: 'Sophia Missoury',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/sophia-missoury/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153154241,
size: 0.5,
source: 6153,
target: 154241 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 170355) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6153170355,
size: 0.5,
source: 6153,
target: 170355 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4294,
label: 'Soizick Lucas-Staat',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_soizick_lucas-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/soizick-lucas-staat/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61534294,
size: 0.5,
source: 6153,
target: 4294 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 189862,
label: 'Marie Imbert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/10/research_pasteur-marie-imbert-img-3572-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/marie-imbert/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153189862,
size: 0.5,
source: 6153,
target: 189862 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 189865,
label: 'Eloi Vincent',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/10/research_pasteur-dsc5001-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/fr/member/eloi-vincent-2/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153189865,
size: 0.5,
source: 6153,
target: 189865 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 216054,
label: 'Murielle Seif El Dahan',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/murielle-seif-el-dahan/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153216054,
size: 0.5,
source: 6153,
target: 216054 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 231823,
label: 'Clement LOPEZ',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/fr/member/clement-lopez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6153231823,
size: 0.5,
source: 6153,
target: 231823 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4138) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61534138,
size: 0.5,
source: 6153,
target: 4138 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});