Timeline

Sebastian Duchene

Head of Structure

08 Jun 2025

project

VAXPOX: Modeling of mpox circulation, identification of groups at-risk of infection, and cost-effectiveness analyses of vaccine strategies in Central and West Africa

29 May 2025

publication

Pre-European contact leprosy in the Americas and its current persistence.

16 Apr 2025

project

TraM – Trait-driven molecular clocks: dating the long-term evolution of re-emerging bacterial pathogens

04 Apr 2025

publication

Temporal and geographical lineage dynamics of invasive Streptococcus pyogenes in Australia from 2011 to 2023: a retrospective, multicentre, clinical and genomic epidemiology study.

01 Apr 2025

publication

How does date-rounding affect phylodynamic inference for public health?

06 Nov 2024

publication

Assessing the effect of model specification and prior sensitivity on Bayesian tests of temporal signal

01 Nov 2024

publication

Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin.

17 Feb 2024

publication

Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root-to-Tip Regression

14 Dec 2023

publication

Tracing the origin of virulence

04 Oct 2023

publication

Detecting Episodic Evolution through Bayesian Inference of Molecular Clock Models.

03 Oct 2023

team

Evolutionary dynamics of infectious diseases

01 Aug 2023

publication

The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia.

17 Jan 2023

publication

Promiscuous evolution of Group A Streptococcal M and M-like proteins

01 Jan 2023

publication

Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink.

01 Oct 2022

publication

New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia.

01 Aug 2022

publication

Lymphocytic Choriomeningitis Virus Infection, Australia.

03 Feb 2022

publication

The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate.

01 Jan 2020

publication

Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics

15 Dec 2016

publication

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Timeline

VAXPOX: Modeling of mpox circulation, identification of groups at-risk of infection, and cost-effectiveness analyses of vaccine strategies in Central and West Africa

Pre-European contact leprosy in the Americas and its current persistence.

TraM – Trait-driven molecular clocks: dating the long-term evolution of re-emerging bacterial pathogens

Temporal and geographical lineage dynamics of invasive Streptococcus pyogenes in Australia from 2011 to 2023: a retrospective, multicentre, clinical and genomic epidemiology study.

How does date-rounding affect phylodynamic inference for public health?

Assessing the effect of model specification and prior sensitivity on Bayesian tests of temporal signal

Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin.

Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root-to-Tip Regression

Tracing the origin of virulence

Detecting Episodic Evolution through Bayesian Inference of Molecular Clock Models.

Evolutionary dynamics of infectious diseases

The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia.

Promiscuous evolution of Group A Streptococcal M and M-like proteins

Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink.

New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia.

Lymphocytic Choriomeningitis Virus Infection, Australia.

The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate.

Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics

Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.