sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 11,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 10372,
label: 'Institut Pasteur [Paris, France]',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_i00845-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/network/institut-pasteur-paris-france/',
x: 0,
y: 0,
size: 20,
color: '#AAAAAA'
});
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 6101,
label: 'Mycology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_aspergillus-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/mycology/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103726101,
size: 0.5,
source: 10372,
target: 6101 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6197,
label: 'Archived: Aspergillus',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_42054-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/aspergillus/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 61016197,
size: 0.5,
source: 6101,
target: 6197 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6196,
label: 'Fungal Biology and Pathogenicity',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_fungal-biology-and-pathogenicity2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fungal-biology-and-pathogenicity/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 61016196,
size: 0.5,
source: 6101,
target: 6196 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 24312,
label: 'RNA Biology of Fungal Pathogens',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_i00638-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/rna-biology-of-fungal-pathogens/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 610124312,
size: 0.5,
source: 6101,
target: 24312 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 96449,
label: 'Fungal Epigenomics',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/fungal-epigenomics/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 610196449,
size: 0.5,
source: 6101,
target: 96449 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6122,
label: 'Immunology of Fungal Infections',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_2gj7w5xc-1372179603-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/immunology-of-fungal-infections/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 61016122,
size: 0.5,
source: 6101,
target: 6122 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6198,
label: 'Molecular Mycology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_molecular-mycology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/molecular-mycology/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 61016198,
size: 0.5,
source: 6101,
target: 6198 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 26,
label: 'Neuroscience',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/brain_artwork_cells_1920x1080_24208-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/neuroscience/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 1037226,
size: 0.5,
source: 10372,
target: 26 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 36,
label: 'Human Genetics and Cognitive Functions',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_32050-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/human-genetics-and-cognitive-functions/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2636,
size: 0.5,
source: 26,
target: 36 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57,
label: 'Genetics & Physiology of Hearing',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/dna-genes-1405932776-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/genetics-physiology-of-hearing/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2657,
size: 0.5,
source: 26,
target: 57 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 59,
label: 'Dynamic Neuronal Imaging',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/zoom-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamic-neuronal-imaging/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2659,
size: 0.5,
source: 26,
target: 59 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 86,
label: 'Channel Receptors',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/research_pasteur-channel-receptors-bandeau-unite-pj-corringer-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/channel-receptors/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2686,
size: 0.5,
source: 26,
target: 86 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6201,
label: 'Integrative Neurobiology of Cholinergic Systems',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_14282-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/integrative-neurobiology-of-cholinergic-systems/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 266201,
size: 0.5,
source: 26,
target: 6201 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6202,
label: 'Perception and Memory',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_chen_stemcells_6-2013-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/perception-and-memory/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 266202,
size: 0.5,
source: 26,
target: 6202 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 68286,
label: 'Neural circuits for spatial navigation and memory',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_bandeau2-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/neural-circuits-for-spatial-navigation-and-memory/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2668286,
size: 0.5,
source: 26,
target: 68286 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 70654,
label: 'Decision and Bayesian Computation',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/decision-and-bayesian-computation/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2670654,
size: 0.5,
source: 26,
target: 70654 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 94978,
label: 'Neural circuit dynamics and decision making',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/neural-circuit-dynamics-and-decision-making/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 2694978,
size: 0.5,
source: 26,
target: 94978 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 15,
label: 'Cell Biology & Infection',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cells_under_a_microscope-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/cell-biology-infection/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 1037215,
size: 0.5,
source: 10372,
target: 15 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 517,
label: 'Bioimage Analysis',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/12/grid01-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/bioimage-analysis/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 15517,
size: 0.5,
source: 15,
target: 517 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 345,
label: 'Archived: Bacteria-Cell Interactions',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/11/research.pasteur.fr_bacteria-cell-interactions-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bacteria-cell-interactions/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 15345,
size: 0.5,
source: 15,
target: 345 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6139,
label: 'Cell Polarity, Migration And Cancer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_cell-polarity-migration-and-cancer-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cell-polarity-migration-and-cancer/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 156139,
size: 0.5,
source: 15,
target: 6139 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6141,
label: 'Cellular Biology of Microbial Infection',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-of-cell-interactions-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cellular-biology-of-microbial-infection/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 156141,
size: 0.5,
source: 15,
target: 6141 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6134,
label: 'Dynamics of Host-Pathogen Interactions',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_453295a-f1.2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamics-of-host-pathogen-interactions/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 156134,
size: 0.5,
source: 15,
target: 6134 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
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source: 110138,
target: 794 });
// create new team
// check if team already exist
g.edges.push({
id: 110138748,
size: 0.5,
source: 110138,
target: 748 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 15050,
label: 'Chemogenomic and Biological Screening Platform (PF-CCB)',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_14287-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fabrice-agou-team/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013815050,
size: 0.5,
source: 110138,
target: 15050 });
// check if team already exist
g.edges.push({
id: 11013879077,
size: 0.5,
source: 110138,
target: 79077 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 110152,
label: 'Biological NMR Technological Platform',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/biological-nmr-technological-platform/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 110138110152,
size: 0.5,
source: 110138,
target: 110152 });
// check if team already exist
g.edges.push({
id: 1101381072,
size: 0.5,
source: 110138,
target: 1072 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 36902,
label: 'Cytometry',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_39867-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cytometry/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013836902,
size: 0.5,
source: 110138,
target: 36902 });
// check if team already exist
g.edges.push({
id: 11013898764,
size: 0.5,
source: 110138,
target: 98764 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 53310,
label: 'Tech Lab',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_tech-lab-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/tech-lab/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013853310,
size: 0.5,
source: 110138,
target: 53310 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 118434,
label: 'Nanoimaging',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/nanoimaging/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 110138118434,
size: 0.5,
source: 110138,
target: 118434 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 118961,
label: 'Production and Purification of Recombinant Proteins',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/production-and-purification-of-recombinant-proteins/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 110138118961,
size: 0.5,
source: 110138,
target: 118961 });
// adding center
var x_node = Math.cos(2 * 2 * Math.PI / 5) * 4;
var y_node = Math.sin(2 * 2 * Math.PI / 5) * 4;
g.nodes.push({
id: 2617,
label: 'Center for Global Health Research and Education',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_image2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/center/cgh/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103722617,
size: 0.5,
source: 10372,
target: 2617 });
// adding center
var x_node = Math.cos(2 * 3 * Math.PI / 5) * 4;
var y_node = Math.sin(2 * 3 * Math.PI / 5) * 4;
g.nodes.push({
id: 2621,
label: 'Center for Translational Science',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_361071-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/center/crt/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103722621,
size: 0.5,
source: 10372,
target: 2621 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 26170,
label: 'Clinical Core',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_36110-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/clinical-core/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262126170,
size: 0.5,
source: 2621,
target: 26170 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 26203,
label: 'Clinical Investigation and Access to BioResources (ICAReB)',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_36209-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biobanking-icareb/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262126203,
size: 0.5,
source: 2621,
target: 26203 });
// check if team already exist
g.edges.push({
id: 262129755,
size: 0.5,
source: 2621,
target: 29755 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 80502,
label: 'Medical Center of the Institut Pasteur',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/12/research.pasteur.fr_institutpasteur_17130-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/medical-center-of-the-institut-pasteur/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262180502,
size: 0.5,
source: 2621,
target: 80502 });
// adding center
var x_node = Math.cos(2 * 4 * Math.PI / 5) * 4;
var y_node = Math.sin(2 * 4 * Math.PI / 5) * 4;
g.nodes.push({
id: 2462,
label: 'Center of Bioinformatics, Biostatistics and Integrative Biology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/Facebook-offers-its-Proxygen-server-on-Open-Source-Platform-for-developers-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/center/c3bi/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103722462,
size: 0.5,
source: 10372,
target: 2462 });
// check if team already exist
g.edges.push({
id: 24626135,
size: 0.5,
source: 2462,
target: 6135 });
// create new team
// check if team already exist
g.edges.push({
id: 24626160,
size: 0.5,
source: 2462,
target: 6160 });
// create new team
// check if team already exist
g.edges.push({
id: 24626165,
size: 0.5,
source: 2462,
target: 6165 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 6124,
label: 'Systems Biology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_system-biology1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/systemsbiology/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 24626124,
size: 0.5,
source: 2462,
target: 6124 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 18489,
label: 'Bioinformatics and Biostatistics HUB',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_complex-system-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 246218489,
size: 0.5,
source: 2462,
target: 18489 });
// check if team already exist
g.edges.push({
id: 24626151,
size: 0.5,
source: 2462,
target: 6151 });
// create new team
// check if team already exist
g.edges.push({
id: 24626186,
size: 0.5,
source: 2462,
target: 6186 });
// create new team
// check if team already exist
g.edges.push({
id: 246236,
size: 0.5,
source: 2462,
target: 36 });
// create new team
// check if team already exist
g.edges.push({
id: 24626116,
size: 0.5,
source: 2462,
target: 6116 });
// create new team
// check if team already exist
g.edges.push({
id: 246258598,
size: 0.5,
source: 2462,
target: 58598 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 77488,
label: 'Statistical Genetics',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_statistical-genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/statistical-genetics/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 246277488,
size: 0.5,
source: 2462,
target: 77488 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 83826,
label: 'InBio: Experimental and Computational Methods for Modeling Cellular Processes',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research_pasteur-experimental-and-computational-methods-for-modeling-cellular-processes-inria-0289-631-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/experimental-and-computational-methods-for-modeling-cellular-processes/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 246283826,
size: 0.5,
source: 2462,
target: 83826 });
// check if team already exist
g.edges.push({
id: 246270654,
size: 0.5,
source: 2462,
target: 70654 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 119692,
label: 'Sequence Bioinformatics',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/sequence-bioinformatics/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 2462119692,
size: 0.5,
source: 2462,
target: 119692 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 5,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:20,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});
© Research
Institut Pasteur