sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 12,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 10372,
label: 'Institut Pasteur',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_i00845-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/network/institut-pasteur-paris-france/',
x: 0,
y: 0,
size: 20,
color: '#AAAAAA'
});
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 125763,
label: 'Computational Biology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-dept_computational_biology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/computational-biology/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 10372125763,
size: 0.5,
source: 10372,
target: 125763 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 77488,
label: 'Statistical Genetics',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_statistical-genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/statistical-genetics/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12576377488,
size: 0.5,
source: 125763,
target: 77488 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 83826,
label: 'InBio: Experimental and Computational Methods for Modeling Cellular Processes',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research_pasteur-experimental-and-computational-methods-for-modeling-cellular-processes-inria-0289-631-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/inbio/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12576383826,
size: 0.5,
source: 125763,
target: 83826 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 119692,
label: 'Sequence Bioinformatics',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/sequence-bioinformatics/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 125763119692,
size: 0.5,
source: 125763,
target: 119692 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 58598,
label: 'Evolutionary Bioinformatics',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_evol_bioinfo_banner-1-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-bioinformatics/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12576358598,
size: 0.5,
source: 125763,
target: 58598 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 18489,
label: 'Bioinformatics and Biostatistics HUB',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_complex-system-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12576318489,
size: 0.5,
source: 125763,
target: 18489 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 70654,
label: 'Decision and Bayesian Computation',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/decision-and-bayesian-computation/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12576370654,
size: 0.5,
source: 125763,
target: 70654 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6124,
label: 'Systems Biology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_system-biology1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/systemsbiology/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257636124,
size: 0.5,
source: 125763,
target: 6124 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6135,
label: 'Imaging and Modeling',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_superres-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/imaging-and-modeling/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257636135,
size: 0.5,
source: 125763,
target: 6135 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 125756,
label: 'Global Health',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-aquatic-beautiful-biology-920157-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/global-health/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 10372125756,
size: 0.5,
source: 10372,
target: 125756 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6180,
label: 'Lyssavirus epidemiology and neuropathology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_lyssavirus-dynamics-and-host-adaptation-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/lyssavirus-epidemiology-and-neuropathology/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566180,
size: 0.5,
source: 125756,
target: 6180 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 94346,
label: 'Biodiversity and Epidemiology of Bacterial Pathogens',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_bordetelle-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biodiversity-and-epidemiology-of-bacterial-pathogens/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12575694346,
size: 0.5,
source: 125756,
target: 94346 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6186,
label: 'Mathematical Modelling Of Infectious Diseases',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_mathematical-modeling-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/mathematical-modelling-of-infectious-diseases/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566186,
size: 0.5,
source: 125756,
target: 6186 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6185,
label: 'Experimental neuropathology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_human-histopathology-and-animal-models1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/experimental-neuropathology/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566185,
size: 0.5,
source: 125756,
target: 6185 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6229,
label: 'Epidemiology of Emerging Diseases',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_electron-micrograph-of-ebola-virus-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/epidemiology-of-emerging-diseases/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566229,
size: 0.5,
source: 125756,
target: 6229 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6182,
label: 'Epidemiology and modelling of bacterial escape to antimicrobials',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_pharmacopepidemiology-and-infectious-diseases-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/epidemiology-and-modelling-of-bacterial-escape-to-antimicrobials/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566182,
size: 0.5,
source: 125756,
target: 6182 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6228,
label: 'Environment and Infectious Risks',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03450-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/environment-and-infectious-risks/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566228,
size: 0.5,
source: 125756,
target: 6228 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6126,
label: 'Trypanosomatids Infectious Processes',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_trypanosoma-infectious-processes-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosoma-infectious-processes/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566126,
size: 0.5,
source: 125756,
target: 6126 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6166,
label: 'Functional Genetics of Infectious Diseases',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_malaria-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/functional-genetics-of-infectious-diseases/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566166,
size: 0.5,
source: 125756,
target: 6166 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6184,
label: 'Invasive Bacterial Infections',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_invasive-bacterial-infections-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/invasive-bacterial-infections/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566184,
size: 0.5,
source: 125756,
target: 6184 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6227,
label: 'Enteric Bacterial Pathogens',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-unite_fx-weill_institutpasteur_13946-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/enteric-bacterial-pathogens/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 1257566227,
size: 0.5,
source: 125756,
target: 6227 });
if (x_node < 0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 24234,
label: 'Anthropology and Ecology of Disease Emergence',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/anthropology-and-ecology-of-disease-emergence/',
x: x_site,
y: y_site,
size: 4,
color: '#aaaaaa'
});
//link to node
g.edges.push({
id: 12575624234,
size: 0.5,
source: 125756,
target: 24234 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 6101,
label: 'Mycology',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-mycology-bandeaumyco-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/mycology/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103726101,
size: 0.5,
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type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/center/biological-resource-center-of-the-institut-pasteur-crbip/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 10372144997,
size: 0.5,
source: 10372,
target: 144997 });
// check if team already exist
g.edges.push({
id: 144997111545,
size: 0.5,
source: 144997,
target: 111545 });
// create new team
// check if team already exist
g.edges.push({
id: 144997109556,
size: 0.5,
source: 144997,
target: 109556 });
// create new team
// check if team already exist
g.edges.push({
id: 14499729245,
size: 0.5,
source: 144997,
target: 29245 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 26203,
label: 'Clinical Investigation and Access to BioResources (ICAReB)',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_36209-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biobanking-icareb/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 14499726203,
size: 0.5,
source: 144997,
target: 26203 });
// adding center
var x_node = Math.cos(2 * 1 * Math.PI / 4) * 4;
var y_node = Math.sin(2 * 1 * Math.PI / 4) * 4;
g.nodes.push({
id: 110135,
label: 'Center for Animal Resources and Research',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/center/c2ra/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 10372110135,
size: 0.5,
source: 10372,
target: 110135 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 16167,
label: 'Central Animal Facility',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_zebra-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/central-animal-facility/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013516167,
size: 0.5,
source: 110135,
target: 16167 });
// check if team already exist
g.edges.push({
id: 1101351110,
size: 0.5,
source: 110135,
target: 1110 });
// create new team
// check if team already exist
g.edges.push({
id: 110135845,
size: 0.5,
source: 110135,
target: 845 });
// create new team
// adding center
var x_node = Math.cos(2 * 2 * Math.PI / 4) * 4;
var y_node = Math.sin(2 * 2 * Math.PI / 4) * 4;
g.nodes.push({
id: 110138,
label: 'Center for Technological Resources and Research',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-center_tech-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/center/c2rt/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 10372110138,
size: 0.5,
source: 10372,
target: 110138 });
// check if team already exist
g.edges.push({
id: 11013829755,
size: 0.5,
source: 110138,
target: 29755 });
// create new team
// check if team already exist
g.edges.push({
id: 1101386156,
size: 0.5,
source: 110138,
target: 6156 });
// create new team
// check if team already exist
g.edges.push({
id: 11013894012,
size: 0.5,
source: 110138,
target: 94012 });
// create new team
// check if team already exist
g.edges.push({
id: 11013893967,
size: 0.5,
source: 110138,
target: 93967 });
// create new team
// check if team already exist
g.edges.push({
id: 1101382665,
size: 0.5,
source: 110138,
target: 2665 });
// create new team
// check if team already exist
g.edges.push({
id: 1101381024,
size: 0.5,
source: 110138,
target: 1024 });
// create new team
// check if team already exist
g.edges.push({
id: 110138794,
size: 0.5,
source: 110138,
target: 794 });
// create new team
// check if team already exist
g.edges.push({
id: 110138748,
size: 0.5,
source: 110138,
target: 748 });
// create new team
// check if team already exist
g.edges.push({
id: 11013815050,
size: 0.5,
source: 110138,
target: 15050 });
// create new team
// check if team already exist
g.edges.push({
id: 11013879077,
size: 0.5,
source: 110138,
target: 79077 });
// create new team
// check if team already exist
g.edges.push({
id: 110138110152,
size: 0.5,
source: 110138,
target: 110152 });
// create new team
// check if team already exist
g.edges.push({
id: 1101381072,
size: 0.5,
source: 110138,
target: 1072 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 36902,
label: 'Cytometry Platform',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_39867-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cytometry/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013836902,
size: 0.5,
source: 110138,
target: 36902 });
// check if team already exist
g.edges.push({
id: 11013898764,
size: 0.5,
source: 110138,
target: 98764 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 53310,
label: 'Tech Lab',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_tech-lab-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/tech-lab/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 11013853310,
size: 0.5,
source: 110138,
target: 53310 });
// check if team already exist
g.edges.push({
id: 110138118434,
size: 0.5,
source: 110138,
target: 118434 });
// create new team
// check if team already exist
g.edges.push({
id: 110138118961,
size: 0.5,
source: 110138,
target: 118961 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 134514,
label: 'HPC Core Facility',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/hpc-core-facility/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 110138134514,
size: 0.5,
source: 110138,
target: 134514 });
// adding center
var x_node = Math.cos(2 * 3 * Math.PI / 4) * 4;
var y_node = Math.sin(2 * 3 * Math.PI / 4) * 4;
g.nodes.push({
id: 2621,
label: 'Center for Translational Science',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_361071-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/center/crt/',
x: x_node,
y: y_node,
size: 15,
color: '#aaaaaa'
});
// linking departments to IP Paris
g.edges.push({
id: 103722621,
size: 0.5,
source: 10372,
target: 2621 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 26170,
label: 'Clinical Core',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_36110-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/clinical-core/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262126170,
size: 0.5,
source: 2621,
target: 26170 });
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 26203,
label: 'Clinical Investigation and Access to BioResources (ICAReB)',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_36209-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biobanking-icareb/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262126203,
size: 0.5,
source: 2621,
target: 26203 });
// check if team already exist
g.edges.push({
id: 262129755,
size: 0.5,
source: 2621,
target: 29755 });
// create new team
// check if team already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
g.nodes.push({
id: 80502,
label: 'Medical Center of the Institut Pasteur',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/12/research.pasteur.fr_institutpasteur_17130-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/medical-center-of-the-institut-pasteur/',
x: x_node,
y: y_node,
size: 4,
color: '#999999'
});
g.edges.push({
id: 262180502,
size: 0.5,
source: 2621,
target: 80502 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 5,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:20,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});
© Research
Institut Pasteur