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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
09
Jun 2016
Status
Ongoing
Members
3

About

TissueMiner is a framework to perform a multiscale analysis of an entire developing epithelium acquired at cellular resolution over several hours or days. It includes (a) tools to build a database from a timelapse movie, (b) ready-to-use tools to analyze various aspects of cell and tissue morphogenesis, and (c) a powerful but yet easy to use R programming interface to allow for the implementation of custom analyses. TissueMiner was developed in Suzanne Eaton’s lab  with the help of the Scientific Computing facility (Max Planck Institute for Cell Biology and Genetics, Dresden) in tight collaboration with Frank Jülicher’s group  (Max Planck Institute for Physics of Complex Systems,  Dresden).

https://github.com/mpicbg-scicomp/tissue_miner

Please, consider the resource paper describing TissueMiner capabilities: http://dx.doi.org/10.7554/eLife.14334